View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13383_low_20 (Length: 243)
Name: NF13383_low_20
Description: NF13383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13383_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 34840675 - 34840466
Alignment:
| Q |
16 |
attatactagaaacaaatctttgttaaacaaattaagcaattaaacctaaatctttgttaaaggcactcttttttgaagaaaaaacaagaggattggtaa |
115 |
Q |
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| T |
34840675 |
attatactagaaacaaatctttgttaaacaaattaagcaattaaacctaaatctttgttaaaggcactcttttttgaagaaaaaacaagaggattggtaa |
34840576 |
T |
|
| Q |
116 |
cggacaaaaaagctttatctgtacagtagtagtaacttaaatggtttccacatcataatcatacaaagtagcaatttcttgttgtattcctagttggttt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
34840575 |
cggacaaaaaagctttatctgtacagtagtagtaacttaaatggtttccacatcataatcatacaaagtaacaatttcttgttgtattcctagttgattt |
34840476 |
T |
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| Q |
216 |
tcttttgcac |
225 |
Q |
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|||||||||| |
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| T |
34840475 |
tcttttgcac |
34840466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 80 - 177
Target Start/End: Original strand, 34336132 - 34336232
Alignment:
| Q |
80 |
cactcttttttgaagaaaaaacaagaggattggtaacggacaaaaaagctttatctgt--acagtagtagtaacttaaa-tggtttccacatcataatca |
176 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| ||||||||||||||| |||| |
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| T |
34336132 |
cactcttttttgaagaaaaaacaagaggattggtaacggacaaaaaagctttatctgtacacagtagaagtaaattaaagtggtttccacatcatcatca |
34336231 |
T |
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| Q |
177 |
t |
177 |
Q |
| |
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| |
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|
| T |
34336232 |
t |
34336232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 34334937 - 34334977
Alignment:
| Q |
16 |
attatactagaaacaaatctttgtt-aaacaaattaagcaa |
55 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34334937 |
attatactagaaacaaatctttgttgaaacaaattaagcaa |
34334977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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