View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13383_low_5 (Length: 526)
Name: NF13383_low_5
Description: NF13383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13383_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 2 - 506
Target Start/End: Original strand, 1539915 - 1540415
Alignment:
| Q |
2 |
gaggaggagcagagagaccacaagcagcaggaagagtggcagcttttgtaacattcaaaacaacaccaagattagcactgtttttgagagaatcacaaag |
101 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1539915 |
gaggaggagcagagagaccacaagcagcaggaagggtggcagcttttgtaacattcaaaacaacaccaagattagcactgtttttgagagaatcacaaag |
1540014 |
T |
|
| Q |
102 |
acaagtaggagatgttttcagaacagttttcaagccagaacagcatgcccctgatggtttggttatggtactgtcatttgaaacaaatgacaaacaatca |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1540015 |
acaagtaggagatgttttcagaacagttttcaagccagaacagcatgcccctgatggtttggttatggtactgtcatttgaaacaaatgacaaacaatca |
1540114 |
T |
|
| Q |
202 |
gccatgatgacaacaatggttgaacaatcagcagagggtgatggagcatcacgtgctgatgaagcactaggaaaatcaacggcccagatgacaaaaatgc |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1540115 |
gccatgatgacaacaatggttgaacaatcagcagagggtgatggagcatcacgtgctgatgaagcactaggaaaatcaacggcccagatgacaaaaatgg |
1540214 |
T |
|
| Q |
302 |
agagaatgaatgaaaactttgaggccatgatgaa-gaatgagagattgttgtgatgtgtagttagttaaataaagatagtggagaattgtgaagtggaga |
400 |
Q |
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||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1540215 |
agagaatgaatgaaaactttgaggccatggagaaggaatgagagattgttgtgatgtgtagttagttaaataaagatagtggaaaattgtgaagtggaga |
1540314 |
T |
|
| Q |
401 |
gtaatgaggggagtttaaagagaatgactcggtgtgtgttaactgtctttgtgatgtgtataaaataaaatgcatggaaaaaggattctcttgagataga |
500 |
Q |
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| T |
1540315 |
gtaatgaggggagtttaaagagaatgactcggtgtgtgttaactgtctttgtgatgtgt-----ataaaatgcatggaaaaaggattctcttgagataga |
1540409 |
T |
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| Q |
501 |
gattag |
506 |
Q |
| |
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|||||| |
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| T |
1540410 |
gattag |
1540415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 1642129 - 1642084
Alignment:
| Q |
286 |
cagatgacaaaaatgcagagaatgaatgaaaactttgaggccatga |
331 |
Q |
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|||||||||| ||||| |||||||| |||||||||||| ||||||| |
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| T |
1642129 |
cagatgacaataatgctgagaatgagtgaaaactttgatgccatga |
1642084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 29804009 - 29804130
Alignment:
| Q |
25 |
gcagcaggaagagtggcagcttttgtaacattcaaaacaacaccaagattagcactgtttttgagagaatcacaaagacaagtaggagatgttttcagaa |
124 |
Q |
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||||||||||||| | |||||| ||||||||||| |||||||||| | |||||| | |||| || ||||| ||||||| ||||| ||||| || | |
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| T |
29804009 |
gcagcaggaagagaagtagctttggtaacattcaagacaacaccaaactgagcactactcttgaaagcctcacagagacaagaaggagcagttttgagca |
29804108 |
T |
|
| Q |
125 |
cagttttcaagccagaacagca |
146 |
Q |
| |
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||| |||||| ||||||||||| |
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| T |
29804109 |
cagatttcaaaccagaacagca |
29804130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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