View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13385_high_3 (Length: 349)

Name: NF13385_high_3
Description: NF13385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13385_high_3
NF13385_high_3
[»] chr8 (3 HSPs)
chr8 (24-339)||(26291315-26291630)
chr8 (24-339)||(26304572-26304887)
chr8 (24-339)||(26337927-26338242)
[»] scaffold0438 (1 HSPs)
scaffold0438 (24-339)||(5695-6011)
[»] chr3 (12 HSPs)
chr3 (35-339)||(8032704-8033008)
chr3 (39-250)||(476426-476643)
chr3 (37-242)||(5360524-5360729)
chr3 (126-252)||(1186729-1186855)
chr3 (126-252)||(1204793-1204919)
chr3 (126-252)||(1304171-1304297)
chr3 (122-254)||(481451-481580)
chr3 (39-92)||(481344-481397)
chr3 (299-339)||(5360439-5360479)
chr3 (285-339)||(1186882-1186936)
chr3 (285-339)||(1204946-1205000)
chr3 (285-339)||(1304090-1304144)
[»] chr5 (1 HSPs)
chr5 (29-134)||(33957677-33957782)
[»] chr2 (5 HSPs)
chr2 (113-242)||(43874722-43874848)
chr2 (126-242)||(43867038-43867151)
chr2 (113-242)||(38989581-38989707)
chr2 (293-342)||(38989743-38989792)
chr2 (193-242)||(43863563-43863612)
[»] chr4 (1 HSPs)
chr4 (293-342)||(52187457-52187506)


Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-169; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 24 - 339
Target Start/End: Original strand, 26291315 - 26291630
Alignment:
Q  24 ggtcctcgctttgaccaaatatttccacattctctcagtttcccagcattaaccactctgtctctaaagcacctcgtctttggttgcaatgatgatggtt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26291315 ggtcctcgctttgaccaaatatttccacattctctcagtttcccaacattaaccactctgtctctaaagcacctcgtctttggttgcaatgatgatggtt 26291414  T
Q  124 gtgtcgatcctttttccacattcaacatgttgactactttgatcattgacaaatgtgtacttgttgacaatgcacaaaaccttcgcatttcaaataccaa 223  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26291415 gtgttgatcctttttccacattcaacatgttgactactttgatcattgacaaatgtgtacttgttgacaatgcacaaaaccttcgcatttcaagtaccaa 26291514  T
Q  224 gcttgtcaatttaactatatgtgtgtatgatttcttgtctggtttcaatcctagaactgccgatttcgaaatctattttggaatcgagttatatgctcca 323  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26291515 gcttgtcaatttaactatatgtgtgtatgatttcttgtctggttgcaatcctagaactgccgatttcgaaatctattttggaatcgagttatatgctcca 26291614  T
Q  324 acacttcatacctttg 339  Q
    ||||||||||||||||    
T  26291615 acacttcatacctttg 26291630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 24 - 339
Target Start/End: Original strand, 26304572 - 26304887
Alignment:
Q  24 ggtcctcgctttgaccaaatatttccacattctctcagtttcccagcattaaccactctgtctctaaagcacctcgtctttggttgcaatgatgatggtt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26304572 ggtcctcgctttgaccaaatatttccacattctctcagtttcccaacattaaccactctgtctctaaagcacctcgtctttggttgcaatgatgatggtt 26304671  T
Q  124 gtgtcgatcctttttccacattcaacatgttgactactttgatcattgacaaatgtgtacttgttgacaatgcacaaaaccttcgcatttcaaataccaa 223  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26304672 gtgttgatcctttttccacattcaacatgttgactactttgatcattgacaaatgtgtacttgttgacaatgcacaaaaccttcgcatttcaagtaccaa 26304771  T
Q  224 gcttgtcaatttaactatatgtgtgtatgatttcttgtctggtttcaatcctagaactgccgatttcgaaatctattttggaatcgagttatatgctcca 323  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26304772 gcttgtcaatttaactatatgtgtgtatgatttcttgtctggttgcaatcctagaactgccgatttcgaaatctattttggaatcgagttatatgctcca 26304871  T
Q  324 acacttcatacctttg 339  Q
    ||||||||||||||||    
T  26304872 acacttcatacctttg 26304887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 24 - 339
Target Start/End: Original strand, 26337927 - 26338242
Alignment:
Q  24 ggtcctcgctttgaccaaatatttccacattctctcagtttcccagcattaaccactctgtctctaaagcacctcgtctttggttgcaatgatgatggtt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26337927 ggtcctcgctttgaccaaatatttccacattctctcagtttcccaacattaaccactctgtctctaaagcacctcgtctttggttgcaatgatgatggtt 26338026  T
Q  124 gtgtcgatcctttttccacattcaacatgttgactactttgatcattgacaaatgtgtacttgttgacaatgcacaaaaccttcgcatttcaaataccaa 223  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26338027 gtgttgatcctttttccacattcaacatgttgactactttgatcattgacaaatgtgtacttgttgacaatgcacaaaaccttcgcatttcaagtaccaa 26338126  T
Q  224 gcttgtcaatttaactatatgtgtgtatgatttcttgtctggtttcaatcctagaactgccgatttcgaaatctattttggaatcgagttatatgctcca 323  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26338127 gcttgtcaatttaactatatgtgtgtatgatttcttgtctggttgcaatcctagaactgccgatttcgaaatctattttggaatcgagttatatgctcca 26338226  T
Q  324 acacttcatacctttg 339  Q
    ||||||||||||||||    
T  26338227 acacttcatacctttg 26338242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 24 - 339
Target Start/End: Original strand, 5695 - 6011
Alignment:
Q  24 ggtcctcgctttgaccaaatatttc-cacattctctcagtttcccagcattaaccactctgtctctaaagcacctcgtctttggttgcaatgatgatggt 122  Q
    ||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5695 ggtcctcgctttgaccaaatatttgtcacattctctcagtttcccaacattaaccactctgtctctaaagcacctcgtctttggttgcaatgatgatggt 5794  T
Q  123 tgtgtcgatcctttttccacattcaacatgttgactactttgatcattgacaaatgtgtacttgttgacaatgcacaaaaccttcgcatttcaaatacca 222  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5795 tgtgttgatcctttttccacattcaacatgttgactactttgatcattgacaaatgtgtacttgttgacaatgcacaaaaccttcgcatttcaagtacca 5894  T
Q  223 agcttgtcaatttaactatatgtgtgtatgatttcttgtctggtttcaatcctagaactgccgatttcgaaatctattttggaatcgagttatatgctcc 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5895 agcttgtcaatttaactatatgtgtgtatgatttcttgtctggttgcaatcctagaactgccgatttcgaaatctattttggaatcgagttatatgctcc 5994  T
Q  323 aacacttcatacctttg 339  Q
    |||||||||| ||||||    
T  5995 aacacttcattcctttg 6011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 35 - 339
Target Start/End: Complemental strand, 8033008 - 8032704
Alignment:
Q  35 tgaccaaatatttccacattctctcagtttcccagcattaaccactctgtctctaaagcacctcgtctttggttgcaatgatgatggttgtgtcgatcct 134  Q
    |||||||||||||||| |||||||||  ||||| | ||||||||||||   |||||||||| | |  ||| || |||||||||||||||||||||||||     
T  8033008 tgaccaaatatttccatattctctcaagttcccggtattaaccactctaattctaaagcacgttgcttttcgtcgcaatgatgatggttgtgtcgatccc 8032909  T
Q  135 ttttccacattcaacatgttgactactttgatcattgacaaatgtgtacttgttgacaatgcacaaaaccttcgcatttcaaataccaagcttgtcaatt 234  Q
    |||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8032908 ttttctgcatttaacatgttgactactttgatcattgacaaatgtgtacttgttgacaatgcacaaaaccttcgcatttcaaataccaagcttgtcaatt 8032809  T
Q  235 taactatatgtgtgtatgatttcttgtctggtttcaatcctagaactgccgatttcgaaatctattttggaatcgagttatatgctccaacacttcatac 334  Q
    ||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8032808 taactatatgtgtgtataatttcttgtctggttgtaatcctagaactgccgatttcgaaatctattttggaatcaagttatatgctccaacacttcatac 8032709  T
Q  335 ctttg 339  Q
     ||||    
T  8032708 atttg 8032704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 39 - 250
Target Start/End: Original strand, 476426 - 476643
Alignment:
Q  39 caaatatttccacattctctcagtttcccagcattaaccactctgtctctaaagcacctcgtctttggttgca---------atgatgatggttgtgtcg 129  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||| ||| ||| | |||| |||||          ||||||||||||| ||||    
T  476426 caaatatttccaaattctctcaatttcccagcattaaccactctgtctctagagcgccttgcctttcgttgcggcacaagtgatgatgatggttgcgtcg 476525  T
Q  130 atcctttttccacattcaacatgttgactactttgatcattgacaaatgtgtacttgttgacaatgcacaaaaccttcgcatttcaaataccaagcttgt 229  Q
    | || ||||||||||| |||||||||| ||||||||||||||||  ||||||| || | |   |||||||||||||||||||||||| |||||||||| |    
T  476526 accccttttccacatttaacatgttgaatactttgatcattgacttatgtgtaattctgg---atgcacaaaaccttcgcatttcaagtaccaagcttct 476622  T
Q  230 caatttaactatatgtgtgta 250  Q
    |||||||||||||||| ||||    
T  476623 caatttaactatatgtatgta 476643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 37 - 242
Target Start/End: Complemental strand, 5360729 - 5360524
Alignment:
Q  37 accaaatatttccacattctctcagtttcccagcattaaccactctgtctctaaagcacctcgtctttggttgcaatgatgatggttgtgtcgatccttt 136  Q
    |||||| ||||||| ||||||||| ||||||||||||||||||| |||||||||||  ||| | ||||  | ||||||||||||||| |||||| || ||    
T  5360729 accaaagatttccagattctctcaatttcccagcattaaccactttgtctctaaagagccttgccttttatcgcaatgatgatggttttgtcgacccctt 5360630  T
Q  137 ttccacattcaacatgttgactactttgatcattgacaaatgtgtacttgttgacaatgcacaaaaccttcgcatttcaaataccaagcttgtcaattta 236  Q
    ||||  ||| ||||||||| ||||||||| |||||||   ||||||||| |||  ||||||||||||| ||| ||||||| |||||||| ||| ||||||    
T  5360629 ttccgaatttaacatgttgtctactttgagcattgaccgctgtgtacttcttgctaatgcacaaaaccatcgtatttcaagtaccaagcctgttaattta 5360530  T
Q  237 actata 242  Q
    ||||||    
T  5360529 actata 5360524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 126 - 252
Target Start/End: Original strand, 1186729 - 1186855
Alignment:
Q  126 gtcgatcctttttccacattcaacatgttgactactttgatcattgacaaatgtgtacttgttgacaatgcacaaaaccttcgcatttcaaataccaagc 225  Q
    ||||| || ||||||||||| |||||||||| ||||||||||||||||   |||||||||   |  ||||||||||||||||||||||||  ||||||||    
T  1186729 gtcgaccccttttccacatttaacatgttgaatactttgatcattgaccgctgtgtacttaggggtaatgcacaaaaccttcgcatttcatgtaccaagc 1186828  T
Q  226 ttgtcaatttaactatatgtgtgtatg 252  Q
    || |||||||||||||| || ||||||    
T  1186829 ttctcaatttaactatacgtatgtatg 1186855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 126 - 252
Target Start/End: Original strand, 1204793 - 1204919
Alignment:
Q  126 gtcgatcctttttccacattcaacatgttgactactttgatcattgacaaatgtgtacttgttgacaatgcacaaaaccttcgcatttcaaataccaagc 225  Q
    ||||| || ||||||||||| |||||||||| ||||||||||||||||   |||||||||   |  ||||||||||||||||||||||||  ||||||||    
T  1204793 gtcgaccccttttccacatttaacatgttgaatactttgatcattgaccgctgtgtacttaggggtaatgcacaaaaccttcgcatttcatgtaccaagc 1204892  T
Q  226 ttgtcaatttaactatatgtgtgtatg 252  Q
    || |||||||||||||| || ||||||    
T  1204893 ttctcaatttaactatacgtatgtatg 1204919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 126 - 252
Target Start/End: Complemental strand, 1304297 - 1304171
Alignment:
Q  126 gtcgatcctttttccacattcaacatgttgactactttgatcattgacaaatgtgtacttgttgacaatgcacaaaaccttcgcatttcaaataccaagc 225  Q
    ||||| || ||||||||||| |||||||||| ||||||||||||||||   |||||||||   |  ||||||||||||||||||||||||  ||||||||    
T  1304297 gtcgaccccttttccacatttaacatgttgaatactttgatcattgaccgctgtgtacttaggggtaatgcacaaaaccttcgcatttcatgtaccaagc 1304198  T
Q  226 ttgtcaatttaactatatgtgtgtatg 252  Q
    || |||||||||||||| || ||||||    
T  1304197 ttctcaatttaactatacgtatgtatg 1304171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 122 - 254
Target Start/End: Original strand, 481451 - 481580
Alignment:
Q  122 ttgtgtcgatcctttttccacattcaacatgttgactactttgatcattgacaaatgtgtacttgttgacaatgcacaaaaccttcgcatttcaaatacc 221  Q
    ||||||||| || |||||| |||| |||||||||  ||||||||||||||||   ||||||||| | ||   ||||| ||||||| ||||||||| ||||    
T  481451 ttgtgtcgaccccttttccgcatttaacatgttggatactttgatcattgactgctgtgtacttctgga---tgcacgaaacctttgcatttcaagtacc 481547  T
Q  222 aagcttgtcaatttaactatatgtgtgtatgat 254  Q
    |||||| ||| ||||||||||||| ||||||||    
T  481548 aagcttctcagtttaactatatgtatgtatgat 481580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 481344 - 481397
Alignment:
Q  39 caaatatttccacattctctcagtttcccagcattaaccactctgtctctaaag 92  Q
    |||||||||||| ||| ||||| ||||||||||||||||||| |||||||||||    
T  481344 caaatatttccaaattttctcaatttcccagcattaaccactttgtctctaaag 481397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 299 - 339
Target Start/End: Complemental strand, 5360479 - 5360439
Alignment:
Q  299 ttttggaatcgagttatatgctccaacacttcatacctttg 339  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  5360479 ttttggaatcgagttatatgctccaacaattcatacctttg 5360439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 1186882 - 1186936
Alignment:
Q  285 gatttcgaaatctattttggaatcgagttatatgctccaacacttcatacctttg 339  Q
    |||||| |||||| ||| ||| | |||||||||||||||||||||||| ||||||    
T  1186882 gatttcaaaatctttttcggactagagttatatgctccaacacttcattcctttg 1186936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 1204946 - 1205000
Alignment:
Q  285 gatttcgaaatctattttggaatcgagttatatgctccaacacttcatacctttg 339  Q
    |||||| |||||| ||| ||| | |||||||||||||||||||||||| ||||||    
T  1204946 gatttcaaaatctttttcggactagagttatatgctccaacacttcattcctttg 1205000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 1304144 - 1304090
Alignment:
Q  285 gatttcgaaatctattttggaatcgagttatatgctccaacacttcatacctttg 339  Q
    |||||| |||||| ||| ||| | |||||||||||||||||||||||| ||||||    
T  1304144 gatttcaaaatctttttcggactagagttatatgctccaacacttcattcctttg 1304090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 29 - 134
Target Start/End: Complemental strand, 33957782 - 33957677
Alignment:
Q  29 tcgctttgaccaaatatttccacattctctcagtttcccagcattaaccactctgtctctaaagcacctcgtctttggttgcaatgatgatggttgtgtc 128  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  33957782 tcgcattgaccaaatatttccacattctctcagtttcccagcattaaccactctgtctctaaagcaccttgcctttggttgcaatgatgatggttgtgtc 33957683  T
Q  129 gatcct 134  Q
    ||||||    
T  33957682 gatcct 33957677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 242
Target Start/End: Complemental strand, 43874848 - 43874722
Alignment:
Q  113 tgatgatggttgtgtcgatcctttttccacattcaacatgttgactactttgatcattgacaaatgtgtacttgttgacaatgcacaaaaccttcgcatt 212  Q
    ||||||||| |||||||| || ||||| ||||| |||||||||| |  ||||||||||||||  ||| ||   ||| |  |||||||||||||| ||||     
T  43874848 tgatgatggctgtgtcgagcccttttcaacatttaacatgttgaatcgtttgatcattgacagttgttta---gttcaggatgcacaaaacctttgcata 43874752  T
Q  213 tcaaataccaagcttgtcaatttaactata 242  Q
    |||| |||||||||||||||||||||||||    
T  43874751 tcaagtaccaagcttgtcaatttaactata 43874722  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 126 - 242
Target Start/End: Complemental strand, 43867151 - 43867038
Alignment:
Q  126 gtcgatcctttttccacattcaacatgttgactactttgatcattgacaaatgtgtacttgttgacaatgcacaaaaccttcgcatttcaaataccaagc 225  Q
    ||||| || ||||| ||||| |||||||||| |  ||||||||||||||  ||| ||   ||| |  |||||||||||||| |||| |||| ||||||||    
T  43867151 gtcgagcccttttcgacatttaacatgttgaatcgtttgatcattgacagttgtata---gttcaggatgcacaaaacctttgcatatcaagtaccaagc 43867055  T
Q  226 ttgtcaatttaactata 242  Q
    |||||||||||||||||    
T  43867054 ttgtcaatttaactata 43867038  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 242
Target Start/End: Original strand, 38989581 - 38989707
Alignment:
Q  113 tgatgatggttgtgtcgatcctttttccacattcaacatgttgactactttgatcattgacaaatgtgtacttgttgacaatgcacaaaaccttcgcatt 212  Q
    |||| |||||||||| || || ||||||||||| || ||||||| || |||||||||||||   ||| || || | |||   |||||||| ||| ||||     
T  38989581 tgataatggttgtgttgagcccttttccacatttaaaatgttgaatagtttgatcattgactgttgtatagttctggac---gcacaaaatctttgcata 38989677  T
Q  213 tcaaataccaagcttgtcaatttaactata 242  Q
    |||| |||||||||||||||||||| ||||    
T  38989678 tcaagtaccaagcttgtcaatttaagtata 38989707  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 342
Target Start/End: Original strand, 38989743 - 38989792
Alignment:
Q  293 aatctattttggaatcgagttatatgctccaacacttcatacctttgctt 342  Q
    ||||||||||||||||||| ||||||||||||  ||||||| ||||||||    
T  38989743 aatctattttggaatcgagctatatgctccaagtcttcataactttgctt 38989792  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 43863612 - 43863563
Alignment:
Q  193 atgcacaaaaccttcgcatttcaaataccaagcttgtcaatttaactata 242  Q
    |||||||||||||| |||| |||| ||||| |||||||||||||||||||    
T  43863612 atgcacaaaacctttgcatatcaagtaccaggcttgtcaatttaactata 43863563  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 342
Target Start/End: Original strand, 52187457 - 52187506
Alignment:
Q  293 aatctattttggaatcgagttatatgctccaacacttcatacctttgctt 342  Q
    ||||||||||||||| ||| ||||||||||||  ||||||||||||||||    
T  52187457 aatctattttggaattgagctatatgctccaagtcttcatacctttgctt 52187506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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