View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13383_low_8 (Length: 477)

Name: NF13383_low_8
Description: NF13383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13383_low_8
NF13383_low_8
[»] chr6 (4 HSPs)
chr6 (10-460)||(32296208-32296680)
chr6 (89-225)||(10117109-10117248)
chr6 (121-188)||(9177566-9177633)
chr6 (142-201)||(22509079-22509138)
[»] chr8 (5 HSPs)
chr8 (54-225)||(23490058-23490231)
chr8 (142-211)||(14867355-14867424)
chr8 (153-217)||(7154365-7154429)
chr8 (90-187)||(45191664-45191766)
chr8 (53-85)||(10473879-10473911)
[»] chr2 (6 HSPs)
chr2 (53-225)||(37794740-37794913)
chr2 (50-225)||(17989076-17989253)
chr2 (91-204)||(5428588-5428701)
chr2 (90-194)||(19263717-19263822)
chr2 (149-225)||(35016470-35016545)
chr2 (45-85)||(5428520-5428560)
[»] chr4 (8 HSPs)
chr4 (101-217)||(28146940-28147055)
chr4 (112-227)||(11440557-11440672)
chr4 (91-225)||(38411957-38412092)
chr4 (101-225)||(55606335-55606458)
chr4 (62-217)||(13198177-13198331)
chr4 (141-225)||(25967997-25968080)
chr4 (131-177)||(30839651-30839696)
chr4 (45-85)||(55606497-55606538)
[»] chr1 (9 HSPs)
chr1 (90-226)||(32617657-32617792)
chr1 (78-225)||(34664713-34664859)
chr1 (53-211)||(24699898-24700058)
chr1 (62-199)||(9457534-9457673)
chr1 (62-199)||(9461631-9461770)
chr1 (141-189)||(14081826-14081874)
chr1 (90-176)||(12990282-12990370)
chr1 (170-225)||(12990541-12990595)
chr1 (50-94)||(12990220-12990264)
[»] chr7 (8 HSPs)
chr7 (45-225)||(47363792-47363973)
chr7 (90-225)||(10493498-10493632)
chr7 (90-225)||(25635992-25636127)
chr7 (144-225)||(39653545-39653626)
chr7 (97-225)||(45435345-45435473)
chr7 (111-215)||(33049084-33049187)
chr7 (247-307)||(39653403-39653463)
chr7 (142-193)||(31742876-31742927)
[»] chr5 (11 HSPs)
chr5 (111-225)||(39426177-39426292)
chr5 (111-181)||(22927198-22927268)
chr5 (111-193)||(16341534-16341618)
chr5 (114-194)||(13424755-13424835)
chr5 (79-184)||(19967439-19967546)
chr5 (138-194)||(36491489-36491545)
chr5 (80-225)||(41283422-41283571)
chr5 (142-215)||(20141647-20141720)
chr5 (112-186)||(14355007-14355080)
chr5 (22-85)||(13424853-13424917)
chr5 (50-86)||(41283370-41283406)
[»] chr3 (5 HSPs)
chr3 (91-217)||(7299054-7299181)
chr3 (141-225)||(11783495-11783579)
chr3 (142-211)||(19596541-19596610)
chr3 (155-205)||(21926543-21926593)
chr3 (142-186)||(46475579-46475623)


Alignment Details
Target: chr6 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 10 - 460
Target Start/End: Original strand, 32296208 - 32296680
Alignment:
Q  10 aagaatatgattgcgacaaaaaggtatagataccaacgttaccgtttttacggagtgaacaaaaatcacga----------------------cgaaaaa 87  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||                      ||||| |    
T  32296208 aagaaaatgattgcgacaaaaaggtatagataccaacgttaccgtttttacagagtgaacaaaaatcacgatgaaacaccgttatcgccgtgacgaaaca 32296307  T
Q  88 ttgttacggccacaaaaaatgcggttcatgacaatagacacaaaatctgaatattttttcaattgagatagatgaaaatcatatttttagtacatatttg 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32296308 ttgttacggccacaaaaaatgcggttcatgacaatagacacaaaatctgaatattttttcaattgagatagatgaaaatcatatttttagtacatatttg 32296407  T
Q  188 atcataagttacataatggtatctccttatatagtttaagagttgtgcaatggtgtgaaaccgcgacaaccataatccataacgcaacatctgtaacagc 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  32296408 atcataagttacataatggtatctccttatatagtttaagagttgtacaatggtgtgaaaccgcgacaaccataatccataacgcaacatctgtaacagt 32296507  T
Q  288 caaaattgcaaaattctatatatgatcgcgactattagttaaaaccttggtcattaatgtctgaaatgcgtgaatgtgaaatcatctgtaggcaatatga 387  Q
    |||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32296508 caaaatcgcaaaattctatatacgatcgcgactattagttaaaatcttggtcattaatgtctgaaatacgtgaatgtgaaatcatctgtaggcaatatga 32296607  T
Q  388 attnnnnnnnnnnnnnnnnnnctagtatacttttcttaacccttagtacatgtcggcacgttagagcaaaaac 460  Q
    |||                  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32296608 attaaaaaacaaaaaccaaaactagtatacttttcttaacccttagtacatgtcggcacgttagagcaaaaac 32296680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 89 - 225
Target Start/End: Original strand, 10117109 - 10117248
Alignment:
Q  89 tgttacggccacaaaaaatgcggttcatgacaatagacacaaaatctgaatattttttcaattgagataga-----tgaaaatcatatttttagtacata 183  Q
    ||||| |||| |||||||||  ||||||||||||||||||| |||| | |||||||| |||||||||||||     ||||||||||||||||||||||||    
T  10117109 tgttaaggccgcaaaaaatgtcgttcatgacaatagacacagaatccggatatttttccaattgagatagatgaattgaaaatcatatttttagtacata 10117208  T
Q  184 tttgatcataagttacataatggtatctccttatatagttta 225  Q
    ||||||||||| |||||||||   |||||||||| |||||||    
T  10117209 tttgatcataaattacataat--aatctccttatctagttta 10117248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 121 - 188
Target Start/End: Original strand, 9177566 - 9177633
Alignment:
Q  121 atagacacaaaatctgaatattttttcaattgagatagatgaaaatcatatttttagtacatatttga 188  Q
    ||||||| | |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9177566 atagacatagaatccgaatattttttcaattgagattgatgaaaatcatatttttagtacatatttga 9177633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 22509079 - 22509138
Alignment:
Q  142 tttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataagttacat 201  Q
    |||| ||||| |||| ||||||||||| ||||||||||||| ||||| ||||| ||||||    
T  22509079 ttttccaattaagatggatgaaaatcacatttttagtacatgtttgaacataaattacat 22509138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 7e-50; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 54 - 225
Target Start/End: Complemental strand, 23490231 - 23490058
Alignment:
Q  54 tttttacggagtgaacaaaaatcacgacgaaaaattgttacggccacaaaaaa---tgcggttcatgacaatagacacaaaatctgaatattttttcaat 150  Q
    ||||||| |||||||||||||||||||||||| |||||||||||| |||||||   ||| ||||||||||||||||| |  ||| | |||||||||||||    
T  23490231 tttttacagagtgaacaaaaatcacgacgaaacattgttacggccgcaaaaaaaaatgccgttcatgacaatagacatagcatccggatattttttcaat 23490132  T
Q  151 tgagatagatgaaaatcatatttttagtacatatttgatcataagttacataatggtatctccttatatagttta 225  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||||||| | ||||||||||| |||||||    
T  23490131 tgagatagatgaaaatcatatttttcgtacatatttgatcataaattacataa-gttatctccttatctagttta 23490058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 14867424 - 14867355
Alignment:
Q  142 tttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataagttacataatggtatct 211  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| |||||| ||| |||||    
T  14867424 tttttcaattgagatggatgaaaatcacatttttagtacatatttgaacataaattacatgatgttatct 14867355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 7154429 - 7154365
Alignment:
Q  153 agatagatgaaaatcatatttttagtacatatttgatcataagttacataatggtatctccttat 217  Q
    |||||||||||||||||||||||| ||||||||||||||||  |||||||||  |||||||||||    
T  7154429 agatagatgaaaatcatatttttaatacatatttgatcatatattacataattatatctccttat 7154365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 187
Target Start/End: Complemental strand, 45191766 - 45191664
Alignment:
Q  90 gttacggccacaaaaaatgcggttcatgacaatagacacaaaatctgaatatttttt-----caattgagatagatgaaaatcatatttttagtacatat 184  Q
    ||||||||| | |||||||  |||||||||||| ||||||||||    |||||||||     |||| ||||||| ||||||||||| |||||||||||||    
T  45191766 gttacggccgccaaaaatgtcgttcatgacaatggacacaaaattcagatattttttttcttcaatagagataggtgaaaatcatacttttagtacatat 45191667  T
Q  185 ttg 187  Q
    |||    
T  45191666 ttg 45191664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 10473911 - 10473879
Alignment:
Q  53 gtttttacggagtgaacaaaaatcacgacgaaa 85  Q
    |||||||| ||||||||||||||||||||||||    
T  10473911 gtttttacagagtgaacaaaaatcacgacgaaa 10473879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 53 - 225
Target Start/End: Complemental strand, 37794913 - 37794740
Alignment:
Q  53 gtttttacggagtgaacaaaaatcacgacgaaaaattgttacggc--cacaaaaaatgcggttcatgacaatagacacaaaatctgaatattttttcaat 150  Q
    ||||||||| |||||||||||||||| |||||| |  ||||||||  || ||||||||  ||||||||||| ||||| | |||||| |||||||||||||    
T  37794913 gtttttacgtagtgaacaaaaatcaccacgaaacaccgttacggctgcaaaaaaaatgtcgttcatgacaaaagacatagaatctggatattttttcaat 37794814  T
Q  151 tgagatagatgaaaatcatatttttagtacatatttgatcataagttacataatggtatctccttatatagttta 225  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||| | ||||||||||| |||||||    
T  37794813 tgagatagaagaaaatcatatttttagtacatatttgatcataaattacataa-gttatctccttatctagttta 37794740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 50 - 225
Target Start/End: Complemental strand, 17989253 - 17989076
Alignment:
Q  50 accgtttttacggagtgaacaaaaatcacgacgaaaaattgttacggccacaaaaaat-gcggttcatgacaatagacacaaaatctgaatatttttt-- 146  Q
    |||||||||||  ||||||||||||||||||||||| |  ||||||||| |||||||  || |||||||| |||||||| | |||||| || ||||||      
T  17989253 accgtttttactaagtgaacaaaaatcacgacgaaacaccgttacggccgcaaaaaacagccgttcatgataatagacatagaatctggatttttttttt 17989154  T
Q  147 caattgagatagatgaaaatcatatttttagtacatatttgatcataagttacataatggtatctccttatatagttta 225  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||  ||||||||||| |||||||    
T  17989153 caattgagatcgatgaaaatcatatttttagtacatatttgatcataaattatataat-ttatctccttatctagttta 17989076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 91 - 204
Target Start/End: Original strand, 5428588 - 5428701
Alignment:
Q  91 ttacggccacaaaaaatgcggttcatgacaatagacacaaaatctgaatattttttcaattgagatagatgaaaatcatatttttagtacatatttgatc 190  Q
    ||||| ||||||||||| |  |||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| |||||||||| ||||||    
T  5428588 ttacgcccacaaaaaatacaattcatgacaatagacacaaaatttggatattatttcaattgagatagatgaaaatcatattattagtacataattgatc 5428687  T
Q  191 ataagttacataat 204  Q
    |||| |||||||||    
T  5428688 ataaattacataat 5428701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 90 - 194
Target Start/End: Original strand, 19263717 - 19263822
Alignment:
Q  90 gttacggccacaaaaaa-tgcggttcatgacaatagacacaaaatctgaatattttttcaattgagatagatgaaaatcatatttttagtacatatttga 188  Q
    ||||||||| ||||||| ||  ||||||||||||||| | | ||||   ||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  19263717 gttacggccgcaaaaaactgtcgttcatgacaatagatatagaatcaagatattgtttcaattgagatagatgaaaatcatatttttaatacatatttga 19263816  T
Q  189 tcataa 194  Q
    ||||||    
T  19263817 tcataa 19263822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 35016545 - 35016470
Alignment:
Q  149 attgagatagatgaaaatcatatttttagtacatatttgatcataagttacataatggtatctccttatatagttta 225  Q
    |||||||||||||||||||||||||||  ||||||||||||||||| ||| |||| | ||||||||||| |||||||    
T  35016545 attgagatagatgaaaatcatatttttgatacatatttgatcataaattatataa-gttatctccttatctagttta 35016470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 5428520 - 5428560
Alignment:
Q  45 acgttaccgtttttacggagtgaacaaaaatcacgacgaaa 85  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  5428520 acgttaccgtttttacagagtgaacaaaaatcacgacgaaa 5428560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 6e-38; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 101 - 217
Target Start/End: Original strand, 28146940 - 28147055
Alignment:
Q  101 aaaaaatgcggttcatgacaatagacacaaaatctgaatattttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataagttaca 200  Q
    |||||| || ||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28146940 aaaaaaggccgttcatgacaatagacatagaatctggatattttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataaattaca 28147039  T
Q  201 taatggtatctccttat 217  Q
    ||| | |||||||||||    
T  28147040 taa-gttatctccttat 28147055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 112 - 227
Target Start/End: Original strand, 11440557 - 11440672
Alignment:
Q  112 ttcatgacaatagacacaaaatctgaatattttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataagttacataatggtatct 211  Q
    |||||||||||||||||| | || | ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  11440557 ttcatgacaatagacacatagtccggataatttttcaattaagatagatgaaaatcatatttttagtacatatttgatcataaattacataatgttatct 11440656  T
Q  212 ccttatatagtttaag 227  Q
     |||||||||||||||    
T  11440657 tcttatatagtttaag 11440672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 91 - 225
Target Start/End: Complemental strand, 38412092 - 38411957
Alignment:
Q  91 ttacggccacaaaa-aatgcggttcatgacaatagacacaaaatctgaatattttttcaattgagatagatgaaaatcatatttttagtacatatttgat 189  Q
    |||||||| ||||| ||||  |||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||| |||||| |||||    
T  38412092 ttacggccgcaaaagaatgtcgttcatgacaatagacaccaaatctgaatatcttttcaattaagatagatgaaaatcatatttttactacatacttgat 38411993  T
Q  190 cataagttacataatggtatctccttatatagttta 225  Q
     |||| |||||||||| ||| ||||||| |||||||    
T  38411992 tataaattacataatgttatttccttatctagttta 38411957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 101 - 225
Target Start/End: Complemental strand, 55606458 - 55606335
Alignment:
Q  101 aaaaaatgcggttcatgacaatagacacaaaatctgaatattttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataagttaca 200  Q
    ||||||| | |||||||||||||||||   ||||  ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||    
T  55606458 aaaaaattctgttcatgacaatagacatggaatccaaatattttttcaattgatatagatgaaaattatatttttagtacatatttgatcataaattaca 55606359  T
Q  201 taatggtatctccttatatagttta 225  Q
    ||| | ||| |||||||||||||||    
T  55606358 taa-gttatttccttatatagttta 55606335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 62 - 217
Target Start/End: Complemental strand, 13198331 - 13198177
Alignment:
Q  62 gagtgaacaaaaatcacgacgaaaaattgttacggccacaaaaaatgcggttcatgacaatagacacaaaatctgaatattttttcaattgagatagatg 161  Q
    |||||||||||||||| ||||||| |   ||||||  | ||||||||| |||  | |||| ||||| | |||| | |||||||||||||||||||| |||    
T  13198331 gagtgaacaaaaatcatgacgaaacacgattacggtaaaaaaaaatgccgtttgtaacaaaagacatagaatccggatattttttcaattgagatacatg 13198232  T
Q  162 aaaatcatatttttagtacatatttgatcataagttacataatggtatctccttat 217  Q
    ||||||||||| ||||| ||||||||||||||| |||||||| | |||||||||||    
T  13198231 aaaatcatattcttagtgcatatttgatcataaattacataa-gttatctccttat 13198177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 141 - 225
Target Start/End: Original strand, 25967997 - 25968080
Alignment:
Q  141 ttttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataagttacataatggtatctccttatatagttta 225  Q
    ||||||||||||| |||||||| |||||||||||| ||||||||||||| |||| |||||||| | ||||| ||||| |||||||    
T  25967997 ttttttcaattgatatagatgataatcatatttttggtacatatttgataataaattacataa-gttatcttcttatctagttta 25968080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 177
Target Start/End: Complemental strand, 30839696 - 30839651
Alignment:
Q  131 aatctgaatattttttcaattgagatagatgaaaatcatatttttag 177  Q
    |||||||||||||||| |||||||| |||| ||||||||||||||||    
T  30839696 aatctgaatatttttt-aattgagacagataaaaatcatatttttag 30839651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 55606538 - 55606497
Alignment:
Q  45 acgttaccgttttt-acggagtgaacaaaaatcacgacgaaa 85  Q
    |||||||||||||| || ||||||||||||||||||||||||    
T  55606538 acgttaccgtttttcactgagtgaacaaaaatcacgacgaaa 55606497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 90 - 226
Target Start/End: Complemental strand, 32617792 - 32617657
Alignment:
Q  90 gttacggccacaaaaaatgcggttcatgacaatagacacaaaatctgaatattttttcaattgagatagatgaaaatcatatttttagtacatatttgat 189  Q
    |||||||||  || |||||| ||||||||||||||||| | |||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32617792 gttacggcccaaagaaatgcagttcatgacaatagacatagaatccgggtattttttcaattgagatagatgaaaatcatatttttagtacatatttgat 32617693  T
Q  190 cataagttacataatggtatctccttatatagtttaa 226  Q
    ||||| |||||||| | ||||||||||| ||||||||    
T  32617692 cataaattacataa-gttatctccttatctagtttaa 32617657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 78 - 225
Target Start/End: Original strand, 34664713 - 34664859
Alignment:
Q  78 cgacgaaaaattgttacggccacaaaaaatgcggttcatgacaatagacacaaaatctgaatattttttcaattgagatagatgaaaatcatatttttag 177  Q
    |||||| | |||||||| | | ||||| |||  ||||||||||||||||| | ||  || ||||| ||||||||||||||||||||||||||| ||||||    
T  34664713 cgacgatacattgttacagtcgcaaaagatgtcgttcatgacaatagacatagaaattggatattgtttcaattgagatagatgaaaatcata-ttttag 34664811  T
Q  178 tacatatttgatcataagttacataatggtatctccttatatagttta 225  Q
    ||| ||||||||||||| |||||||| | ||||| ||||| |||||||    
T  34664812 tacgtatttgatcataaattacataacgttatcttcttatctagttta 34664859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 53 - 211
Target Start/End: Complemental strand, 24700058 - 24699898
Alignment:
Q  53 gtttttacggagtgaacaaaaatcacgacgaaaaattgttacggccacaaaaaa--tgcggttcatgacaatagacacaaaatctgaatattttttcaat 150  Q
    |||||||| |||||||||||||||||||||||| |  ||||||||  ||||| |  ||  ||   ||||||||||| ||||| | | |||||||||||||    
T  24700058 gtttttacagagtgaacaaaaatcacgacgaaacaccgttacggcggcaaaatagatgtcgtcattgacaatagacccaaaacccggatattttttcaat 24699959  T
Q  151 tgagatagatgaaaatcatatttttagtacatatttgatcataagttacataatggtatct 211  Q
    |||||||||||||||| |||||||| ||| ||||||||| |||  |||||||||| |||||    
T  24699958 tgagatagatgaaaattatatttttcgtatatatttgataatatattacataatgttatct 24699898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 62 - 199
Target Start/End: Original strand, 9457534 - 9457673
Alignment:
Q  62 gagtgaacaaaaatcacgacgaaaaattgttacggccac-aaaaaatgcggttcatgacaatagacacaaaatctgaata-ttttttcaattgagataga 159  Q
    ||||||||||||||||||||||||    ||||| ||| | ||||||||| ||||||||||||||||| | ||||   ||| |||||||||||||||||||    
T  9457534 gagtgaacaaaaatcacgacgaaacgccgttacagccgcaaaaaaatgccgttcatgacaatagacatagaatccagatatttttttcaattgagataga 9457633  T
Q  160 tgaaaatcatatttttagtacatatttgatcataagttac 199  Q
    | ||||||||||||||  ||||||| ||||||||| ||||    
T  9457634 taaaaatcatatttttgatacatatctgatcataaattac 9457673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 62 - 199
Target Start/End: Original strand, 9461631 - 9461770
Alignment:
Q  62 gagtgaacaaaaatcacgacgaaaaattgttacggccac-aaaaaatgcggttcatgacaatagacacaaaatctgaata-ttttttcaattgagataga 159  Q
    ||||||||||||||||||||||||    ||||| ||| | ||||||||| ||||||||||||||||| | ||||   ||| |||||||||||||||||||    
T  9461631 gagtgaacaaaaatcacgacgaaacgccgttacagccgcaaaaaaatgccgttcatgacaatagacatagaatccagatatttttttcaattgagataga 9461730  T
Q  160 tgaaaatcatatttttagtacatatttgatcataagttac 199  Q
    | ||||||||||||||  ||||||| ||||||||| ||||    
T  9461731 taaaaatcatatttttgatacatatctgatcataaattac 9461770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 141 - 189
Target Start/End: Complemental strand, 14081874 - 14081826
Alignment:
Q  141 ttttttcaattgagatagatgaaaatcatatttttagtacatatttgat 189  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||    
T  14081874 ttttttcaattgagatagatgaaaatcaaatttttagtatatatttgat 14081826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 176
Target Start/End: Original strand, 12990282 - 12990370
Alignment:
Q  90 gttacggccacaaaaaat-gcggttcatgacaatagacacaaaatctgaatatttttt-caattgagatagatgaaaatcatattttta 176  Q
    ||||| |||||||||||| |  ||| ||||||||||||| | |||||| ||||||||| || ||||||| |||||||||||||||||||    
T  12990282 gttacagccacaaaaaattgtcgtttatgacaatagacatagaatctggatattttttgcagttgagatcgatgaaaatcatattttta 12990370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 12990541 - 12990595
Alignment:
Q  170 atttttagtacatatttgatcataagttacataatggtatctccttatatagttta 225  Q
    ||||||| ||||||||||||||||| |||||||||  ||||||||||| |||||||    
T  12990541 atttttaatacatatttgatcataaattacataat-ttatctccttatctagttta 12990595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 12990220 - 12990264
Alignment:
Q  50 accgtttttacggagtgaacaaaaatcacgacgaaaaattgttac 94  Q
    |||||||||| |||||||||||||||||| |||||| || |||||    
T  12990220 accgtttttatggagtgaacaaaaatcacaacgaaacatcgttac 12990264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 45 - 225
Target Start/End: Complemental strand, 47363973 - 47363792
Alignment:
Q  45 acgttaccgtttttacggagtgaacaaaaatcacgacgaaaaattgttacggccacaaaaaat-gcggttcatgacaatagacacaaaatctgaatattt 143  Q
    |||||||||||||||   |||| |||||||||||||||||| |  | |||| || |||||||| || ||||||||||||||||| | |||| | ||||||    
T  47363973 acgttaccgtttttataaagtggacaaaaatcacgacgaaacaccgatacgaccgcaaaaaattgccgttcatgacaatagacatagaatccggatattt 47363874  T
Q  144 tttcaattgagat-agatgaaaatcatatttttagtacatatttgatcataagttacataatggtatctccttatatagttta 225  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||  |||||||| | ||||||||||| |||||||    
T  47363873 tttcaattgagattagatgaaaagcatatttttagtacatatttgatcatagattacataa-gttatctccttatctagttta 47363792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 90 - 225
Target Start/End: Complemental strand, 10493632 - 10493498
Alignment:
Q  90 gttacggccacaaaaaatgcggttcatgacaatagacacaaaatctgaatattttttcaattgagatagatgaaaatcatatttttagtacatatttgat 189  Q
    |||| |||| || |||||||  ||||| |||||||||||| ||| || ||||||||||||||||||| ||||||| ||||||||||| | ||||||||||    
T  10493632 gttaaggccgcataaaatgccattcataacaatagacacataatatgtatattttttcaattgagatggatgaaa-tcatatttttaatgcatatttgat 10493534  T
Q  190 cataagttacataatggtatctccttatatagttta 225  Q
    ||||| |||||||||| |||||||||||||||||||    
T  10493533 cataaattacataatgttatctccttatatagttta 10493498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 90 - 225
Target Start/End: Complemental strand, 25636127 - 25635992
Alignment:
Q  90 gttacggccacaaaaaatgcggttcatgacaatagacacaaaatctgaatattttttcaattgagatagatgaaaatcatatttttagtacatatttgat 189  Q
    |||||||||  ||||||||  ||||||||||||| ||||| |||| |  ||||||||||||||| ||||||||||||||||| |||||||||||||| ||    
T  25636127 gttacggccgtaaaaaatgtcgttcatgacaataaacacataatccgggtattttttcaattgaaatagatgaaaatcatatctttagtacatatttaat 25636028  T
Q  190 cataagttacataatggtatctccttatatagttta 225  Q
    ||||| |||||||||| ||||||||| | |||||||    
T  25636027 cataaattacataatgttatctccttgtctagttta 25635992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 144 - 225
Target Start/End: Complemental strand, 39653626 - 39653545
Alignment:
Q  144 tttcaattgagatagatgaaaatcatatttttagtacatatttgatcataagttacataatggtatctccttatatagttta 225  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||| |||| |||||||    
T  39653626 tttcaattgaaatagatgaacatcatatttttagtacatatttgatcataaattacataatgttatctctttatctagttta 39653545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 97 - 225
Target Start/End: Original strand, 45435345 - 45435473
Alignment:
Q  97 ccacaaaaaatgcggtt-catgacaatagacacaaaatctgaatattttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataag 195  Q
    ||||||||||||||||| |||| ||||| ||||| |||||  |||||||||||||||||||| || ||  |  | ||||||||||||||||||||||||     
T  45435345 ccacaaaaaatgcggttacatgccaataaacacagaatctagatattttttcaattgagatatat-aattttttttttttagtacatatttgatcataaa 45435443  T
Q  196 ttacataatggtatctccttatatagttta 225  Q
    |||||||||| |||||| |||| |||||||    
T  45435444 ttacataatgttatctctttatctagttta 45435473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 33049084 - 33049187
Alignment:
Q  111 gttcatgacaatagacacaaaatctgaatattttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataagttacataatggtatc 210  Q
    ||||||||||||||||| | ||||  | |||||| ||||||||||| ||||||||||| ||||||||||||||||||| ||||| ||||| || | ||||    
T  33049084 gttcatgacaatagacagagaatcccattatttt-tcaattgagatggatgaaaatcacatttttagtacatatttgaacataaattacagaaggttatc 33049182  T
Q  211 tcctt 215  Q
    |||||    
T  33049183 tcctt 33049187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 247 - 307
Target Start/End: Complemental strand, 39653463 - 39653403
Alignment:
Q  247 accgcgacaaccataatccataacgcaacatctgtaacagccaaaattgcaaaattctata 307  Q
    ||||| ||||||| |||||||||||||||||| |||||| ||||||||| |||||||||||    
T  39653463 accgcaacaaccacaatccataacgcaacatcggtaacatccaaaattgtaaaattctata 39653403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 31742876 - 31742927
Alignment:
Q  142 tttttcaattgagatagatgaaaatcatatttttagtacatatttgatcata 193  Q
    ||||||||||||||| ||||||||||| ||||||| ||||||||||| ||||    
T  31742876 tttttcaattgagatggatgaaaatcacatttttaatacatatttgaacata 31742927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 6e-35; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 111 - 225
Target Start/End: Complemental strand, 39426292 - 39426177
Alignment:
Q  111 gttcatgacaatagacacaaaatctgaatattttttcaattgagatagatgaaaatcatat-ttttagtacatatttgatcataagttacataatggtat 209  Q
    ||||||||||||||||| | ||||  ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||  ||    
T  39426292 gttcatgacaatagacatagaatccaaatattttttcaattaagatagatgaaaatcatatattttagtacatatttgatcataaattacataatgtcat 39426193  T
Q  210 ctccttatatagttta 225  Q
    ||||||||||||||||    
T  39426192 ctccttatatagttta 39426177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 111 - 181
Target Start/End: Complemental strand, 22927268 - 22927198
Alignment:
Q  111 gttcatgacaatagacacaaaatctgaatattttttcaattgagatagatgaaaatcatatttttagtaca 181  Q
    ||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||| |||||    
T  22927268 gttcatgacaatagacataaaatccggatattttttcaattgagatagatgaaaatcatattttttgtaca 22927198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 111 - 193
Target Start/End: Complemental strand, 16341618 - 16341534
Alignment:
Q  111 gttcatgacaatagacacaaaatctgaatatttttt--caattgagatagatgaaaatcatatttttagtacatatttgatcata 193  Q
    ||||||||||||||||| | |||| | |||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||    
T  16341618 gttcatgacaatagacatagaatccggatattttttttcaattgagatagatgaaaaacatatttttagtacatatttgatcata 16341534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 13424835 - 13424755
Alignment:
Q  114 catgacaatagacacaaaatctgaatattttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataa 194  Q
    ||||||| |||||| | |||| | |||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||    
T  13424835 catgacagtagacatagaatccggatattttttcaattgaaataaatgaaaataatatttttagtacatatttgatcataa 13424755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 79 - 184
Target Start/End: Original strand, 19967439 - 19967546
Alignment:
Q  79 gacgaaaaattgttacggccacaaaaaa--tgcggttcatgacaatagacacaaaatctgaatattttttcaattgagatagatgaaaatcatattttta 176  Q
    ||||||| | |||||||||| |||||||  ||  ||||| ||||| ||||| | |||| | |||||||||||||||||||| ||||||||||||||||||    
T  19967439 gacgaaacactgttacggccgcaaaaaaaatgttgttcacgacaacagacatagaatccggatattttttcaattgagatatatgaaaatcatattttta 19967538  T
Q  177 gtacatat 184  Q
    ||||||||    
T  19967539 gtacatat 19967546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 36491489 - 36491545
Alignment:
Q  138 atattttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataa 194  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  36491489 atattttttcaattaagatagatgaaaatcatatttttagtacatatttaatcataa 36491545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 225
Target Start/End: Original strand, 41283422 - 41283571
Alignment:
Q  80 acgaaaaattgttacggccacaaaaaat-gcggttcatgacaatagacacaaaatctgaatatttt-----ttcaattgagatagatgaaaatcatattt 173  Q
    |||||| || ||||||||| |||||||| |  | ||||||||||||||| ||||||   |||||||     |||||||||||||||||||||||  ||||    
T  41283422 acgaaacatcgttacggccgcaaaaaattgtcgctcatgacaatagacataaaatccagatattttttttcttcaattgagatagatgaaaatcccattt 41283521  T
Q  174 ttagtacatatttgatcataagttacataatggtatctccttatatagttta 225  Q
    |||||||| || ||||||||| ||| |||| | ||||||||||| |||||||    
T  41283522 ttagtacaaatctgatcataaatta-ataa-gttatctccttatctagttta 41283571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 142 - 215
Target Start/End: Complemental strand, 20141720 - 20141647
Alignment:
Q  142 tttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataagttacataatggtatctcctt 215  Q
    |||||||||| |||| |||||||||||||| |||| |||| |||||| ||||| |||||||||  |||||||||    
T  20141720 tttttcaatttagatggatgaaaatcatatctttattacagatttgaacataaattacataattttatctcctt 20141647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 14355080 - 14355007
Alignment:
Q  112 ttcatgacaatagacacaaaatctgaatat-tttttcaattgagatagatgaaaatcatatttttagtacatattt 186  Q
    |||||||||||||||| ||||||  ||| | ||||||||||||||| ||||||||||| ||||||| |||| ||||    
T  14355080 ttcatgacaatagacataaaatc--aatttatttttcaattgagatggatgaaaatcacatttttaatacaaattt 14355007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 13424917 - 13424853
Alignment:
Q  22 gcgacaaaaaggtatagata-ccaacgttaccgtttttacggagtgaacaaaaatcacgacgaaa 85  Q
    |||| |||||||||||| || || | ||||| ||||||||||||||||||||| ||| |||||||    
T  13424917 gcgaaaaaaaggtataggtagccgatgttactgtttttacggagtgaacaaaattcatgacgaaa 13424853  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 41283370 - 41283406
Alignment:
Q  50 accgtttttacggagtgaacaaaaatcacgacgaaaa 86  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  41283370 accgtttttacagagtgaacaaaaatcacgtcgaaaa 41283406  T

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Target: chr3 (Bit Score: 76; Significance: 6e-35; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 91 - 217
Target Start/End: Original strand, 7299054 - 7299181
Alignment:
Q  91 ttacggccacaaaaaatgcggttcatgacaatagacacaaaatctgaatattttttcaattgagata-gatgaaaatcatatttttagtacatatttgat 189  Q
    |||||||| |||||||||| |||||||||| |||| |||||||| | |||||||||||||||||||| |||||||| |||||||| ||||||||||| ||    
T  7299054 ttacggccgcaaaaaatgccgttcatgacactagagacaaaatccggatattttttcaattgagatacgatgaaaaccatattttaagtacatatttaat 7299153  T
Q  190 cataagttacataatggtatctccttat 217  Q
    ||||| |||||||||| |||||||||||    
T  7299154 cataaattacataatgttatctccttat 7299181  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 11783579 - 11783495
Alignment:
Q  141 ttttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataagttacataatggtatctccttatatagttta 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| | ||||||| | |||||||    
T  11783579 ttttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataaattacacaatgttgtctccttgtctagttta 11783495  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 19596610 - 19596541
Alignment:
Q  142 tttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataagttacataatggtatct 211  Q
    ||||||||||||| | ||| |||||||||||||||||||| |||||| |||||||||||||||| |||||    
T  19596610 tttttcaattgaggtggataaaaatcatatttttagtacaaatttgaacataagttacataatgttatct 19596541  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 21926593 - 21926543
Alignment:
Q  155 atagatgaaaatcatatttttagtacatatttgatcataagttacataatg 205  Q
    |||||||||||||||||||| ||||||||||| ||||||| ||||||||||    
T  21926593 atagatgaaaatcatattttcagtacatatttaatcataaattacataatg 21926543  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 46475579 - 46475623
Alignment:
Q  142 tttttcaattgagatagatgaaaatcatatttttagtacatattt 186  Q
    |||||||||||| || ||||||||||| |||||||||||| ||||    
T  46475579 tttttcaattgatatggatgaaaatcacatttttagtacaaattt 46475623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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