View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13383_low_13 (Length: 384)
Name: NF13383_low_13
Description: NF13383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13383_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 5e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 25544118 - 25544331
Alignment:
| Q |
17 |
caatattagcaagatctcctttgaattagaccgttgtctagcttcatatctcaaagatgtgtctgtgtttcaagctctcggccgcggaatgagcaataat |
116 |
Q |
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| T |
25544118 |
caatattagcaagatctcctttgaattagaccgttgtctagcttcatatctcgaagatgcgtctgtgtttcaagctctcggccgccgaatgagcaataat |
25544217 |
T |
|
| Q |
117 |
ggtgtcattattgtggaggttgaaaagnnnnnnnaacattgattagttcaatgttgaaactattcaatgttaaaaaccgcttcaatttccaaaataatgg |
216 |
Q |
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|||||||||||||||||||||||| | |||||||| |||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
25544218 |
ggtgtcattattgtggaggttgaatcgtttttttaacattgaatagttcaatgtttaaactattcaatgttaaaaaacgcttccatttccaaaataatgg |
25544317 |
T |
|
| Q |
217 |
tgacaccattattg |
230 |
Q |
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|||| ||||||||| |
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| T |
25544318 |
tgactccattattg |
25544331 |
T |
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