View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13383_low_15 (Length: 324)
Name: NF13383_low_15
Description: NF13383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13383_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 308
Target Start/End: Original strand, 1057719 - 1058010
Alignment:
| Q |
17 |
atatcatatcactcactatgtgttactgtaatttactcatttcatttcagagttgttttggcaccactcacaagaaacagatcctatggcaatgttccac |
116 |
Q |
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| T |
1057719 |
atatcatatcactcactatgtgttactgtaatttactcatttcatttcagagttgttttggcaccactcacaagaaacagatcctatggcaatgttccac |
1057818 |
T |
|
| Q |
117 |
aacctcatgctatcctctattactctcagagagcagccggttctaacggaggtcttctcataaccgaagctaccggtatatctgacaccgctcaagggta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1057819 |
aacctcatgctatcctctattactctcagagagcagccggttctaacggaggtcttctcataaccgaagctaccggtatatctgacaccgctcaagggta |
1057918 |
T |
|
| Q |
217 |
tccagatacgccaggtatttggactaaagagcacgtcgaggcgtggaaacctattgtggatgctgtccatgccaaaggtgctaccttcttct |
308 |
Q |
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| T |
1057919 |
tccagacacgccaggtatttggactaaagagcacgtcgaggcgtggaaacctattgtggatgctgtccatgccaaaggtgctaccttcttct |
1058010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 46 - 306
Target Start/End: Original strand, 1064784 - 1065044
Alignment:
| Q |
46 |
aatttactcatttcatttcagagttgttttggcaccactcacaagaaacagatcctatggcaatgttccacaacctcatgctatcctctattactctcag |
145 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
1064784 |
aatttactcatttcatttcagagttgttttggcaccactcacaagacaaagatcttatggcaacgttccacaacctcatgctatcctctattactcacag |
1064883 |
T |
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| Q |
146 |
agagcagccggttctaacggaggtcttctcataaccgaagctaccggtatatctgacaccgctcaagggtatccagatacgccaggtatttggactaaag |
245 |
Q |
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| T |
1064884 |
agagccaccggctctaacggaggtcttctcataaccgaagctaccggtgtctctgacaccgctcaagggtatccagatacgccaggtatttggactaaag |
1064983 |
T |
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| Q |
246 |
agcacgtcgaggcgtggaaacctattgtggatgctgtccatgccaaaggtgctaccttctt |
306 |
Q |
| |
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|||| |||||||| |||||||| |||||||||||||| ||||| |||||||||||| |||| |
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| T |
1064984 |
agcatgtcgaggcatggaaacccattgtggatgctgttcatgctaaaggtgctaccatctt |
1065044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 61 - 308
Target Start/End: Original strand, 1032638 - 1032879
Alignment:
| Q |
61 |
tttcagagttgttttggcaccactcacaagaaacagatcctatggcaatgttccacaacctcatgctatcctctattactctcagagagcagccggttct |
160 |
Q |
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||||||||||||||||||||||||||| |||| ||||| |||||||| ||||| |||||||||||| ||||||||||||| ||||||||| || |
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| T |
1032638 |
tttcagagttgttttggcaccactcactagaataagatcatatggcaacgttcctcaacctcatgctgtcctctattactcacagagagcatcc------ |
1032731 |
T |
|
| Q |
161 |
aacggaggtcttctcataaccgaagctaccggtatatctgacaccgctcaagggtatccagatacgccaggtatttggactaaagagcacgtcgaggcgt |
260 |
Q |
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|| || |||||||||||| | |||||||||||| | |||||||| ||||||||||||||||| || |||||||| |||||||||||||| |||||||||| |
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| T |
1032732 |
aaaggtggtcttctcatagctgaagctaccggtgtctctgacactgctcaagggtatccagacacaccaggtatatggactaaagagcatgtcgaggcgt |
1032831 |
T |
|
| Q |
261 |
ggaaacctattgtggatgctgtccatgccaaaggtgctaccttcttct |
308 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
1032832 |
ggaaacctattgtggatgctgttcatgccaaaggtgctacattcttct |
1032879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 61 - 308
Target Start/End: Original strand, 1051961 - 1052202
Alignment:
| Q |
61 |
tttcagagttgttttggcaccactcacaagaaacagatcctatggcaatgttccacaacctcatgctatcctctattactctcagagagcagccggttct |
160 |
Q |
| |
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||||||||||||||||||||||||||| |||| ||||| |||||||| ||||| |||||||||||| ||||||||||||| ||||||||| || |
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| T |
1051961 |
tttcagagttgttttggcaccactcactagaataagatcatatggcaacgttcctcaacctcatgctgtcctctattactcacagagagcatcc------ |
1052054 |
T |
|
| Q |
161 |
aacggaggtcttctcataaccgaagctaccggtatatctgacaccgctcaagggtatccagatacgccaggtatttggactaaagagcacgtcgaggcgt |
260 |
Q |
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|| || |||||||||||| | |||||||||||| | |||||||| ||||||||||||||||| || |||||||| |||||||||||||| |||||||||| |
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| T |
1052055 |
aaaggtggtcttctcatagctgaagctaccggtgtctctgacactgctcaagggtatccagacacaccaggtatatggactaaagagcatgtcgaggcgt |
1052154 |
T |
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| Q |
261 |
ggaaacctattgtggatgctgtccatgccaaaggtgctaccttcttct |
308 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
1052155 |
ggaaacctattgtggatgctgttcatgccaaaggtgctacattcttct |
1052202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 34 - 294
Target Start/End: Original strand, 1070081 - 1070336
Alignment:
| Q |
34 |
atgtgttactgtaatttactcattt-catttcagagttgttttggcaccactcacaagaaacagatcctatggcaatgttccacaacctcatgctatcct |
132 |
Q |
| |
|
||||||| ||| |||||||||||| ||||||||||||||||||||||| ||||||||| | |||||||| ||||| ||||||||||||||||||||||| |
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| T |
1070081 |
atgtgtttgtgttatttactcattttcatttcagagttgttttggcacctctcacaagacagagatcctacggcaacgttccacaacctcatgctatcct |
1070180 |
T |
|
| Q |
133 |
ctattactctcagagagcagccggttctaacggaggtcttctcataaccgaagctaccggtatatctgacaccgctcaagggtatccagatacgccaggt |
232 |
Q |
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||| |||||||| ||||| ||||| || |||||||||||| |||||||||||||| | ||||| ||||||||||| |||||| | ||||| ||| |
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| T |
1070181 |
ctactactctcaaagagc------ctctaaaggtggtcttctcatagccgaagctaccggtgtctctgataccgctcaaggctatccaaacacgcctggt |
1070274 |
T |
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| Q |
233 |
atttggactaaagagcacgtcgaggcgtggaaacctattgtggatgctgtccatgccaaagg |
294 |
Q |
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|| |||||||||||||| ||||| || |||||||| |||||||||||||| |||| |||||| |
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| T |
1070275 |
atatggactaaagagcaagtcgatgcatggaaacccattgtggatgctgttcatgacaaagg |
1070336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 158 - 273
Target Start/End: Original strand, 1049231 - 1049346
Alignment:
| Q |
158 |
tctaacggaggtcttctcataaccgaagctaccggtatatctgacaccgctcaagggtatccagatacgccaggtatttggactaaagagcacgtcgagg |
257 |
Q |
| |
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||||| ||||| ||||||||| | |||||||| ||| | || ||||| |||||||| |||||| | ||||||||||| |||||||||||||| || |||| |
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| T |
1049231 |
tctaaaggaggccttctcatagctgaagctactggtgtctcagacactgctcaaggctatccaaacacgccaggtatatggactaaagagcatgttgagg |
1049330 |
T |
|
| Q |
258 |
cgtggaaacctattgt |
273 |
Q |
| |
|
|||||||||||||||| |
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| T |
1049331 |
cgtggaaacctattgt |
1049346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 60 - 294
Target Start/End: Original strand, 1043045 - 1043273
Alignment:
| Q |
60 |
atttcagagttgttttggcaccactcacaagaaacagatcctatggcaatgttccacaacctcatgctatcctctattactctcagagagcagccggttc |
159 |
Q |
| |
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||||||||||||||||||||||||| ||||||| ||||| || ||||||||| ||||| |||| || ||||| ||||||||| | || |
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| T |
1043045 |
atttcagagttgttttggcaccactaacaagaatgagatcatacaacaatgttcctcaacccattgctgtcaagtattattctcagagaacc------tc |
1043138 |
T |
|
| Q |
160 |
taacggaggtcttctcataaccgaagctaccggtatatctgacaccgctcaagggtatccagatacgccaggtatttggactaaagagcacgtcgaggcg |
259 |
Q |
| |
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||| || ||| |||||||| | |||||||| ||| | || ||||| |||||||| |||||| | |||||||| || |||||||||||||| || |||||| |
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| T |
1043139 |
taaaggtggtattctcatagctgaagctactggtgtttcagacactgctcaaggctatccaaacacgccaggaatatggactaaagagcaagttgaggcg |
1043238 |
T |
|
| Q |
260 |
tggaaacctattgtggatgctgtccatgccaaagg |
294 |
Q |
| |
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||||||||||| || ||||| || |||| |||||| |
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| T |
1043239 |
tggaaacctatcgtagatgcggttcatgacaaagg |
1043273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 236 - 307
Target Start/End: Original strand, 1045897 - 1045968
Alignment:
| Q |
236 |
tggactaaagagcacgtcgaggcgtggaaacctattgtggatgctgtccatgccaaaggtgctaccttcttc |
307 |
Q |
| |
|
||||| |||||||| ||||| |||||||||||||| ||||||||||| ||||||||||||||||| |||||| |
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| T |
1045897 |
tggacaaaagagcaagtcgaagcgtggaaacctatcgtggatgctgttcatgccaaaggtgctacattcttc |
1045968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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