View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13384_low_3 (Length: 345)
Name: NF13384_low_3
Description: NF13384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13384_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 19 - 281
Target Start/End: Complemental strand, 9581731 - 9581469
Alignment:
| Q |
19 |
aaagtgtcttgtcaatttgaattccagagatagcttgaatcggtagcaggccattgtccttgtatcgtcgctgatgattctgtggttctgttttggctca |
118 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9581731 |
aaagtgtcttgtcaatttgaattccagagatcgcttgaatcggtagcaggccattgtccttgtatcgtcgctgatgattctgtggttctgttttggctca |
9581632 |
T |
|
| Q |
119 |
tctggtgctgttttctggtctgctgttgcctgtttttctggtctggaagtttcctgggtcgatcccaccgttgttctgtgcagcgttcaggcttgttgtg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
9581631 |
tctggtgctgttttctggtctgctgttgcctgtttttctggtctggaagtttcctgggtcgatcccaccgtttttctgtgcagcgttcaggcttgttgtg |
9581532 |
T |
|
| Q |
219 |
tgcggcttccttgcggcctagcatggtttgctgaggttgggttaggtgggggcagttggagta |
281 |
Q |
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|| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
9581531 |
tgtggcttccttgcggcctagcatggtttgctgaggttgtgttaggtggaggcagttggagta |
9581469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 19 - 281
Target Start/End: Complemental strand, 9587426 - 9587164
Alignment:
| Q |
19 |
aaagtgtcttgtcaatttgaattccagagatagcttgaatcggtagcaggccattgtccttgtatcgtcgctgatgattctgtggttctgttttggctca |
118 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9587426 |
aaagtgtcttgtcaatttgaattccagagatcgcttgaatcggtagcaggccattgtccttgtatcgtcgctgatgattctgtggttctgttttggctca |
9587327 |
T |
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| Q |
119 |
tctggtgctgttttctggtctgctgttgcctgtttttctggtctggaagtttcctgggtcgatcccaccgttgttctgtgcagcgttcaggcttgttgtg |
218 |
Q |
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| T |
9587326 |
tctggtgctgttttctggtctgctgttgcctgtttttctggtctggaagtttcctgggtcgatcccaccgtttttctgtgcagcgttcaggcttgttgtg |
9587227 |
T |
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| Q |
219 |
tgcggcttccttgcggcctagcatggtttgctgaggttgggttaggtgggggcagttggagta |
281 |
Q |
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|| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
9587226 |
tgtggcttccttgcggcctagcatggtttgctgaggttgtgttaggtggaggcagttggagta |
9587164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 160
Target Start/End: Original strand, 9569713 - 9569828
Alignment:
| Q |
45 |
gagatagcttgaatcggtagcaggccattgtccttgtatcgtcgctgatgattctgtggttctgttttggctcatctggtgctg-ttttctggtctgctg |
143 |
Q |
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||||| |||| |||||||||| ||||||| |||||||||||||||||||| || |||||||||||||||||| ||| | ||| ||||||||||||||| |
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| T |
9569713 |
gagattgctttaatcggtagcgggccattatccttgtatcgtcgctgatgcttatgtggttctgttttggctaatccaggtctgtttttctggtctgctg |
9569812 |
T |
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| Q |
144 |
ttgcctgtttttctggt |
160 |
Q |
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||| |||| |||||||| |
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| T |
9569813 |
ttg-ctgtctttctggt |
9569828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 23 - 209
Target Start/End: Complemental strand, 9606190 - 9605997
Alignment:
| Q |
23 |
tgtcttgtcaatttgaattccagagatagcttgaatcggtagcaggccattgtccttgtatcgtcgctgatgattctgtggttctg-ttttggctcatct |
121 |
Q |
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||||||||||||| |||| | ||||| ||||||||||||||| |||||| |||||||||||| ||||||| || ||| ||||| ||||||||||||| |
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| T |
9606190 |
tgtcttgtcaattagaatctcggagattgcttgaatcggtagcgagccattatccttgtatcgttgctgatgcttatgtccttctgtttttggctcatct |
9606091 |
T |
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| Q |
122 |
ggtgctg-ttttctggtctgctgttgcctgtttttc--tgg----tctggaagtttcctgggtcgatcccaccgttgttctgtgcagcgttcagg |
209 |
Q |
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| T |
9606090 |
gttgctgcttttctggtctgtggttg-ctgtttggcggtgggggttctggaagtttcttgggtcaatcccactgtttttctgtgcagccttcagg |
9605997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 9602309 - 9602197
Alignment:
| Q |
19 |
aaagtgtcttgtcaatttgaattccagagatagcttgaatcggtagcaggccattgtccttgtatcgtcgctgatgattctgtggttctg-ttttggctc |
117 |
Q |
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||||||||||||||||| ||| || ||||| ||| |||||||||| ||||||| |||||||||||||||||||| | | ||||| || ||||||||| |
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| T |
9602309 |
aaagtgtcttgtcaattggaaccccggagatttcttaaatcggtagcgggccattatccttgtatcgtcgctgatgcatatatggttttgtttttggctc |
9602210 |
T |
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| Q |
118 |
atctggtgctgtt |
130 |
Q |
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||||||||||||| |
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| T |
9602209 |
atctggtgctgtt |
9602197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 160 - 237
Target Start/End: Original strand, 9569856 - 9569933
Alignment:
| Q |
160 |
tctggaagtttcctgggtcgatcccaccgttgttctgtgcagcgttcaggcttgttgtgtgcggcttccttgcggcct |
237 |
Q |
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|||||||||||| | |||||||||||||||| ||||| ||||| | |||||||||| | ||||||||||||| ||||| |
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| T |
9569856 |
tctggaagtttcttcggtcgatcccaccgtttttctgggcagcctccaggcttgttttttgcggcttccttgtggcct |
9569933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 9593384 - 9593296
Alignment:
| Q |
160 |
tctggaagtttcctgggtcgatcccaccgttgttctgtgcagcgttcaggcttgttgtgtgcggcttccttgcggcctagcatggtttg |
248 |
Q |
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||||||||| || || ||| ||||||||||| || |||||||| |||||||||||| ||||||||||||| | |||||| || |||||| |
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| T |
9593384 |
tctggaagtgtcttgagtctatcccaccgtttttatgtgcagctttcaggcttgttttgtgcggcttcctcgtggcctatcaaggtttg |
9593296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 9593514 - 9593420
Alignment:
| Q |
19 |
aaagtgtcttgtcaatttgaattcca-gagatagcttgaatcggtagcaggccattgtccttgtatcgtcgctgatgattctgtggttctgtttt |
112 |
Q |
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||||||||||||||||| ||||||| ||||| ||||||||||||||| || |||| ||||||||| || ||| ||| || ||||||| |||||| |
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| T |
9593514 |
aaagtgtcttgtcaattggaattccctgagattgcttgaatcggtagcgggtcattatccttgtattgttgctcatgcttatgtggttttgtttt |
9593420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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