View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13383_low_16 (Length: 309)
Name: NF13383_low_16
Description: NF13383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13383_low_16 |
 | |
|
| [»] scaffold0145 (1 HSPs) |
| | |
|
| [»] scaffold1001 (1 HSPs) |
| | |
|
| [»] scaffold0290 (1 HSPs) |
| | |
|
| [»] scaffold0094 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0145 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: scaffold0145
Description:
Target: scaffold0145; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 8 - 297
Target Start/End: Original strand, 12552 - 12841
Alignment:
| Q |
8 |
gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12552 |
gacatcatcattctcatcattattataatataaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtc |
12651 |
T |
|
| Q |
108 |
atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgcta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
12652 |
atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcttgtcgttattccacaccttacgcgtgactcattctatgcca |
12751 |
T |
|
| Q |
208 |
acatccatttattttattttagtattcatctcacagacgtactctattctctcatctattcaaggccttctatatactctatcccctgat |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
12752 |
acatccatttattttattttagtattcatctcacagacgtactctattctctcatctattcaaggccttctatatactttatcctctgat |
12841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 8 - 297
Target Start/End: Complemental strand, 16285165 - 16284876
Alignment:
| Q |
8 |
gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16285165 |
gacatcatcattctcatcattattataatataaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtc |
16285066 |
T |
|
| Q |
108 |
atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgcta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
16285065 |
atagttataggactccccatcattactctttatcatccacttatatcaccaccttatcttgtcgttattccacaccttacgcgtgactcattctatgcca |
16284966 |
T |
|
| Q |
208 |
acatccatttattttattttagtattcatctcacagacgtactctattctctcatctattcaaggccttctatatactctatcccctgat |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
16284965 |
acatccatttattttattttagtattcatctcacagacgtactctattctctcatctattcaaggccttctatatactttatcccctgat |
16284876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 18231604 - 18231449
Alignment:
| Q |
8 |
gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt |
107 |
Q |
| |
|
|||||| ||||||||||||||||||||||| || ||||||||| | |||||||||||||||||||||||||||||||||| ||||||| ||||| |||| |
|
|
| T |
18231604 |
gacatcgtcattctcatcattattataatataacatcatcattttctatcgtagtaatttctttacatatatataatattaatcgtcatcactctttgtt |
18231505 |
T |
|
| Q |
108 |
atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatc |
165 |
Q |
| |
|
| || ||| ||| ||| |||||||||||| ||||| ||| |||||||||||||||||| |
|
|
| T |
18231504 |
acag-tat-ggattcctcatcattactctctatcaaccgtttatatcaccaccttatc |
18231449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 9 - 165
Target Start/End: Original strand, 11555916 - 11556070
Alignment:
| Q |
9 |
acatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtta |
108 |
Q |
| |
|
||||| ||||||||||||||||||||||| || ||| ||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||| ||| | |
|
|
| T |
11555916 |
acatcgtcattctcatcattattataatataacatcaacatttcctatcgtagtaatttctttacatatatataatattaatcgtcatcactctttgtga |
11556015 |
T |
|
| Q |
109 |
tagttataggactccccatcattactctttatcatccgcttatatcaccaccttatc |
165 |
Q |
| |
|
|| ||| ||| || |||||||||||| ||||| || |||||||||||||||||| |
|
|
| T |
11556016 |
cag-tat-ggattcatcatcattactctctatcaaccatttatatcaccaccttatc |
11556070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 135
Target Start/End: Complemental strand, 11098468 - 11098355
Alignment:
| Q |
22 |
catcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttataggact |
121 |
Q |
| |
|
|||||||||||||||| || |||| |||||||| |||||||||||||||||||||||||||||| ||||||| |||||| ||| | |||||||||| |
|
|
| T |
11098468 |
catcattattataatataacatcattatttcccacaatagtaatttctttacatatatataatattaatcgtcatcactctccattacaattataggact |
11098369 |
T |
|
| Q |
122 |
ccccatcattactc |
135 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
11098368 |
cctcatcattactc |
11098355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 176 - 285
Target Start/End: Complemental strand, 11098356 - 11098247
Alignment:
| Q |
176 |
tccacaccttacgcgtgactcattctatgctaacatccatttattttattttagtattcatctcacagacgtactctattctctcatctattcaaggcct |
275 |
Q |
| |
|
||||||||||| ||||||||| || || | ||||||| ||||||||| |||| ||||||||||||| ||||||| |||||||| || ||||| ||||| |
|
|
| T |
11098356 |
tccacaccttatgcgtgactccttatacgtcaacatccctttattttactttattattcatctcacatacgtactatattctctaatatattctaggccc |
11098257 |
T |
|
| Q |
276 |
tctatatact |
285 |
Q |
| |
|
|||||||||| |
|
|
| T |
11098256 |
tctatatact |
11098247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 268
Target Start/End: Complemental strand, 18556837 - 18556781
Alignment:
| Q |
212 |
ccatttattttattttagtattcatctcacagacgtactctattctctcatctattc |
268 |
Q |
| |
|
|||| |||||||||||| ||| ||| |||||||| ||| |||||||||||||||||| |
|
|
| T |
18556837 |
ccatctattttattttattatccatatcacagacataccctattctctcatctattc |
18556781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 154; Significance: 1e-81; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 8 - 265
Target Start/End: Complemental strand, 10641449 - 10641192
Alignment:
| Q |
8 |
gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
10641449 |
gacatcatcattctcatcattattataatataacctcataatttcccatcgtagtaatttctttacatatatataatattaatcgtcatcgctctctgtc |
10641350 |
T |
|
| Q |
108 |
atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgcta |
207 |
Q |
| |
|
| |||||||||||||| | |||||||||| |||||||||||||||||||||||||||| || ||| ||||| ||| ||| ||||||||||||| || | |
|
|
| T |
10641349 |
acagttataggactcctcgtcattactctctatcatccgcttatatcaccaccttatctcttcattaatccacgcctcacgtgtgactcattctacgcca |
10641250 |
T |
|
| Q |
208 |
acatccatttattttattttagtattcatctcacagacgtactctattctctcatcta |
265 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||| | ||||| |||||||||||||| |
|
|
| T |
10641249 |
acatccatttactttattttattattcatctcacatatgtactttattctctcatcta |
10641192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 8 - 285
Target Start/End: Original strand, 14970060 - 14970339
Alignment:
| Q |
8 |
gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatat--atataatattactcgtcattactctctg |
105 |
Q |
| |
|
|||||| |||||||||| ||||||||||| || |||||||||||||||| ||||||||| || |||| ||||||||||| |||||| | ||| || |
|
|
| T |
14970060 |
gacatcgtcattctcattgttattataatataacatcatcatttcccatcgcggtaatttctataaatatatatataatattaaccgtcatcattctttg |
14970159 |
T |
|
| Q |
106 |
ttatagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgc |
205 |
Q |
| |
|
| | |||| ||||||||| |||||||||||| |||||||| |||||||||||| ||||| || ||| ||||||| ||||| ||||||||||||| |
|
|
| T |
14970160 |
tcacagttgtaggactcctcatcattactctctatcatccatttatatcaccactttatctcttcattaatccacactttacgagtgactcattctacat |
14970259 |
T |
|
| Q |
206 |
taacatccatttattttattttagtattcatctcacagacgtactctattctctcatctattcaaggccttctatatact |
285 |
Q |
| |
|
||||| | |||||||||||||| ||||| ||||| ||| |||||||||||||| |||||||| ||||| |||||||||| |
|
|
| T |
14970260 |
caacattcctttattttattttattattcttctcagagaggtactctattctcttatctattctaggccctctatatact |
14970339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 10906854 - 10906699
Alignment:
| Q |
8 |
gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt |
107 |
Q |
| |
|
|||||| ||||||||||||||||||||||| || |||||||||| |||| || | || | || ||||||| ||||||||| | | | ||||||||| |
|
|
| T |
10906854 |
gacatcgtcattctcatcattattataatataacatcatcatttcacatcctatttatatgttgacatatacataatattaacccccttcactctctgtc |
10906755 |
T |
|
| Q |
108 |
atagttataggactccccatcattactctttatcatccgcttatatcaccacctta |
163 |
Q |
| |
|
|||||||||| ||| | |||||||||||| ||| ||| |||||||||||||||| |
|
|
| T |
10906754 |
gcagttataggattcctcgtcattactctttgtcaaccgtttatatcaccacctta |
10906699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 165
Target Start/End: Original strand, 9191065 - 9191181
Alignment:
| Q |
49 |
tttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatccgct |
148 |
Q |
| |
|
|||| ||||||| | |||| || |||||||||| |||| | || |||| ||||| | | | |||||||||| ||| |||||||||||| ||||| ||| | |
|
|
| T |
9191065 |
tttctcatcgtatttatttattcacatatatattatatcaatcatcatcactctttatcacagttataggattcctcatcattactctctatcaaccgtt |
9191164 |
T |
|
| Q |
149 |
tatatcaccaccttatc |
165 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
9191165 |
tatatcaccaccttatc |
9191181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 268
Target Start/End: Complemental strand, 19547262 - 19547206
Alignment:
| Q |
212 |
ccatttattttattttagtattcatctcacagacgtactctattctctcatctattc |
268 |
Q |
| |
|
|||| |||||||||||| ||| |||||||||||| ||| |||||||||||||||||| |
|
|
| T |
19547262 |
ccatctattttattttattatccatctcacagacataccctattctctcatctattc |
19547206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 8403711 - 8403659
Alignment:
| Q |
215 |
tttattttattttagtattcatctcacagacgtactctattctctcatctatt |
267 |
Q |
| |
|
|||||||||||||| ||||||||| |||||| |||||||| | ||||||||| |
|
|
| T |
8403711 |
tttattttattttattattcatcttacagacatactctatcccatcatctatt |
8403659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 8 - 292
Target Start/End: Complemental strand, 24832161 - 24831871
Alignment:
| Q |
8 |
gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatat------ataatattactcgtcattactc |
101 |
Q |
| |
|
|||||| |||||||||||| ||||||| || || ||||||||||| |||||||||||||||||||||||||| ||||||||| || |||| |||| |
|
|
| T |
24832161 |
gacatcgtcattctcatcaatattatagtataacctcatcatttctcatcgtagtaatttctttacatatatgtatatataatattaatcatcatcactc |
24832062 |
T |
|
| Q |
102 |
tctgttatagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattct |
201 |
Q |
| |
|
| ||| | | |||||||||||| |||||||||||| ||||||||||||| ||||||| | |||| || ||| || || |||||||||||||||||||| |
|
|
| T |
24832061 |
tttgtcacaattataggactcctcatcattactctctatcatccgcttacatcaccatcgtatctcttcattagtcaactccttacgcgtgactcattct |
24831962 |
T |
|
| Q |
202 |
atgctaacatccatttattttattttagtattcatctcacagacgtactctattctctcatctattcaaggccttctatatactctatccc |
292 |
Q |
| |
|
| || ||||||| |||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||| | |||||||| |||||| |
|
|
| T |
24831961 |
acgccaacatccctttattttattttattattcatctcacagacatactctattctctcttctattcaaggccctatatatactttatccc |
24831871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 13935715 - 13935849
Alignment:
| Q |
24 |
tcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttataggactcc |
123 |
Q |
| |
|
|||||||||||||| || |||| |||||| |||||| | ||| |||||||| ||||| ||| | | ||||| ||||| ||| | ||||||||| ||| |
|
|
| T |
13935715 |
tcattattataatataacatcattatttcc-atcgtatttattcatttacatagatatagtatcaattgtcatcactctttgtcaccgttataggattcc |
13935813 |
T |
|
| Q |
124 |
ccatcattactctttatcatccgcttatatcaccac |
159 |
Q |
| |
|
||||||||||| ||||| ||| |||||||||||| |
|
|
| T |
13935814 |
taatcattactctctatcaaccgtttatatcaccac |
13935849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 8 - 292
Target Start/End: Complemental strand, 14481761 - 14481471
Alignment:
| Q |
8 |
gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatata------atattactcgtcattactc |
101 |
Q |
| |
|
|||||| |||| ||||||| ||||||| || || |||||||| |||||||||||||||||||||||||||||||| |||||| || |||| |||| |
|
|
| T |
14481761 |
gacatcgtcatcctcatcaatattatagtataacctcatcatgtcccatcgtagtaatttctttacatatatatatatataatattaatcatcatcactc |
14481662 |
T |
|
| Q |
102 |
tctgttatagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattct |
201 |
Q |
| |
|
| ||| | |||||||||||||| |||||||||||| ||||||||||||| ||||||| |||| || ||| ||||| |||||||||||||||||||| |
|
|
| T |
14481661 |
tttgtcacagttataggactcctcatcattactctctatcatccgcttacatcaccattgtatctcttcattaatccactccttacgcgtgactcattct |
14481562 |
T |
|
| Q |
202 |
atgctaacatccatttattttattttagtattcatctcacagacgtactctattctctcatctattcaaggccttctatatactctatccc |
292 |
Q |
| |
|
| || ||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| || | |||||||| |||||| |
|
|
| T |
14481561 |
acgccaacatccctttattttattttattattcatctcacagacatactctattctctcatctattcaagaccctatatatactttatccc |
14481471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 74 - 283
Target Start/End: Original strand, 17790941 - 17791150
Alignment:
| Q |
74 |
atatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgtt |
173 |
Q |
| |
|
||||||||||||||| || |||| ||||||||| | |||||||||||||| |||||||||||| | ||||||||||||| || ||||||||| || || |
|
|
| T |
17790941 |
atatatataatattaatcatcatcactctctgtcaaagttataggactcctcatcattactctctttcatccgcttataccatcaccttatctcttcatt |
17791040 |
T |
|
| Q |
174 |
attccacaccttacgcgtgactcattctatgctaacatccatttattttattttagtattcatctcacagacgtactctattctctcatctattcaaggc |
273 |
Q |
| |
|
| ||||||| |||| |||| ||||||||| ||| |||||| |||| ||||| || |||||| |||||| | |||||||||||||||||||||| |||| |
|
|
| T |
17791041 |
aatccacactttactcgtggctcattctacgctgacatccctttactttatcgtattattcacctcacaagcatactctattctctcatctattcgaggc |
17791140 |
T |
|
| Q |
274 |
cttctatata |
283 |
Q |
| |
|
| |||||||| |
|
|
| T |
17791141 |
cctctatata |
17791150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 74 - 283
Target Start/End: Original strand, 19099381 - 19099590
Alignment:
| Q |
74 |
atatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgtt |
173 |
Q |
| |
|
||||||||||||||| || |||| ||||||||| | |||||||||||||| |||||||||||| | ||||||||||||| || ||||||||| || || |
|
|
| T |
19099381 |
atatatataatattaatcatcatcactctctgtcaaagttataggactcctcatcattactctctttcatccgcttataccatcaccttatctcttcatt |
19099480 |
T |
|
| Q |
174 |
attccacaccttacgcgtgactcattctatgctaacatccatttattttattttagtattcatctcacagacgtactctattctctcatctattcaaggc |
273 |
Q |
| |
|
| ||||||| |||| |||| ||||||||| ||| |||||| |||| ||||| || |||||| |||||| | |||||||||||||||||||||| |||| |
|
|
| T |
19099481 |
aatccacactttactcgtggctcattctacgctgacatccctttactttatcgtattattcacctcacaagcatactctattctctcatctattcgaggc |
19099580 |
T |
|
| Q |
274 |
cttctatata |
283 |
Q |
| |
|
| |||||||| |
|
|
| T |
19099581 |
cctctatata |
19099590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 22159871 - 22159931
Alignment:
| Q |
98 |
actctctgttatagttataggactccccatcattactctttatcatccgcttatatcacca |
158 |
Q |
| |
|
||||| ||| |||||||||||| ||| |||||||||||| ||||| ||| ||||||||||| |
|
|
| T |
22159871 |
actctttgtcatagttataggattcctcatcattactctctatcaaccgtttatatcacca |
22159931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 268
Target Start/End: Complemental strand, 27870429 - 27870378
Alignment:
| Q |
217 |
tattttattttagtattcatctcacagacgtactctattctctcatctattc |
268 |
Q |
| |
|
|||||||||||| ||| ||||||||||| ||||||||| |||||||||||| |
|
|
| T |
27870429 |
tattttattttattatctatctcacagacatactctattttctcatctattc |
27870378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 268
Target Start/End: Complemental strand, 5943874 - 5943813
Alignment:
| Q |
207 |
aacatccatttattttattttagtattcatctcacagacgtactctattctctcatctattc |
268 |
Q |
| |
|
||||||| | |||||||||||| ||||||||| | ||| ||||||||| |||||||||||| |
|
|
| T |
5943874 |
aacatccctctattttattttattattcatcttatggacatactctattttctcatctattc |
5943813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 21975275 - 21975335
Alignment:
| Q |
98 |
actctctgttatagttataggactccccatcattactctttatcatccgcttatatcacca |
158 |
Q |
| |
|
||||| ||| |||||||| ||| ||| |||||||||||| ||||| ||| ||||||||||| |
|
|
| T |
21975275 |
actctttgtcatagttattggattcctcatcattactctctatcaaccgtttatatcacca |
21975335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 21997706 - 21997766
Alignment:
| Q |
98 |
actctctgttatagttataggactccccatcattactctttatcatccgcttatatcacca |
158 |
Q |
| |
|
||||| ||| |||||||| ||| ||| |||||||||||| ||||| ||| ||||||||||| |
|
|
| T |
21997706 |
actctttgtcatagttattggattcctcatcattactctctatcaaccgtttatatcacca |
21997766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 165
Target Start/End: Complemental strand, 22614857 - 22614701
Alignment:
| Q |
9 |
acatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtta |
108 |
Q |
| |
|
||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| | |
|
|
| T |
22614857 |
acatcgtcattctcttcattattataatataacctcatcatttcccatcgtagtaatttctttacatatatataatattaatcgtcatcactctctgtca |
22614758 |
T |
|
| Q |
109 |
tagttataggactccccatcattactctttatcatccgcttatatcaccaccttatc |
165 |
Q |
| |
|
||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
22614757 |
tagttataggactcctcatcaatactctctatcatccgcttatatcaccaccttatc |
22614701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 8 - 285
Target Start/End: Original strand, 20025970 - 20026247
Alignment:
| Q |
8 |
gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt |
107 |
Q |
| |
|
|||||||||||| |||| ||||||||||| || ||||||||| ||||| | |||||||||||||||||||||||||| | ||||||| ||||| ||| |
|
|
| T |
20025970 |
gacatcatcattgtcattgttattataatataacatcatcatttgccatcatggtaatttctttacatatatataatatgaatcgtcatcactctttgtc |
20026069 |
T |
|
| Q |
108 |
atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgcta |
207 |
Q |
| |
|
|||||| ||||||||| | |||||| ||| |||||| | ||||||||| |||||||| || ||| || ||||||||||||||||||||| | | | |
|
|
| T |
20026070 |
atagttgtaggactcctcttcattattctctatcatatgtttatatcacaaccttatctcttcattaatcaacaccttacgcgtgactcatttgacgtca |
20026169 |
T |
|
| Q |
208 |
acatccatttattttattttagtattcatctcacagacgtactctattctctcatctattcaaggccttctatatact |
285 |
Q |
| |
|
|||||| |||||| ||||||| ||||||||| ||||||||||| ||||||||||||||||| ||||| | |||||||| |
|
|
| T |
20026170 |
acatccctttattctattttattattcatcttacagacgtactatattctctcatctattctaggccctatatatact |
20026247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 8 - 165
Target Start/End: Original strand, 11655474 - 11655631
Alignment:
| Q |
8 |
gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt |
107 |
Q |
| |
|
|||||| |||||||| |||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||| || || | ||||||||| |
|
|
| T |
11655474 |
gacatcgtcattctcttcattattataatataacctcatcattttccatcgtagtaatttctttacatatatataatattaatcatcgtcactctctgtc |
11655573 |
T |
|
| Q |
108 |
atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatc |
165 |
Q |
| |
|
| || ||||||||||| ||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
11655574 |
acagctataggactcctcatcaatattctttatcatccgcttatatcaccaccttatc |
11655631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 13477596 - 13477489
Alignment:
| Q |
22 |
catcattattataatacaaactcatcatttcccatcgtagtaatttctttacatata------tataatattactcgtcattactctctgttatagttat |
115 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||||||||||||||||||||||||| |||||||||| ||||||| ||||| ||||| |||||| |
|
|
| T |
13477596 |
catcattattataatataacatcatcctttcccatcgtagtaatttctttacatatatatatatataatattaatcgtcatcactctttgttacagttat |
13477497 |
T |
|
| Q |
116 |
aggactcc |
123 |
Q |
| |
|
|||||||| |
|
|
| T |
13477496 |
aggactcc |
13477489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 236
Target Start/End: Complemental strand, 4531820 - 4531649
Alignment:
| Q |
64 |
atttctttacatatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatccgcttatatcaccacctta |
163 |
Q |
| |
|
|||| |||||||||||||||||| | | ||||| ||||| || | | |||| ||| ||| |||||||||||| ||||| ||| |||||||||||||||| |
|
|
| T |
4531820 |
atttatttacatatatataatatcaattgtcatcactcttcgtcaca-ttat-ggattcctcatcattactctctatcaaccgtttatatcaccacctta |
4531723 |
T |
|
| Q |
164 |
tcctgtcgttattccacaccttacgcgtgactca-ttctatgctaacatccatttattttattttagtattcat |
236 |
Q |
| |
|
|| || ||| |||| |||||| ||||||||| || || || |||| || | |||||||||||| ||||||| |
|
|
| T |
4531722 |
tctcttcattaatccaacccttacacgtgactcatttatacgccaacacccctctattttattttattattcat |
4531649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 44586574 - 44586360
Alignment:
| Q |
21 |
tcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttataggac |
120 |
Q |
| |
|
|||| ||||||||||| || |||||||||| ||||||||||||||||||||||||||||||| || ||||||| ||||| ||||| || ||| ||| |
|
|
| T |
44586574 |
tcattattattataatttaacatcatcatttcatatcgtagtaatttctttacatatatataatactaatcgtcatcactctttgttacag-tat-ggat |
44586477 |
T |
|
| Q |
121 |
tccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactca-ttctatgctaacatccatttat |
219 |
Q |
| |
|
||| |||||||||||| ||||| ||| |||||||||||||||||| | ||| |||| |||||||| ||||||| ||||||| ||||||| | ||| |
|
|
| T |
44586476 |
tcctcatcattactctctatcaaccgtttatatcaccaccttatctctttattaatccaacccttacgcatgactcatttctatgtcaacatccctctat |
44586377 |
T |
|
| Q |
220 |
tttattttagtattcat |
236 |
Q |
| |
|
||||||| | ||||||| |
|
|
| T |
44586376 |
tttatttcattattcat |
44586360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 132 - 285
Target Start/End: Original strand, 24786268 - 24786421
Alignment:
| Q |
132 |
actctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgctaacatccatttattttattttagta |
231 |
Q |
| |
|
||||| |||||| || ||||||| |||||| || | || ||| || | |||||||| |||||| |||||| | ||||||| |||||||||||||| || |
|
|
| T |
24786268 |
actctctatcattcgtttatatcttcaccttctcttttcattaatctataccttacgtgtgacttattctacgtcaacatccctttattttattttatta |
24786367 |
T |
|
| Q |
232 |
ttcatctcacagacgtactctattctctcatctattcaaggccttctatatact |
285 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||| |||||||||| |
|
|
| T |
24786368 |
ttcatctcacagacgtgctctattctctcatctattctaggcaatctatatact |
24786421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 159
Target Start/End: Original strand, 16862347 - 16862432
Alignment:
| Q |
74 |
atatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatccgcttatatcaccac |
159 |
Q |
| |
|
||||||||||||||| || || || || |||| ||||||||||| ||| |||||||| ||||||||| ||| |||||| ||||| |
|
|
| T |
16862347 |
atatatataatattaatcatcgacaccctttgttgtagttataggattcctcatcattagtctttatcaaccgtttatattaccac |
16862432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1001 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold1001
Description:
Target: scaffold1001; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 165
Target Start/End: Original strand, 1389 - 1545
Alignment:
| Q |
8 |
gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt |
107 |
Q |
| |
|
|||||| ||||||||||||||||||||||| || |||||||||| |||| || ||||||| ||| || ||||| ||||||| | ||||| ||||||| | |
|
|
| T |
1389 |
gacatcgtcattctcatcattattataatataacctcatcattttccattgttgtaatttatttccacatata-aatattaatagtcatcactctctttc |
1487 |
T |
|
| Q |
108 |
atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatc |
165 |
Q |
| |
|
| ||||||||||||| ||| | |||||| |||||||||| ||| ||| ||| ||||| |
|
|
| T |
1488 |
acggttataggactcctcataaatactctatatcatccgcatatgtcatcacattatc |
1545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 159
Target Start/End: Complemental strand, 1567154 - 1567041
Alignment:
| Q |
46 |
tcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatcc |
145 |
Q |
| |
|
||||||| ||||||| | |||| |||||||||||||||||| | ||||||| ||||| ||| | | ||||| || ||| ||| ||||| || |||| || |
|
|
| T |
1567154 |
tcatttctcatcgtatttatttgtttacatatatataatatcaatcgtcatcactctttgtcacaattatatgattcctcattattaccctctatccacc |
1567055 |
T |
|
| Q |
146 |
gcttatatcaccac |
159 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
1567054 |
gtttatatcaccac |
1567041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0290 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0290
Description:
Target: scaffold0290; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 268
Target Start/End: Complemental strand, 14023 - 13972
Alignment:
| Q |
217 |
tattttattttagtattcatctcacagacgtactctattctctcatctattc |
268 |
Q |
| |
|
|||||||||||| ||| ||||||||||| ||||||||| |||||||||||| |
|
|
| T |
14023 |
tattttattttattatctatctcacagacatactctattttctcatctattc |
13972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 268
Target Start/End: Complemental strand, 4619 - 4568
Alignment:
| Q |
217 |
tattttattttagtattcatctcacagacgtactctattctctcatctattc |
268 |
Q |
| |
|
|||||||||||| ||| |||||||||||| || |||||||||||||||||| |
|
|
| T |
4619 |
tattttattttattatccatctcacagacatatcctattctctcatctattc |
4568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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