View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13383_low_18 (Length: 294)
Name: NF13383_low_18
Description: NF13383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13383_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 6640793 - 6640914
Alignment:
| Q |
18 |
attatatggttttgagacttagattgtaacttttagtttcaaatagaatgctataatactatattagttatgatttcaatgtattttgatgcaaatgtag |
117 |
Q |
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| T |
6640793 |
attatatggttttgagacttagattgtaacttttagtttcaaatagaatgctataatactatattagttatgatttcaatgtattttgatgcaaaagtag |
6640892 |
T |
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| Q |
118 |
tgtgatacttctgagcgcaacc |
139 |
Q |
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| T |
6640893 |
tgtgatacttctgagcgcaacc |
6640914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 209 - 282
Target Start/End: Original strand, 6640985 - 6641058
Alignment:
| Q |
209 |
gatacttgtgattcatcttgtttaatattacaaatgtattttgagaaaaaattggaaaattttctacacctgat |
282 |
Q |
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| T |
6640985 |
gatacttgtgattcatcttgtttaatattacaaatgtattttgagaaaaaattggaaaattttctacacctgat |
6641058 |
T |
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Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 8730351 - 8730257
Alignment:
| Q |
18 |
attatatggttttgagacttagattgtaacttttagtttcaaatagaatgctataatactatattagttatgatttcaatgtattttgatgcaaa |
112 |
Q |
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| T |
8730351 |
attatattattttgataatttgattataacttttagtttcaagtacaatgttataatactatattagtaataatttcaatatattttgatgcaaa |
8730257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 9818207 - 9818113
Alignment:
| Q |
18 |
attatatggttttgagacttagattgtaacttttagtttcaaatagaatgctataatactatattagttatgatttcaatgtattttgatgcaaa |
112 |
Q |
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| T |
9818207 |
attatattattttgagaaattgattataatttttagtttcaattataatgttataatactatattagtgataattttaatatattttgatgcaaa |
9818113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 19493811 - 19493728
Alignment:
| Q |
27 |
ttttgagacttagattgtaacttttagtttcaaatagaatgctataatactatattagttatgatttcaatgtattttgatgcaa |
111 |
Q |
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| T |
19493811 |
ttttgagaatttgactataacttttagtttcaagtacaatgttataatactat-ttagtaataatttcaatatattttgatgcaa |
19493728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 19538421 - 19538360
Alignment:
| Q |
209 |
gatacttgtgattcatcttgtttaatattacaaatgtattttgagaaaaaattggaaaattt |
270 |
Q |
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| T |
19538421 |
gatatttgtggttcatcttgtctaatattacaaaagtattttgagaatgaattgggaaattt |
19538360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 10344027 - 10344110
Alignment:
| Q |
27 |
ttttgagacttagattgtaacttttagtttcaaatagaatgctataatactatattagttatgatttcaatgtattttgatgcaaa |
112 |
Q |
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| T |
10344027 |
ttttgagaatttgattataacttttagtttaaagta-aattttataatactat-ttagtaattatttcaatatattttgatgcaaa |
10344110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 46834403 - 46834332
Alignment:
| Q |
39 |
gattgtaacttttagtttcaaatagaatgctataatactatattagttatgatttcaatgtattttgatgcaaa |
112 |
Q |
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| T |
46834403 |
gattataacttttagtttcaagta-aatgttataatacaat-ttagtaattatttcaatatattttgatgcaaa |
46834332 |
T |
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