View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13383_low_19 (Length: 271)

Name: NF13383_low_19
Description: NF13383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13383_low_19
NF13383_low_19
[»] chr3 (22 HSPs)
chr3 (9-254)||(5298800-5299045)
chr3 (10-246)||(5250246-5250482)
chr3 (9-243)||(5268136-5268370)
chr3 (16-246)||(4388659-4388895)
chr3 (16-158)||(8589894-8590036)
chr3 (65-246)||(5280758-5280939)
chr3 (23-158)||(6736155-6736290)
chr3 (23-158)||(6947434-6947569)
chr3 (16-158)||(6448504-6448646)
chr3 (36-168)||(8568690-8568822)
chr3 (23-158)||(6554167-6554302)
chr3 (23-158)||(6479711-6479846)
chr3 (26-153)||(8454824-8454951)
chr3 (26-220)||(8471664-8471858)
chr3 (68-242)||(6591105-6591279)
chr3 (106-243)||(6882609-6882746)
chr3 (86-157)||(6519954-6520025)
chr3 (86-248)||(6265791-6265953)
chr3 (77-167)||(6721852-6721942)
chr3 (26-220)||(6838633-6838827)
chr3 (116-242)||(6142392-6142518)
chr3 (120-220)||(6900216-6900316)
[»] scaffold0425 (1 HSPs)
scaffold0425 (23-158)||(7206-7341)
[»] chr7 (1 HSPs)
chr7 (34-147)||(6573038-6573151)


Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 254
Target Start/End: Complemental strand, 5299045 - 5298800
Alignment:
Q  9 agcagagactaacaggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatgg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5299045 agcagagactaacaggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatgg 5298946  T
Q  109 atctaccggaagtaagattattgtgacaacacgtgacaaggaggtagcatcagtcatgaagtccaccaaacttcttcatttgaagcaattggagaagagt 208  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  5298945 atctaccggaagtaagattattgtgaccacacgtgacaaggaggtagcatcagttatgaagtccaccaaacttcttcatttgaagcaattgaagaagagt 5298846  T
Q  209 gaatgttggagtatgtttatgagacacgcttttcacggcacaaatg 254  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  5298845 gaatgttggagtatgtttgtgagacacgcttttcacggcacaaatg 5298800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 10 - 246
Target Start/End: Complemental strand, 5250482 - 5250246
Alignment:
Q  10 gcagagactaacaggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatgga 109  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||| ||   | |||||    
T  5250482 gcagagactaacaggtaagaaatatcttcttgttttggatgatgtctggaatgggagtgtggaatgttgggagcgcttactacttcccttatgccatgga 5250383  T
Q  110 tctaccggaagtaagattattgtgacaacacgtgacaaggaggtagcatcagtcatgaagtccaccaaacttcttcatttgaagcaattggagaagagtg 209  Q
    ||||| |||||||| |||||||| ||||||||| |||||||||| |||||  ||||||||||||||||    ||| ||||  || ||||| || ||||||    
T  5250382 tctactggaagtaaaattattgttacaacacgtaacaaggaggtggcatctatcatgaagtccaccaaggagcttaatttagagaaattgaaggagagtg 5250283  T
Q  210 aatgttggagtatgtttatgagacacgcttttcacgg 246  Q
    ||||||||||||||||| ||||||| |||||| ||||    
T  5250282 aatgttggagtatgtttgtgagacatgctttttacgg 5250246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 9 - 243
Target Start/End: Complemental strand, 5268370 - 5268136
Alignment:
Q  9 agcagagactaacaggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatgg 108  Q
    ||||| |||||||||| ||||||||  ||||| ||||||||||||||||||| || ||||  |||||||||||||||||| ||||||| ||   | ||||    
T  5268370 agcagggactaacaggcaagaaatacttgctttttttggatgatgtctggaatgggagtgaagaatgttgggagcgcttattacttcccttattccatgg 5268271  T
Q  109 atctaccggaagtaagattattgtgacaacacgtgacaaggaggtagcatcagtcatgaagtccaccaaacttcttcatttgaagcaattggagaagagt 208  Q
    |||| | |||||||| |||||||||||||||||| ||| | |||||||| | |||||||| |||||||||   ||| ||||  || || || || |||||    
T  5268270 atctgctggaagtaaaattattgtgacaacacgtaacatgaaggtagcaactgtcatgaactccaccaaaaaccttaatttagagaaactgaaggagagt 5268171  T
Q  209 gaatgttggagtatgtttatgagacacgcttttca 243  Q
    |||||||||||||||||| || |||| ||||||||    
T  5268170 gaatgttggagtatgtttgtgcgacatgcttttca 5268136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 4388659 - 4388895
Alignment:
Q  16 actaacaggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctacc 115  Q
    |||||| || ||||||||| |||||||||| |||||||||||||| || | || |||| ||||||||||||||||||||||  |   | ||||||||||     
T  4388659 actaactggtaagaaatatttgcttgttttagatgatgtctggaatgggaatgaggaaggttgggagcgcttactacttcccctatgccatggatctact 4388758  T
Q  116 ggaagt------aagattattgtgacaacacgtgacaaggaggtagcatcagtcatgaagtccaccaaacttcttcatttgaagcaattggagaagagtg 209  Q
    ||||||      || |||||||||||||| ||||||||||||||||||||  ||||||||||||||||    ||| ||||  || || || |  | ||||    
T  4388759 ggaagtggaagtaaaattattgtgacaactcgtgacaaggaggtagcatctatcatgaagtccaccaaggagcttaatttagagaaactgaatgaaagtg 4388858  T
Q  210 aatgttggagtatgtttatgagacacgcttttcacgg 246  Q
    |||||||||| |||||| ||||||| |||||||||||    
T  4388859 aatgttggagaatgtttgtgagacatgcttttcacgg 4388895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 8590036 - 8589894
Alignment:
Q  16 actaacaggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctacc 115  Q
    ||||||||| ||||||||  |||||||||| || ||| |||||||||| | ||| |||||||||||||  ||||||||||| |||||| |||||| | |     
T  8590036 actaacaggcaagaaatacttgcttgttttagacgatatctggaacgggaatgcagaatgttgggagcagttactacttccctttaaccatggattttct 8589937  T
Q  116 ggaagtaagattattgtgacaacacgtgacaaggaggtagcat 158  Q
    |||||||||||| | |||||||||||||| |||||||||||||    
T  8589936 ggaagtaagattgtcgtgacaacacgtgaaaaggaggtagcat 8589894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 65 - 246
Target Start/End: Complemental strand, 5280939 - 5280758
Alignment:
Q  65 agtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagtaagattattgtgacaacacgtgacaaggaggtagcatcagtca 164  Q
    |||| |||||||||||| |  ||||||||||| |||||  ||||||||   |||||||||||||||||||| ||||||||||| ||||||||| |||| |    
T  5280939 agtggggaatgttgggaacagttactacttccctttaatcatggatcttttggaagtaagattattgtgaccacacgtgacaaagaggtagcagcagtaa 5280840  T
Q  165 tgaagtccaccaaacttcttcatttgaagcaattggagaagagtgaatgttggagtatgtttatgagacacgcttttcacgg 246  Q
    |||| ||| || || |  |||||||||||||||||||| | || ||  |||||| | | ||| ||||||| |||||||||||    
T  5280839 tgaaatcctcccaaatagttcatttgaagcaattggaggaaagcgatggttggaatttatttgtgagacatgcttttcacgg 5280758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 158
Target Start/End: Complemental strand, 6736290 - 6736155
Alignment:
Q  23 ggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagta 122  Q
    |||||||||||  |||||||||| |||||| ||||||| || ||||  |||| ||||||||   |||||||||| |||||| |||||||| | |||||||    
T  6736290 ggaaagaaatacttgcttgttttagatgatatctggaatgggagtgtagaatattgggagcagctactacttccgtttaaccatggatcttctggaagta 6736191  T
Q  123 agattattgtgacaacacgtgacaaggaggtagcat 158  Q
    | ||||| |||||||||||||| |||||||||||||    
T  6736190 aaattatcgtgacaacacgtgaaaaggaggtagcat 6736155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 158
Target Start/End: Complemental strand, 6947569 - 6947434
Alignment:
Q  23 ggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagta 122  Q
    |||||||||||  |||||||||| |||||| ||||||||||   ||| |||||||||||||  ||||| ||||| |||||| |||||||| | |||||||    
T  6947569 ggaaagaaatacttgcttgttttagatgatatctggaacggggatgcagaatgttgggagctgttacttcttccctttaaccatggatcttctggaagta 6947470  T
Q  123 agattattgtgacaacacgtgacaaggaggtagcat 158  Q
    ||||||| |||||||| ||||| ||||||| |||||    
T  6947469 agattatcgtgacaactcgtgaaaaggaggcagcat 6947434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 6448504 - 6448646
Alignment:
Q  16 actaacaggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctacc 115  Q
    ||||||| ||||||||||  | |||||||| || ||  |||||||||| | ||| ||| |||||||||   |||| ||||| |||||| |||||||| |     
T  6448504 actaacaagaaagaaatactttcttgttttagacgacatctggaacgggaatgcagaacgttgggagcaggtactgcttccgtttaaccatggatcttct 6448603  T
Q  116 ggaagtaagattattgtgacaacacgtgacaaggaggtagcat 158  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  6448604 ggaagtaagattattgtgacaacacgtgaaaaggaggtagcat 6448646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 36 - 168
Target Start/End: Original strand, 8568690 - 8568822
Alignment:
Q  36 tgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagtaagattattgtgac 135  Q
    |||||||| | |||||| ||||||| || | || ||||| ||||||||  ||||||||||| |||||  |||||||| | ||||||||||||||||||||    
T  8568690 tgcttgttctagatgatatctggaatgggaatgaggaattttgggagcagttactacttccatttaatcatggatcttcaggaagtaagattattgtgac 8568789  T
Q  136 aacacgtgacaaggaggtagcatcagtcatgaa 168  Q
    ||||||||||||| | || |||| |||||||||    
T  8568790 aacacgtgacaagcatgttgcattagtcatgaa 8568822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 158
Target Start/End: Original strand, 6554167 - 6554302
Alignment:
Q  23 ggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagta 122  Q
    |||||||||||  |||||||||| |||||| | ||||| || ||||  |||| ||||||||   |||||||||| |||||| |||||||| | |||||||    
T  6554167 ggaaagaaatacttgcttgttttagatgatatatggaatgggagtgtagaatattgggagcagctactacttccgtttaaccatggatcttctggaagta 6554266  T
Q  123 agattattgtgacaacacgtgacaaggaggtagcat 158  Q
     |||||| |||||||||||||| |||||||||||||    
T  6554267 tgattatcgtgacaacacgtgaaaaggaggtagcat 6554302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 23 - 158
Target Start/End: Original strand, 6479711 - 6479846
Alignment:
Q  23 ggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagta 122  Q
    |||||||||||  |||||||||| |||||| ||||||| || | ||  || | ||||||||  ||||||||||| |||||| ||||||||   |||||||    
T  6479711 ggaaagaaatacttgcttgttttagatgatatctggaatgggaatgtagagtattgggagcagttactacttccatttaaccatggatcttttggaagta 6479810  T
Q  123 agattattgtgacaacacgtgacaaggaggtagcat 158  Q
    ||||||| |||||||||||||| |||||||| ||||    
T  6479811 agattatcgtgacaacacgtgaaaaggaggtggcat 6479846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 26 - 153
Target Start/End: Complemental strand, 8454951 - 8454824
Alignment:
Q  26 aagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagtaaga 125  Q
    ||||||||| |||||||||| || ||| ||||||||||   ||||||| ||||||||   ||||||||||| |||||| ||||||||   ||||||||||    
T  8454951 aagaaatatttgcttgttttagacgatatctggaacggggatgcggaacgttgggagttgttactacttccctttaaccatggatcttttggaagtaaga 8454852  T
Q  126 ttattgtgacaacacgtgacaaggaggt 153  Q
    || | |||||||||||||| ||||||||    
T  8454851 ttgtcgtgacaacacgtgagaaggaggt 8454824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 220
Target Start/End: Complemental strand, 8471858 - 8471664
Alignment:
Q  26 aagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagtaaga 125  Q
    ||||| ||||| |||||| ||||||||||||||||    | || |||| ||||||||   ||||||||||| |||||| |||||||| |    |||||||    
T  8471858 aagaactatctacttgttgtggatgatgtctggaaactgaatgaggaaagttgggagaagttactacttccctttaaccatggatcttctacgagtaaga 8471759  T
Q  126 ttattgtgacaacacgtgacaaggaggtagcatcagtcatgaagtccaccaaacttcttcatttgaagcaattggagaagagtgaatgttggagt 220  Q
    |||||||||||||||| ||||| |||||||||| | |  |||| || || ||  |  || ||||||| ||||||||||||||||| |||||||||    
T  8471758 ttattgtgacaacacgcgacaaagaggtagcattaattgtgaaatctacaaagttatttgatttgaaacaattggagaagagtgactgttggagt 8471664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 242
Target Start/End: Original strand, 6591105 - 6591279
Alignment:
Q  68 gcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagtaagattattgtgacaacacgtgacaaggaggtagcatcagtcatga 167  Q
    |||||||||||||||    |||||||||| |||| | |||||||| | ||||||||||| || |||||||| | ||||||||| ||||||||| |||||     
T  6591105 gcggaatgttgggagatgctactacttccgtttagccatggatcttctggaagtaagatgatggtgacaacgcatgacaaggaagtagcatcaatcatgg 6591204  T
Q  168 agtccaccaaacttcttcatttgaagcaattggagaagagtgaatgttggagtatgtttatgagacacgcttttc 242  Q
      |||||| | ||  || |||| || ||||||||| ||||||| | ||||||| | ||| ||||| | |||||||    
T  6591205 gatccacccagctagttgatttaaatcaattggaggagagtgactcttggagtttatttgtgagatatgcttttc 6591279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 243
Target Start/End: Complemental strand, 6882746 - 6882609
Alignment:
Q  106 tggatctaccggaagtaagattattgtgacaacacgtgacaaggaggtagcatcagtcatgaagtccaccaaacttcttcatttgaagcaattggagaag 205  Q
    ||||||| | ||||||||||| ||||||||||||| ||||||||| ||||||||| ||||||  ||||||   ||  | || || |||||||||||| ||    
T  6882746 tggatcttcaggaagtaagatgattgtgacaacacatgacaaggaagtagcatcaatcatgagatccacccggctaatacacttaaagcaattggaggag 6882647  T
Q  206 agtgaatgttggagtatgtttatgagacacgcttttca 243  Q
    ||||| | ||||||| | ||| ||||| | ||||||||    
T  6882646 agtgattcttggagtttatttgtgagatatgcttttca 6882609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 157
Target Start/End: Original strand, 6519954 - 6520025
Alignment:
Q  86 ttactacttccttttaacaatggatctaccggaagtaagattattgtgacaacacgtgacaaggaggtagca 157  Q
    |||||||||||  ||||| |||||||| | |||||||||||||| |||||||||||||| ||| ||||||||    
T  6519954 ttactacttccgcttaaccatggatcttctggaagtaagattatcgtgacaacacgtgaaaagaaggtagca 6520025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 248
Target Start/End: Complemental strand, 6265953 - 6265791
Alignment:
Q  86 ttactacttccttttaacaatggatctaccggaagtaagattattgtgacaacacgtgacaaggaggtagcatcagtcatgaagtccaccaaacttcttc 185  Q
    |||||||||||| |||||  ||||||| |  || ||||||| || |||||||||| |||||  |||||||| | ||| ||||  |||||   ||| ||||    
T  6265953 ttactacttcctcttaaccgtggatcttctcgaggtaagatgatcgtgacaacacatgacagtgaggtagcgttagttatgagatccacacgactacttc 6265854  T
Q  186 atttgaagcaattggagaagagtgaatgttggagtatgtttatgagacacgcttttcacggca 248  Q
    |||| |||||||||||| ||||||| | ||||||| | ||| ||||| | |||||||| ||||    
T  6265853 atttaaagcaattggaggagagtgactcttggagtttatttgtgagatatgcttttcaaggca 6265791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 167
Target Start/End: Original strand, 6721852 - 6721942
Alignment:
Q  77 tgggagcgcttactacttccttttaacaatggatctaccggaagtaagattattgtgacaacacgtgacaaggaggtagcatcagtcatga 167  Q
    |||||||  |||||||||| ||||||   ||||||| | ||||||||||| || ||||||||||| |||||||| ||||||||| ||||||    
T  6721852 tgggagcagttactacttctttttaaatgtggatcttcaggaagtaagatgatcgtgacaacacgggacaaggaagtagcatcaatcatga 6721942  T

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Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 220
Target Start/End: Original strand, 6838633 - 6838827
Alignment:
Q  26 aagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagtaaga 125  Q
    ||||| ||||| |||||| ||||||||||||||||    | || |||| ||||||||   |||||||||||||||||| | |||||| |    |||||||    
T  6838633 aagaactatctacttgttgtggatgatgtctggaaactgaatgaggaaagttgggagacgttactacttccttttaaccaaggatcttctacgagtaaga 6838732  T
Q  126 ttattgtgacaacacgtgacaaggaggtagcatcagtcatgaagtccaccaaacttcttcatttgaagcaattggagaagagtgaatgttggagt 220  Q
    |||||||||||||||| || ||  | ||||||||| |  |||| || || ||  |  || ||||||| |||||||||||||||||  ||||||||    
T  6838733 ttattgtgacaacacgcgataaaaatgtagcatcaattgtgaaatctacaaagttatttgatttgaaacaattggagaagagtgacagttggagt 6838827  T

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Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 242
Target Start/End: Complemental strand, 6142518 - 6142392
Alignment:
Q  116 ggaagtaagattattgtgacaacacgtgacaaggaggtagcatcagtcatgaagtccaccaaacttcttcatttgaagcaattggagaagagtgaatgtt 215  Q
    ||||||||||| ||||||||||||| ||||||||| |||||||||  |||||  ||| |     | ||||||||||||||||||||| ||||| | | ||    
T  6142518 ggaagtaagatgattgtgacaacacatgacaaggaagtagcatcaagcatgagttccgctcggatacttcatttgaagcaattggaggagagtaactctt 6142419  T
Q  216 ggagtatgtttatgagacacgcttttc 242  Q
    ||||| | ||| ||||| | |||||||    
T  6142418 ggagtttatttgtgagatatgcttttc 6142392  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 220
Target Start/End: Complemental strand, 6900316 - 6900216
Alignment:
Q  120 gtaagattattgtgacaacacgtgacaaggaggtagcatcagtcatgaagtccaccaaacttcttcatttgaagcaattggagaagagtgaatgttggag 219  Q
    ||||||| ||||||||||||| ||| | ||| ||||||||| |||| |  || ||  |||| |||||||| || |||||| || ||||||| ||||||||    
T  6900316 gtaagatgattgtgacaacacatgatatggaagtagcatcaatcataagatctacgcaactacttcatttaaaacaattgaaggagagtgattgttggag 6900217  T
Q  220 t 220  Q
    |    
T  6900216 t 6900216  T

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Target: scaffold0425 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 158
Target Start/End: Original strand, 7206 - 7341
Alignment:
Q  23 ggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagta 122  Q
    |||||||||||  |||||||||| |||||| | ||||| || ||||  |||| ||||||||   |||||||||| |||||| |||||||| | |||||||    
T  7206 ggaaagaaatacttgcttgttttagatgatatatggaatgggagtgtagaatattgggagcagctactacttccgtttaaccatggatcttctggaagta 7305  T
Q  123 agattattgtgacaacacgtgacaaggaggtagcat 158  Q
    | ||||| |||||||||||||| |||||||||||||    
T  7306 aaattatcgtgacaacacgtgaaaaggaggtagcat 7341  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 147
Target Start/End: Original strand, 6573038 - 6573151
Alignment:
Q  34 tctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagtaagattattgtg 133  Q
    |||||||||| | |||||||| ||||| || | || ||| |||| |||||  ||||||||| |||| ||| |||||| |   ||||| ||||||||||||    
T  6573038 tctgcttgttctagatgatgtgtggaaagggaatgaggagtgtttggagcaattactactttctttcaaccatggatttttaggaagcaagattattgtg 6573137  T
Q  134 acaacacgtgacaa 147  Q
    ||||||||||||||    
T  6573138 acaacacgtgacaa 6573151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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