View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13383_low_3 (Length: 614)
Name: NF13383_low_3
Description: NF13383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13383_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 518; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 40 - 597
Target Start/End: Complemental strand, 43143467 - 43142910
Alignment:
| Q |
40 |
ctatctcaaactcatatgttgctacagagattggtgaataaaaagaaagaggtagatgtgtaccatatgatattcatagatgcagtaactccataaactt |
139 |
Q |
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| T |
43143467 |
ctatctcaaactcatatgttgctacagagattggagaataaaaagaaagaggtagatgtgtaccatatgatattcatagatgcagtaactccataaactt |
43143368 |
T |
|
| Q |
140 |
ctagatggtaaatcaagagggtatccagtttgaataaatatctgtgaagcaccaaaacagttaaaaacataattcagataaatagaattattattattct |
239 |
Q |
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| T |
43143367 |
ctagatggtaaatcaagagggtatccagtttgaataaatatctgtgaagcaccaaaacagttaaaaacataattcagataaatagaattataattattct |
43143268 |
T |
|
| Q |
240 |
cattaaacacctaactaaaaatataacagaagaaacaaaattgaagtaacacataggggttcttctccatctcacgagtgagcgctccaattgatccagg |
339 |
Q |
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| T |
43143267 |
cattaaacacctaactaaaaatataacagaagaaacaaaaatgaagtaacacctcagggttcttctccatctcacgagtgagcgctccgattgatccagg |
43143168 |
T |
|
| Q |
340 |
atgtatcctaacattgtcatccgaaaacaatacatactttgtgtctttgtgcattttctccaccccaacctgccaaggtgccaataaatactagcgtaat |
439 |
Q |
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| T |
43143167 |
atgtatcctaacatcgtcatccgaaaacaatacatactttgtgtctttgtgcattttctccaccccaacctgccaaggtgccaataaatactagcgtagt |
43143068 |
T |
|
| Q |
440 |
ttacacacatttagcaaggcaagaatatgaatgactcgatttcgatatcaagttatcaacaagttaagataggtgcttcaaatttctatttagattgcaa |
539 |
Q |
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| T |
43143067 |
ttaaacacatttagcaaggcaagaatatgaatgactcgatttcgatatcaagttatcaacaagttaagataggtgcttcaaatttctatttagattgcaa |
43142968 |
T |
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| Q |
540 |
gtgttatggtaggaaatgaaattatatctgaccactagtcaatgaaacaacaaagatc |
597 |
Q |
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| T |
43142967 |
gtgttatggtaggaaatgaaattatatctgaccactagtcaatgaaacaacaaagatc |
43142910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 87 - 425
Target Start/End: Complemental strand, 43155379 - 43155045
Alignment:
| Q |
87 |
agaggtagatgtgtaccatatgatattcatagatgcagtaactccataaacttctagatggtaaatcaagagggtatccagtttgaataaatatctgtga |
186 |
Q |
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| T |
43155379 |
agaggtagatgtgtaccatatgatattcatagatgcagtaactccctaaactgccagatggcaaatcaagagggtatccagtttgaataaatatctgtga |
43155280 |
T |
|
| Q |
187 |
agcaccaaaacagttaaaaaca-----taattcagataaatagaattattattattctcattaaacacctaactaaaaatataaca-gaagaaacaaaat |
280 |
Q |
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| || |||||||||||||| || |||||||| | | ||||||| | |||||||||| ||||| || || |||| ||||||||||||| |
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| T |
43155279 |
aacatcaaaacagttaaaaccacaaaataattcaggttagaagaattact------ctcattaaacgcctaa----aattagaacaagaagaaacaaaat |
43155190 |
T |
|
| Q |
281 |
tgaagtaacacataggggttcttctccatctcacgagtgagcgctccaattgatccaggatgtatcctaacattgtcatccgaaaacaatacatactttg |
380 |
Q |
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|||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
43155189 |
caaagtaatacctcagggttcttctccatctcacgagtgagcgctccaattgatccaggatgtatcctaacatcgtcatccaaaaacaatacatactttg |
43155090 |
T |
|
| Q |
381 |
tgtctttgtgcattttctccaccccaacctgccaaggtgccaata |
425 |
Q |
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|||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
43155089 |
tgtctttgtgcattttctccaccccaacctgccacgatgccaata |
43155045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 564
Target Start/End: Complemental strand, 43154955 - 43154868
Alignment:
| Q |
478 |
atttcgatatcaagttatcaacaagttaagataggtgctt-caaatttctatttagattgcaagtgttatggtaggaaatgaaattat |
564 |
Q |
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| T |
43154955 |
attttgatgtcaaattatcaacaagttaatacaggtgctttcacacttctatttaactggcaagtgttatgctaggaaatgagattat |
43154868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 87 - 184
Target Start/End: Original strand, 33834209 - 33834306
Alignment:
| Q |
87 |
agaggtagatgtgtaccatatgatattcatagatgcagtaactccataaacttctagatggtaaatcaagagggtatccagtttgaataaatatctgt |
184 |
Q |
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|||||||| ||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
33834209 |
agaggtaggtgtgtaccatatggtattcatagatgcagtaactccctaaacttccagatggtaaatcaagaggatatccagtttgtataaatatctgt |
33834306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 412
Target Start/End: Original strand, 33834553 - 33834660
Alignment:
| Q |
305 |
tccatctcacgagtgagcgctccaattgatccaggatgtatcctaacattgtcatccgaaaacaatacatactttgtgtctttgtgcattttctccaccc |
404 |
Q |
| |
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||||||||||||| ||| || || |||||||||||||||| || |||| ||||| ||||||||||||| || ||||||| | ||| ||||||| | |
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| T |
33834553 |
tccatctcacgagcgagtgcacctattgatccaggatgtaggctcacatcatcatctaaaaacaatacatatttgctgtctttatccatggtctccactc |
33834652 |
T |
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| Q |
405 |
caacctgc |
412 |
Q |
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|||||||| |
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| T |
33834653 |
caacctgc |
33834660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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