View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13385_low_1 (Length: 551)

Name: NF13385_low_1
Description: NF13385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13385_low_1
NF13385_low_1
[»] chr1 (38 HSPs)
chr1 (203-382)||(49712450-49712629)
chr1 (20-142)||(51765628-51765750)
chr1 (20-160)||(13316151-13316291)
chr1 (421-543)||(49655037-49655162)
chr1 (20-144)||(8550599-8550723)
chr1 (30-160)||(20762907-20763037)
chr1 (20-144)||(49918579-49918703)
chr1 (20-131)||(3157094-3157205)
chr1 (26-160)||(9987439-9987579)
chr1 (20-144)||(833985-834108)
chr1 (24-144)||(10925455-10925575)
chr1 (20-144)||(44455389-44455513)
chr1 (26-140)||(20622052-20622168)
chr1 (20-144)||(37559679-37559805)
chr1 (26-160)||(21054195-21054335)
chr1 (23-144)||(31659470-31659591)
chr1 (20-144)||(40122016-40122139)
chr1 (26-140)||(40282614-40282731)
chr1 (20-144)||(13137795-13137919)
chr1 (20-133)||(28223248-28223360)
chr1 (20-144)||(37503377-37503496)
chr1 (20-144)||(50166995-50167118)
chr1 (21-136)||(196733-196847)
chr1 (485-543)||(49712626-49712684)
chr1 (20-142)||(50169032-50169153)
chr1 (80-144)||(45644173-45644237)
chr1 (26-139)||(9036655-9036770)
chr1 (20-144)||(28220041-28220165)
chr1 (23-144)||(28265374-28265494)
chr1 (20-144)||(23555086-23555209)
chr1 (20-144)||(3846936-3847062)
chr1 (89-144)||(13659166-13659221)
chr1 (89-142)||(3189642-3189695)
chr1 (89-142)||(3198459-3198512)
chr1 (89-142)||(3207298-3207351)
chr1 (89-144)||(30476261-30476317)
chr1 (161-196)||(49712083-49712118)
chr1 (91-119)||(15820596-15820624)
[»] chr2 (28 HSPs)
chr2 (20-160)||(32289797-32289937)
chr2 (20-161)||(4484127-4484267)
chr2 (20-161)||(4502932-4503072)
chr2 (20-161)||(36205463-36205604)
chr2 (20-136)||(30833577-30833693)
chr2 (25-141)||(5723074-5723190)
chr2 (20-144)||(36987890-36988014)
chr2 (20-160)||(45099983-45100122)
chr2 (20-144)||(17057184-17057308)
chr2 (20-144)||(17085167-17085291)
chr2 (20-144)||(723562-723685)
chr2 (20-144)||(6594819-6594943)
chr2 (20-144)||(38312469-38312593)
chr2 (20-144)||(14633643-14633766)
chr2 (20-144)||(34139588-34139711)
chr2 (20-144)||(42362575-42362698)
chr2 (29-140)||(6266932-6267043)
chr2 (20-118)||(2838175-2838272)
chr2 (20-118)||(11067530-11067627)
chr2 (20-144)||(2334233-2334356)
chr2 (20-144)||(24885815-24885938)
chr2 (80-144)||(33162269-33162333)
chr2 (80-160)||(36773847-36773926)
chr2 (20-143)||(14202240-14202362)
chr2 (91-144)||(11690787-11690841)
chr2 (20-61)||(1345692-1345733)
chr2 (79-117)||(12123434-12123472)
chr2 (92-136)||(29868169-29868213)
[»] chr5 (32 HSPs)
chr5 (20-160)||(26178115-26178255)
chr5 (20-142)||(16409708-16409830)
chr5 (29-160)||(18441441-18441571)
chr5 (20-160)||(30182817-30182957)
chr5 (29-160)||(9789021-9789151)
chr5 (20-152)||(26170995-26171127)
chr5 (20-141)||(36073861-36073982)
chr5 (20-136)||(13343289-13343405)
chr5 (20-144)||(30682737-30682862)
chr5 (20-135)||(39468373-39468488)
chr5 (24-161)||(25412993-25413130)
chr5 (20-144)||(42428245-42428369)
chr5 (20-161)||(16649634-16649773)
chr5 (20-144)||(42426050-42426174)
chr5 (20-144)||(5887250-5887373)
chr5 (20-136)||(13488430-13488545)
chr5 (26-160)||(29720601-29720743)
chr5 (20-144)||(33831908-33832031)
chr5 (20-143)||(8565764-8565889)
chr5 (26-161)||(29722761-29722904)
chr5 (20-144)||(13239981-13240104)
chr5 (89-144)||(28750470-28750526)
chr5 (20-120)||(42927122-42927221)
chr5 (26-139)||(22536108-22536221)
chr5 (91-144)||(31183273-31183326)
chr5 (89-144)||(534056-534112)
chr5 (80-136)||(3075573-3075629)
chr5 (20-144)||(538250-538374)
chr5 (89-134)||(19806660-19806705)
chr5 (26-139)||(29750973-29751090)
chr5 (91-136)||(32637123-32637168)
chr5 (20-64)||(32637053-32637097)
[»] chr8 (30 HSPs)
chr8 (26-160)||(2627973-2628108)
chr8 (20-160)||(19945158-19945298)
chr8 (20-160)||(31218486-31218625)
chr8 (20-161)||(30143569-30143709)
chr8 (20-160)||(17982882-17983021)
chr8 (20-160)||(44304084-44304224)
chr8 (23-160)||(1746018-1746155)
chr8 (24-141)||(34254149-34254266)
chr8 (20-162)||(15213015-15213157)
chr8 (20-142)||(42498424-42498546)
chr8 (20-142)||(27811507-27811631)
chr8 (24-141)||(34256325-34256442)
chr8 (20-144)||(4731887-4732011)
chr8 (20-144)||(41366433-41366556)
chr8 (20-160)||(4733935-4734075)
chr8 (20-144)||(33352379-33352503)
chr8 (80-161)||(5689556-5689636)
chr8 (26-139)||(25690193-25690308)
chr8 (20-144)||(18105891-18106014)
chr8 (20-144)||(6599198-6599318)
chr8 (20-144)||(6674651-6674771)
chr8 (79-144)||(12702446-12702511)
chr8 (20-161)||(40321305-40321443)
chr8 (89-144)||(43036720-43036776)
chr8 (89-136)||(3303494-3303541)
chr8 (20-62)||(1292365-1292407)
chr8 (26-118)||(3439741-3439833)
chr8 (79-136)||(4743051-4743108)
chr8 (20-160)||(1345176-1345314)
chr8 (20-59)||(4743118-4743157)
[»] scaffold0491 (2 HSPs)
scaffold0491 (20-142)||(10976-11098)
scaffold0491 (20-142)||(8550-8672)
[»] chr6 (27 HSPs)
chr6 (20-160)||(2171326-2171466)
chr6 (20-160)||(16452127-16452267)
chr6 (24-160)||(5408869-5409005)
chr6 (24-160)||(5413194-5413330)
chr6 (20-160)||(30834333-30834473)
chr6 (26-161)||(3072551-3072690)
chr6 (20-133)||(9182857-9182970)
chr6 (26-140)||(6097266-6097380)
chr6 (20-145)||(28137225-28137349)
chr6 (24-141)||(31404493-31404610)
chr6 (71-140)||(412368-412438)
chr6 (26-139)||(27648091-27648205)
chr6 (20-144)||(26954106-26954229)
chr6 (26-139)||(16555109-16555223)
chr6 (26-139)||(16578332-16578446)
chr6 (26-139)||(16616934-16617048)
chr6 (26-139)||(16631665-16631779)
chr6 (26-139)||(16653352-16653466)
chr6 (24-160)||(5406002-5406135)
chr6 (24-160)||(5410327-5410460)
chr6 (20-133)||(33160177-33160289)
chr6 (80-144)||(3038742-3038806)
chr6 (20-118)||(16569249-16569347)
chr6 (20-62)||(33211086-33211128)
chr6 (100-161)||(22963507-22963568)
chr6 (100-161)||(23824825-23824886)
chr6 (89-125)||(9182824-9182860)
[»] chr3 (39 HSPs)
chr3 (20-160)||(5260122-5260262)
chr3 (20-142)||(23199954-23200075)
chr3 (20-160)||(5257943-5258083)
chr3 (26-142)||(7779818-7779934)
chr3 (20-160)||(9635923-9636063)
chr3 (20-144)||(7762495-7762619)
chr3 (26-160)||(801324-801463)
chr3 (20-160)||(9634621-9634760)
chr3 (20-143)||(40735611-40735734)
chr3 (20-160)||(9581512-9581652)
chr3 (20-160)||(19683687-19683827)
chr3 (20-162)||(7764694-7764836)
chr3 (20-136)||(37408688-37408804)
chr3 (20-142)||(23197761-23197876)
chr3 (22-145)||(40734728-40734851)
chr3 (20-144)||(29811097-29811222)
chr3 (20-144)||(29813290-29813415)
chr3 (20-144)||(22834822-22834945)
chr3 (20-144)||(51399043-51399167)
chr3 (24-142)||(45095396-45095514)
chr3 (20-136)||(761074-761189)
chr3 (20-144)||(5236272-5236396)
chr3 (20-141)||(29682586-29682706)
chr3 (26-136)||(54635362-54635475)
chr3 (26-139)||(6716738-6716854)
chr3 (80-144)||(9666285-9666349)
chr3 (20-136)||(23391736-23391851)
chr3 (80-136)||(29196213-29196269)
chr3 (89-144)||(39153179-39153235)
chr3 (20-144)||(44700299-44700422)
chr3 (28-139)||(45283227-45283340)
chr3 (89-144)||(16499312-16499367)
chr3 (20-120)||(21350850-21350946)
chr3 (89-136)||(37406987-37407034)
chr3 (79-144)||(27305534-27305597)
chr3 (89-142)||(2074900-2074952)
chr3 (91-144)||(31314740-31314793)
chr3 (91-136)||(23410155-23410200)
chr3 (89-118)||(32891388-32891417)
[»] scaffold0286 (1 HSPs)
scaffold0286 (22-160)||(11795-11935)
[»] chr4 (27 HSPs)
chr4 (20-160)||(48143277-48143417)
chr4 (20-136)||(13992114-13992230)
chr4 (20-160)||(5369881-5370021)
chr4 (20-144)||(56178451-56178575)
chr4 (20-163)||(31495096-31495244)
chr4 (20-143)||(34570230-34570353)
chr4 (20-144)||(37740854-37740979)
chr4 (20-144)||(47038231-47038354)
chr4 (25-144)||(52082478-52082597)
chr4 (20-144)||(54199723-54199847)
chr4 (78-160)||(29999628-29999710)
chr4 (31-144)||(52095177-52095290)
chr4 (20-144)||(48893458-48893581)
chr4 (20-134)||(9927284-9927398)
chr4 (20-144)||(5872047-5872168)
chr4 (20-144)||(26175451-26175575)
chr4 (20-144)||(46147210-46147334)
chr4 (20-144)||(52467172-52467297)
chr4 (80-144)||(45687002-45687066)
chr4 (35-161)||(36463195-36463319)
chr4 (20-69)||(5429908-5429957)
chr4 (89-144)||(12743743-12743799)
chr4 (20-160)||(29254723-29254861)
chr4 (20-136)||(31474376-31474491)
chr4 (89-144)||(12739368-12739424)
chr4 (80-118)||(4588240-4588278)
chr4 (92-144)||(5207666-5207717)
[»] chr7 (34 HSPs)
chr7 (20-142)||(39731600-39731723)
chr7 (20-136)||(4179002-4179118)
chr7 (20-136)||(48409036-48409152)
chr7 (20-160)||(25766757-25766896)
chr7 (24-160)||(29991286-29991422)
chr7 (20-160)||(35854145-35854285)
chr7 (23-144)||(23555273-23555395)
chr7 (20-144)||(25616084-25616208)
chr7 (20-144)||(27348046-27348170)
chr7 (20-144)||(48489660-48489784)
chr7 (20-144)||(18126875-18127000)
chr7 (20-144)||(43864473-43864598)
chr7 (20-144)||(495803-495926)
chr7 (27-142)||(24790240-24790355)
chr7 (20-144)||(41648829-41648952)
chr7 (20-136)||(47675960-47676075)
chr7 (20-160)||(48491805-48491944)
chr7 (20-161)||(26417545-26417686)
chr7 (20-136)||(4586390-4586506)
chr7 (20-136)||(41317262-41317377)
chr7 (20-160)||(43503947-43504090)
chr7 (20-144)||(19502408-19502532)
chr7 (26-139)||(20344134-20344250)
chr7 (20-144)||(31732783-31732908)
chr7 (20-136)||(47673768-47673883)
chr7 (20-161)||(1113882-1114022)
chr7 (20-144)||(14069648-14069772)
chr7 (20-144)||(14379676-14379800)
chr7 (40-144)||(8153587-8153690)
chr7 (91-144)||(38671040-38671093)
chr7 (80-144)||(36146227-36146291)
chr7 (20-136)||(31105224-31105335)
chr7 (20-58)||(31519120-31519158)
chr7 (89-118)||(23344263-23344292)
[»] scaffold0002 (1 HSPs)
scaffold0002 (20-160)||(434763-434903)
[»] scaffold1519 (1 HSPs)
scaffold1519 (20-160)||(1145-1285)
[»] scaffold0016 (1 HSPs)
scaffold0016 (20-142)||(114832-114955)
[»] scaffold0066 (1 HSPs)
scaffold0066 (20-133)||(20241-20354)
[»] scaffold0006 (1 HSPs)
scaffold0006 (89-144)||(148927-148982)
[»] scaffold1668 (1 HSPs)
scaffold1668 (92-136)||(1325-1369)


Alignment Details
Target: chr1 (Bit Score: 164; Significance: 2e-87; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 203 - 382
Target Start/End: Original strand, 49712450 - 49712629
Alignment:
Q  203 gtggaagtaaatttccccaagtagacaatgattgcaacatccaaccaatgaacataatcatacttattacttgcaccctttccatttgtaatgccattgc 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||| |||||||||||||    
T  49712450 gtggaagtaaatttccccaagtagacaatgattgcaacatccaaccactgaacataatcatacttattgtttgcaccctttccattagtaatgccattgc 49712549  T
Q  303 ttaatgttctagcttttcattttcacatcattagtattctcagccatctccaataccctccgtctagaaccaggatgaac 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49712550 ttaatgttctagcttttcattttcacatcattagtattctcagccatctccaataccctccgtctagaaccaggatgaac 49712629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 51765628 - 51765750
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||  ||||||||||||||||||||||||||||||||||     
T  51765628 ttcactttgtttcctagattagatctaggtgttgttattgttgattattgcttgcactcacttaattagtggttactactttcctttgctccacacatca 51765727  T
Q  120 tactttgtattggtgtggttttg 142  Q
    || || |||||||||||||||||    
T  51765728 tatttcgtattggtgtggttttg 51765750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 13316291 - 13316151
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||||| |||||  |||||||||| || ||||||||||||||||||||||||||      
T  13316291 ttcactttgattcctagattagatctaggtgctgttattgttgattattgcttgcattcactttgttattgattactactttcctttgctccacacatta 13316192  T
Q  120 tactttgtattggtgtggttttgagatcggaatacacaaca 160  Q
    || || ||||||||||| |||||||| |||||| |||||||    
T  13316191 tatttcgtattggtgtgattttgagaccggaattcacaaca 13316151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 421 - 543
Target Start/End: Original strand, 49655037 - 49655162
Alignment:
Q  421 tcccctaatttattcatacatcatccttttttattttcttg---ccacaaccactgtatgctctatagaaccaaaatttgaagcttgtgaagccaaaaca 517  Q
    |||| |||||||||||||||||| |||||||||| |||||    ||||||||||||||||||||||||||| |||||||| || ||||||||||||||||    
T  49655037 tcccttaatttattcatacatcacccttttttatcttcttcttaccacaaccactgtatgctctatagaacaaaaatttgtagattgtgaagccaaaaca 49655136  T
Q  518 tgtggcaaccaaagtataatctaccc 543  Q
    ||||||||||||||||||| ||||||    
T  49655137 tgtggcaaccaaagtataagctaccc 49655162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 8550723 - 8550599
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||| |||    ||||||| || ||||||||||||||||||||||||||||||     
T  8550723 ttcactttgattcctagattagatctaggtgttgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgctccacacatca 8550624  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || |||||||||||||| |||||||    
T  8550623 tagtttgtattggtgtgattttgag 8550599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 30 - 160
Target Start/End: Original strand, 20762907 - 20763037
Alignment:
Q  30 ttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatcttactttgtat 129  Q
    |||||| |||||||||||||| |||||||||||||||||| ||| |  ||||||| || |||||| ||||||||||||||||||||||| || |||||||    
T  20762907 ttcctagattagatctaggtgctgttattgttgattattgcttgaattcactttgatattggttaatactttcctttgctccacacatcatagtttgtat 20763006  T
Q  130 tggtgtggttttgagatcggaatacacaaca 160  Q
    ||||||| |||||||| |||||| |||||||    
T  20763007 tggtgtgattttgagaccggaattcacaaca 20763037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 49918579 - 49918703
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    |||| |||| |||||| ||||||| |||||| |||||||||||||||||| |||    ||||||| || ||||||||||||||||||||||||||||||     
T  49918579 ttcattttgattcctagattagatataggtgctgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgctccacacatca 49918678  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || |||||||||||||| |||||||    
T  49918679 tagtttgtattggtgtgattttgag 49918703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 3157094 - 3157205
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||||| |||    ||||||| || ||||||||||||||||||||||||||||||     
T  3157094 ttcactttgattcctagattagatctaggtgctgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgctccacacatca 3157193  T
Q  120 tactttgtattg 131  Q
    || |||||||||    
T  3157194 tagtttgtattg 3157205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 26 - 160
Target Start/End: Original strand, 9987439 - 9987579
Alignment:
Q  26 ttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttg-ttagtggttactactttcctttgctccacacatcttactt 124  Q
    |||||||||| |||||||||||||| |||| ||||||||||||| |||||| ||||||| || |||||||| ||| |||||||||||||||||| || ||    
T  9987439 ttgtttcctagattagatctaggtggtgtt-ttgttgattattgcttgcacacactttgattggtggttaccactctcctttgctccacacatcatattt 9987537  T
Q  125 t--gtattggtgtggt----tttgagatcggaatacacaaca 160  Q
    |  |||||||||||||    |||||||||||||| |||||||    
T  9987538 ttcgtattggtgtggttcgatttgagatcggaattcacaaca 9987579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 834108 - 833985
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||| | ||||||||| |||||||||||||||| |||||| |||     |||||| || ||||||||||||||||||||||||||||||     
T  834108 ttcactttgattcccagattagatcttggtgttgttattgttg-ttattgcttgtgtttactttgatattggttactactttcctttgctccacacatca 834010  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || |||||||||||||| |||||||    
T  834009 tagtttgtattggtgtgattttgag 833985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 24 - 144
Target Start/End: Original strand, 10925455 - 10925575
Alignment:
Q  24 ctttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatcttact 123  Q
    ||||| || ||| ||||||||||||||||||||||||||||||||| |||    ||||||| || || ||||||||||||||||||||||||| | || |    
T  10925455 ctttgattactagattagatctaggtgttgttattgttgattattgcttgtgttcactttgatattgattactactttcctttgctccacacaacatagt 10925554  T
Q  124 ttgtattggtgtggttttgag 144  Q
    |||||||| |||| |||||||    
T  10925555 ttgtattgttgtgattttgag 10925575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 44455389 - 44455513
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||||| |||    ||||||| || ||||||| ||||| |||| ||||||| |||     
T  44455389 ttcactttgattcctagattagatctaggtgctgttattgttgattattgtttgtgttcactttgatattggttaccacttttcttttctccacatatca 44455488  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || |||||||||||||| |||||||    
T  44455489 tagtttgtattggtgtgattttgag 44455513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 20622168 - 20622052
Alignment:
Q  26 ttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccac--tttgttag-tggttactactttcctttgctccacacatcttac 122  Q
    |||||||||| |||||||||||||| |||| ||||||||||||| |||||| |||  |||||| | |||||||||||||||||||||||||||||| |||    
T  20622168 ttgtttcctagattagatctaggtggtgtt-ttgttgattattgcttgcacacacactttgtttggtggttactactttcctttgctccacacatcatac 20622070  T
Q  123 tttgtattggtgtggttt 140  Q
    || |||  ||||||||||    
T  20622069 ttggtacaggtgtggttt 20622052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 37559805 - 37559679
Alignment:
Q  20 ttcactttgtttcctaaatt-agatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatc 118  Q
    ||||||||| |||||| ||| ||||||||||| |||||||||||||||||| |||    ||||||| || |||||||||||||||||||||||| |||||    
T  37559805 ttcactttgattcctagatttagatctaggtgctgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgctccagacatc 37559706  T
Q  119 ttactttgtattggtgtg-gttttgag 144  Q
     || ||| |||||||||| ||||||||    
T  37559705 atagtttatattggtgtgagttttgag 37559679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 26 - 160
Target Start/End: Original strand, 21054195 - 21054335
Alignment:
Q  26 ttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttag-tggttactactttcctttgctccacacatcttact- 123  Q
    |||||||||| |||||||||||||| |||| ||||||||||||| |||||| ||||| ||| | ||||||| ||| |||||||||||||||||| || |     
T  21054195 ttgtttcctagattagatctaggtggtgtt-ttgttgattattgcttgcacacacttagtttggtggttaccactctcctttgctccacacatcatattt 21054293  T
Q  124 -ttgtattggtgtggt----tttgagatcggaatacacaaca 160  Q
     |||||||||||||||    |||||||||||||| |||||||    
T  21054294 cttgtattggtgtggttcgatttgagatcggaattcacaaca 21054335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 23 - 144
Target Start/End: Original strand, 31659470 - 31659591
Alignment:
Q  23 actttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatcttac 122  Q
    |||||| |||||| |||||||| |||||||||||||||||||||||| |||    || |||| || ||||||||||||| |||| ||||||||||| ||     
T  31659470 actttgattcctagattagatcaaggtgttgttattgttgattattgcttgtgttcattttgatattggttactacttttcttttctccacacatcatat 31659569  T
Q  123 tttgtattggtgtggttttgag 144  Q
    ||| |||||||||| |||||||    
T  31659570 tttatattggtgtgattttgag 31659591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 40122139 - 40122016
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || |||||||||||||||||||||||||| ||| || ||| |||    ||||| | || ||||||||||||||||||||||||| ||||     
T  40122139 ttcactttgattactaaattagatctaggtgttgttattattg-ttgttgcttgtgttcacttagatattggttactactttcctttgctccacgcatca 40122041  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || |||||||||||||| |||||||    
T  40122040 tagtttgtattggtgtgattttgag 40122016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 40282614 - 40282731
Alignment:
Q  26 ttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccac--tttgtta--gtggttactactttcctttgctccacacatctta 121  Q
    |||||||||| |||||||||||||| |||| ||||||||||||| |||||| |||  ||||||   |||||||| ||| |||||||||||||||||| ||    
T  40282614 ttgtttcctagattagatctaggtggtgtt-ttgttgattattgcttgcacacacactttgttttggtggttaccactctcctttgctccacacatcata 40282712  T
Q  122 ctttgtattggtgtggttt 140  Q
     |||| |||||||||||||    
T  40282713 gtttgcattggtgtggttt 40282731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 13137919 - 13137795
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| |||||||||||||||||||||| ||| || ||| |||     ||||||  | ||||||||||||||||||||||||||||||     
T  13137919 ttcactttgattactagattagatctaggtgttgttattattg-ttgttgcttgtgtttactttgaaattggttactactttcctttgctccacacatca 13137821  T
Q  120 tactttgtattggtgtg-gttttgag 144  Q
    || |||||||||||||| ||||||||    
T  13137820 taatttgtattggtgtgagttttgag 13137795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 28223360 - 28223248
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| |||||||||||||||||||||| ||| || ||| |||    ||||||| || |||||||||||||| |||||||||||||||     
T  28223360 ttcactttgattactagattagatctaggtgttgttattattg-ttgttgcttgtgttcactttgatattggttactactttcgtttgctccacacatca 28223262  T
Q  120 tactttgtattggt 133  Q
    || |||||||||||    
T  28223261 tagtttgtattggt 28223248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 37503496 - 37503377
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||  |||||| ||||||||||||||||| ||||||||||||||| |||    ||||||| || |     |||||||||||| |||||||||||     
T  37503496 ttcactttaattcctagattagatctaggtgttgatattgttgattattgcttgtgttcactttgatatt-----ctactttcctttactccacacatca 37503402  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || |||||||||||||| |||||||    
T  37503401 tagtttgtattggtgtgattttgag 37503377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 50167118 - 50166995
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| |||||||||||||||||||||| ||| || ||  |||     |||||| || ||||||||||||||||||||||||||||||     
T  50167118 ttcactttgattactagattagatctaggtgttgttattattg-ttgtttcttgtgtttactttgatattggttactactttcctttgctccacacatca 50167020  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || ||||| |||||||| |||||||    
T  50167019 tagtttgttttggtgtgattttgag 50166995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 21 - 136
Target Start/End: Complemental strand, 196847 - 196733
Alignment:
Q  21 tcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatctt 120  Q
    |||||||| || ||| ||||||| |||||||||||||| ||| || ||| |||    ||||||| || ||||||||| |||||||||||||||||||| |    
T  196847 tcactttgattactagattagatgtaggtgttgttattattg-ttgttgcttgtgttcactttgatattggttactattttcctttgctccacacatcat 196749  T
Q  121 actttgtattggtgtg 136  Q
    | ||||||||||||||    
T  196748 aatttgtattggtgtg 196733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 485 - 543
Target Start/End: Original strand, 49712626 - 49712684
Alignment:
Q  485 gaaccaaaatttgaagcttgtgaagccaaaacatgtggcaaccaaagtataatctaccc 543  Q
    |||| |||||||| || ||||||||||||||||||||||||||||||||||| ||||||    
T  49712626 gaacaaaaatttgtagattgtgaagccaaaacatgtggcaaccaaagtataagctaccc 49712684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 50169153 - 50169032
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| ||||||| |||||||||||||| ||| || ||| |||    ||||||| || |||||||||||||| |||||| ||||||||     
T  50169153 ttcactttgattactagattagatataggtgttgttattattg-ttgttgtttgtgttcactttgatattggttactactttcatttgcttcacacatca 50169055  T
Q  120 tactttgtattggtgtggttttg 142  Q
    || |||||||||||||| |||||    
T  50169054 tagtttgtattggtgtgattttg 50169032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 45644237 - 45644173
Alignment:
Q  80 ctttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtggttttgag 144  Q
    ||||| || |||||||||||||||||||||||||||||| || |||||||| ||||| |||||||    
T  45644237 ctttgatattggttactactttcctttgctccacacatcatagtttgtatttgtgtgattttgag 45644173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 9036655 - 9036770
Alignment:
Q  26 ttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacc--cactttgttag-tggttactactttcctttgctccacacatcttac 122  Q
    |||||||||| |||||||||||||| |||| |||||| || ||| ||||||   ||||||||| | ||||||| ||| ||||| |||||||||||| | |    
T  9036655 ttgtttcctagattagatctaggtggtgtt-ttgttgtttgttgcttgcacaaacactttgtttggtggttaccactctccttagctccacacatcatcc 9036753  T
Q  123 tttgtattggtgtggtt 139  Q
    |||| ||||||||||||    
T  9036754 tttgcattggtgtggtt 9036770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 28220165 - 28220041
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| |||||||||||||||||||||| ||| || ||| |||    ||||||  || ||||||||| ||| ||||| ||||||||||     
T  28220165 ttcactttgattactagattagatctaggtgttgttattattg-ttgttgtttgtgttcactttaatattggttactaattttctttgttccacacatca 28220067  T
Q  120 tactttgtattggtgtg-gttttgag 144  Q
    || |||||||||||||| ||||||||    
T  28220066 tagtttgtattggtgtgagttttgag 28220041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 144
Target Start/End: Complemental strand, 28265494 - 28265374
Alignment:
Q  23 actttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatcttac 122  Q
    |||||| || ||| ||||||||||| |||||||||| ||| || ||| |||    ||||||| || ||| ||||| |||||||| ||||||||||| ||     
T  28265494 actttgattactagattagatctagatgttgttattattg-ttgttgcttgtgttcactttgatattggctactattttcctttactccacacatcatag 28265396  T
Q  123 tttgtattggtgtggttttgag 144  Q
    |||||||||||||| |||||||    
T  28265395 tttgtattggtgtgattttgag 28265374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 23555209 - 23555086
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    |||||| || ||||||||||||||||||||||||||||||||| || ||| |||     ||||||  | || |||||||||| ||||||||||||||||     
T  23555209 ttcactatgattcctaaattagatctaggtgttgttattgttg-ttgttgcttgtgtttactttgacattgattactacttttctttgctccacacatca 23555111  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    |  ||| |||||||| | |||||||    
T  23555110 ttgtttctattggtgcgattttgag 23555086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 3847062 - 3846936
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgat--tattgattgcacccactttgttagtggttactactttcctttgctccacacat 117  Q
    ||||||||| || ||| |||||||||||||||||||||| ||  |  | ||| |||    ||||||| || |||||||||||||||||| ||||||||||    
T  3847062 ttcactttgattactatattagatctaggtgttgttattattattgttgttgcttgtgttcactttgatattggttactactttcctttactccacacat 3846963  T
Q  118 cttactttgtattggtgtggttttgag 144  Q
    | || |||||||| || || |||||||    
T  3846962 catagtttgtattagtatgattttgag 3846936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 13659221 - 13659166
Alignment:
Q  89 tggttactactttcctttgctccacacatcttactttgtattggtgtggttttgag 144  Q
    |||||||||||||||||||||||||||||  || ||||||||| |||| |||||||    
T  13659221 tggttactactttcctttgctccacacattatagtttgtattgatgtgattttgag 13659166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 3189642 - 3189695
Alignment:
Q  89 tggttactactttcctttgctccacacatcttactttgtattggtgtggttttg 142  Q
    |||||||||||||||||||||||| ||||| || ||| |||||||||| |||||    
T  3189642 tggttactactttcctttgctccagacatcatagtttatattggtgtgattttg 3189695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 3198459 - 3198512
Alignment:
Q  89 tggttactactttcctttgctccacacatcttactttgtattggtgtggttttg 142  Q
    |||||||||||||||||||||||| ||||| || ||| |||||||||| |||||    
T  3198459 tggttactactttcctttgctccagacatcatagtttatattggtgtgattttg 3198512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 3207298 - 3207351
Alignment:
Q  89 tggttactactttcctttgctccacacatcttactttgtattggtgtggttttg 142  Q
    |||||||||||||||||||||||| ||||| || ||| |||||||||| |||||    
T  3207298 tggttactactttcctttgctccagacatcatagtttatattggtgtgattttg 3207351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 30476317 - 30476261
Alignment:
Q  89 tggttactactttcctttgctccacacatcttactttgtattggtgtg-gttttgag 144  Q
    |||||||||||||||||| ||||||||||  || |||||||||||||| ||||||||    
T  30476317 tggttactactttcctttactccacacattatagtttgtattggtgtgagttttgag 30476261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 196
Target Start/End: Original strand, 49712083 - 49712118
Alignment:
Q  161 tgtcaggaaacaatatagaaagtgaattttaaattt 196  Q
    ||||||||||||||||||| ||||||||||||||||    
T  49712083 tgtcaggaaacaatatagatagtgaattttaaattt 49712118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 119
Target Start/End: Original strand, 15820596 - 15820624
Alignment:
Q  91 gttactactttcctttgctccacacatct 119  Q
    |||||||||||||||||||||||||||||    
T  15820596 gttactactttcctttgctccacacatct 15820624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 129; Significance: 2e-66; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 32289797 - 32289937
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32289797 ttcactttgtttcctagattagatctaggtgttgttattgttgattattgcttgcacccactttgttagtggttactactttcctttgctccacacatct 32289896  T
Q  120 tactttgtattggtgtggttttgagatcggaatacacaaca 160  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  32289897 tactttgtattggtgtggttttgagatcggaattcacaaca 32289937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 4484267 - 4484127
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||     
T  4484267 ttcactttgtttcctagattagatctaggtgttgttattgttgattattgcttgcactcactttgttattggttactactttcctttgctccacacatca 4484168  T
Q  120 tactttgtattggtgtggttttgagatcggaatacacaacat 161  Q
    || || |||||||||| | ||||||| |||||| ||||||||    
T  4484167 tatttcgtattggtgt-gatttgagaccggaattcacaacat 4484127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 4503072 - 4502932
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||| |||||  |||||||||| |||||||||||||||||| ||||||||||      
T  4503072 ttcactttgtttcctagattagatctaggtgctgttattgttgattattgcttgcattcactttgttattggttactactttcctttactccacacatta 4502973  T
Q  120 tactttgtattggtgtggttttgagatcggaatacacaacat 161  Q
    || ||||||||||||| | ||||||| |||||| ||||||||    
T  4502972 tagtttgtattggtgt-gatttgagaccggaattcacaacat 4502932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 36205604 - 36205463
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||||| |||    |||||||||| ||||||||||||||||||||||||||||||     
T  36205604 ttcactttgattcctagattagatctaggtgctgttattgttgattattgcttgtgttcactttgttattggttactactttcctttgctccacacatca 36205505  T
Q  120 tactttgtattggtgtggttttgagatcggaatacacaacat 161  Q
    || |||||||| ||||| |||||||| |||||| ||||||||    
T  36205504 tagtttgtattagtgtgattttgagaccggaattcacaacat 36205463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 30833577 - 30833693
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||| |  ||| ||||||||||||||||||||||||||||||     
T  30833577 ttcactttgtttcctagattagatctaggtgttgttattgttgattattgcttgcactcacataattaatggttactactttcctttgctccacacatca 30833676  T
Q  120 tactttgtattggtgtg 136  Q
    || || |||||||||||    
T  30833677 tatttcgtattggtgtg 30833693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 25 - 141
Target Start/End: Complemental strand, 5723190 - 5723074
Alignment:
Q  25 tttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatcttactt 124  Q
    |||| |||||| ||||||||||||||||||||||||||||||||| |||  | ||||||| || ||||||||||||| |||||||||||||||| || ||    
T  5723190 tttgattcctagattagatctaggtgttgttattgttgattattgtttgtgctcactttgatattggttactactttactttgctccacacatcatagtt 5723091  T
Q  125 tgtattggtgtggtttt 141  Q
    |||||||||||| ||||    
T  5723090 tgtattggtgtgatttt 5723074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 36988014 - 36987890
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||| |||     ||||||  | ||||||||||||||||||||||||||||||     
T  36988014 ttcactttgattcctagattagatctaggtgttgttattgttgattattgcttgtgtttactttgaaattggttactactttcctttgctccacacatca 36987915  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || |||||||||||||| |||||||    
T  36987914 tagtttgtattggtgtgattttgag 36987890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 45099983 - 45100122
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||||| |||    ||||||| || ||||||||||||||||||||||||||||||     
T  45099983 ttcactttgattcctagattagatctaggtgctgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgctccacacatca 45100082  T
Q  120 tactttgtattggtgtggttttgagatcggaatacacaaca 160  Q
    || || |||||||||| | ||||||| |||||| |||||||    
T  45100083 taattcgtattggtgt-gatttgagaccggaattcacaaca 45100122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 17057308 - 17057184
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||  |||||| |||||||||||||| |||||||||||||||||| |||    ||||||| || |||||||||||||||||||||| |||||||     
T  17057308 ttcactttaattcctagattagatctaggtgctgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgctctacacatca 17057209  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || |||||||||||||| |||||||    
T  17057208 tattttgtattggtgtgattttgag 17057184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 17085291 - 17085167
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||  |||||| |||||||||||||| |||||||||||||||||| |||    ||||||| || |||||||||||||||||||||| |||||||     
T  17085291 ttcactttaattcctagattagatctaggtgctgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgctctacacatca 17085192  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || |||||||||||||| |||||||    
T  17085191 tattttgtattggtgtgattttgag 17085167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 723685 - 723562
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| |||||||||||||||||||||| ||| || |||||||    ||||||| || ||||||||||||||||||||||||||||||     
T  723685 ttcactttgattactagattagatctaggtgttgttattattg-ttgttgattgtgttcactttgatattggttactactttcctttgctccacacatca 723587  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || |||||||||||||| |||||||    
T  723586 tagtttgtattggtgtgattttgag 723562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 6594943 - 6594819
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| |||||||||||||| |||||||||||||||||  |||    ||||||| || ||||||||||||| ||||||||||||||||     
T  6594943 ttcactttgatttctagattagatctaggtgctgttattgttgattattacttgtgttcactttgatattggttactactttactttgctccacacatca 6594844  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || |||||||||||||| |||||||    
T  6594843 tagtttgtattggtgtgattttgag 6594819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 38312469 - 38312593
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||| ||| |||    ||||||| || ||||||||||||||||||||||||||||||     
T  38312469 ttcactttgattcctagattagatctaggtgctgttattgttgattgttgcttgtgttcactttgatattggttactactttcctttgctccacacatca 38312568  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    |  ||| |||||||||| |||||||    
T  38312569 ttgtttatattggtgtgattttgag 38312593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 14633766 - 14633643
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| |||||||||||||||||||||| ||| || ||| |||    ||||||| || ||||||||||||||||||||| ||||||||     
T  14633766 ttcactttgattactagattagatctaggtgttgttattattg-ttgttgcttgtgttcactttgatattggttactactttcctttgcttcacacatca 14633668  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || |||||||||||||| |||||||    
T  14633667 tagtttgtattggtgtgattttgag 14633643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 34139711 - 34139588
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| ||||||||||||| |||||||| ||| || ||| |||    ||||||| || ||||||||||||||||||||||||||||||     
T  34139711 ttcactttgattactagattagatctaggtcttgttattattg-ttgttgcttgtgttcactttgatattggttactactttcctttgctccacacatca 34139613  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || |||||||||||||| |||||||    
T  34139612 tagtttgtattggtgtgattttgag 34139588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 42362575 - 42362698
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| |||||||||||||||||||||| ||| || ||| |||    ||||||| |  ||||||||||||||||||||||||||||||     
T  42362575 ttcactttgattactagattagatctaggtgttgttattattg-ttgttgcttgagttcactttgattttggttactactttcctttgctccacacatca 42362673  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || |||||||||||||| |||||||    
T  42362674 tagtttgtattggtgtgattttgag 42362698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 29 - 140
Target Start/End: Original strand, 6266932 - 6267043
Alignment:
Q  29 tttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttag-tggttactactttcctttgctccacacatcttactttgt 127  Q
    ||||||| ||||||||||||||||||| ||||||||| ||| || ||| ||||||||| | ||||||| ||| |||||||||||||||||| || |||      
T  6266932 tttcctagattagatctaggtgttgtt-ttgttgatttttgcttacacacactttgtttggtggttaccactctcctttgctccacacatcatagtttac 6267030  T
Q  128 attggtgtggttt 140  Q
    |||||||||||||    
T  6267031 attggtgtggttt 6267043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 2838175 - 2838272
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatc 118  Q
    ||||||||| |||||| |||| ||||||||||||||||||||| || ||| |||     |||||| ||||||||||||||||||||| |||||||||||    
T  2838175 ttcactttgattcctagattatatctaggtgttgttattgttg-ttgttgtttgtgtttactttgatagtggttactactttcctttactccacacatc 2838272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 11067530 - 11067627
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatc 118  Q
    ||||||||| || ||| |||||||||||||||||||||| ||| || ||| |||    ||||||| || ||||||||||||||||||||||||||||||    
T  11067530 ttcactttgattactagattagatctaggtgttgttattattg-ttgttgcttgtgttcactttgatattggttactactttcctttgctccacacatc 11067627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 2334356 - 2334233
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || | | |||||||||||||||||||||| ||| || ||| |||     ||||||  | ||||||||||||||||||||| ||||||||     
T  2334356 ttcactttgattaccagattagatctaggtgttgttattattg-ttgttgcttgtgtttactttgaaattggttactactttcctttgcttcacacatca 2334258  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || |||||||||||||| |||||||    
T  2334257 tagtttgtattggtgtgattttgag 2334233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 24885815 - 24885938
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| |||||||||||||||||||||  ||| || ||  |||    ||||||| || ||||||||| ||||||||||| ||||||||     
T  24885815 ttcactttgattactagattagatctaggtgttgttatcattg-ttgtttcttgtgttcactttgatattggttactattttcctttgctacacacatca 24885913  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || |||||||||||||| |||||||    
T  24885914 tagtttgtattggtgtgattttgag 24885938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 33162333 - 33162269
Alignment:
Q  80 ctttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtggttttgag 144  Q
    ||||| || |||||||||||||||||||||||||||||| || ||||||||| |||| |||||||    
T  33162333 ctttgatattggttactactttcctttgctccacacatcatagtttgtattgatgtgattttgag 33162269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 80 - 160
Target Start/End: Original strand, 36773847 - 36773926
Alignment:
Q  80 ctttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtggttttgagatcggaatacacaaca 160  Q
    ||||| || |||||||||||||| ||||||||||||||| || |||||||||||||| |||||| ||| |||| |||||||    
T  36773847 ctttgatattggttactactttcatttgctccacacatcatagtttgtattggtgtgattttga-atccgaattcacaaca 36773926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 14202362 - 14202240
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| |||||||||||||||||||||| ||| || ||| ||||   ||||||| || || ||||||||||||||| ||||||| |||     
T  14202362 ttcactttgattactagattagatctaggtgttgttattattg-ttgttgcttgcgttcactttgatattgattactactttcctttactccacatatca 14202264  T
Q  120 tactttgtattggtgtggttttga 143  Q
    || ||||| ||||| || ||||||    
T  14202263 tagtttgtgttggtatgattttga 14202240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 11690787 - 11690841
Alignment:
Q  91 gttactactttcctttgctccacacatcttactttgtattggtgtg-gttttgag 144  Q
    |||||||||||||||||||||||||||| || |||||||||||||| ||||||||    
T  11690787 gttactactttcctttgctccacacatcatagtttgtattggtgtgagttttgag 11690841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 1345692 - 1345733
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgtt 61  Q
    ||||||||| |||||| |||||||||||||||||||||||||    
T  1345692 ttcactttgattcctagattagatctaggtgttgttattgtt 1345733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 117
Target Start/End: Complemental strand, 12123472 - 12123434
Alignment:
Q  79 actttgttagtggttactactttcctttgctccacacat 117  Q
    |||||| || |||||||||||||||||||||||||||||    
T  12123472 actttgatattggttactactttcctttgctccacacat 12123434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 29868169 - 29868213
Alignment:
Q  92 ttactactttcctttgctccacacatcttactttgtattggtgtg 136  Q
    |||||||||| |||||||||||||||| || ||||||||| ||||    
T  29868169 ttactacttttctttgctccacacatcatagtttgtattgctgtg 29868213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 26178115 - 26178255
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||||||||||||||  |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26178115 ttcactttgattcctagattagatctaggtgttgttatcattgattattgcttgcacacactttgttagtggttactactttcctttgctccacacatct 26178214  T
Q  120 tactttgtattggtgtggttttgagatcggaatacacaaca 160  Q
    ||||| ||||||||||||||||||||||||||| |||||||    
T  26178215 tacttcgtattggtgtggttttgagatcggaattcacaaca 26178255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 16409708 - 16409830
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  16409708 ttcactttgtttcctagattagatctaggtgttgttattgttgattattgcttgcacccactttgttagtggttactactttcctttgctccacacatca 16409807  T
Q  120 tactttgtattggtgtggttttg 142  Q
    ||||||||||||||||| |||||    
T  16409808 tactttgtattggtgtgattttg 16409830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 29 - 160
Target Start/End: Complemental strand, 18441571 - 18441441
Alignment:
Q  29 tttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatcttactttgta 128  Q
    ||||||| |||||||||||||| |||| ||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  18441571 tttcctagattagatctaggtgctgtt-ttgttgattattgcttgcacacactttgttggtggttactactttcctttgctccacacatcttactttgta 18441473  T
Q  129 ttggtgtggttttgagatcggaatacacaaca 160  Q
    |||||||||||||||||||||||| |||||||    
T  18441472 ttggtgtggttttgagatcggaattcacaaca 18441441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 30182817 - 30182957
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||  |||||||||| ||||||||||||||||||||||||||||||     
T  30182817 ttcactttgtttcctagattagatctaggtgttgttattgttgattattgtttgcattcactttgttattggttactactttcctttgctccacacatca 30182916  T
Q  120 tactttgtattggtgtggttttgagatcggaatacacaaca 160  Q
    || ||||| |||||||| |||||||| |||||| |||||||    
T  30182917 tagtttgttttggtgtgattttgagaccggaattcacaaca 30182957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 29 - 160
Target Start/End: Complemental strand, 9789151 - 9789021
Alignment:
Q  29 tttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatcttactttgta 128  Q
    ||||||| |||||||||||||| |||| ||||||||| ||| |||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  9789151 tttcctagattagatctaggtgctgtt-ttgttgatttttgcttgcacacactttgttggtggttactactttcctttgctccacacatcatactttgta 9789053  T
Q  129 ttggtgtggttttgagatcggaatacacaaca 160  Q
    |||||||||||||||||||||||| |||||||    
T  9789052 ttggtgtggttttgagatcggaattcacaaca 9789021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 20 - 152
Target Start/End: Original strand, 26170995 - 26171127
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    |||| |||| |||||| |||||||||||||||||||||  | |||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  26170995 ttcattttgattcctagattagatctaggtgttgttatcatcgattattgcttgcacacactttgttagtgcttactactttcctttgctccacacatct 26171094  T
Q  120 tactttgtattggtgtggttttgagatcggaat 152  Q
    ||||| ||||||||||||||||||||| |||||    
T  26171095 tacttcgtattggtgtggttttgagattggaat 26171127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 36073982 - 36073861
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||||| |||||  |||||||||| |||||| |||||||||||||||||||||||     
T  36073982 ttcactttgattcctagattagatctaggtgctgttattgttgattattgcttgcattcactttgttattggttattactttcctttgctccacacatca 36073883  T
Q  120 tactttgtattggtgtggtttt 141  Q
    || |||||||||||||||||||    
T  36073882 tagtttgtattggtgtggtttt 36073861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 13343289 - 13343405
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||  |||||||||| ||||||||||||||||||||||||||||||     
T  13343289 ttcactttgattcctagattagatctaggtgttgttattgttgattattgcttgcattcactttgttattggttactactttcctttgctccacacatca 13343388  T
Q  120 tactttgtattggtgtg 136  Q
    || || ||||| |||||    
T  13343389 tagttcgtattagtgtg 13343405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 30682862 - 30682737
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||| |||    ||||||| || ||||||||||||||||||||||||||||||     
T  30682862 ttcactttgattcctagattagatctaggtgttgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgctccacacatca 30682763  T
Q  120 tactttgtattggtgtg-gttttgag 144  Q
    || |||||||||||||| ||||||||    
T  30682762 tagtttgtattggtgtgagttttgag 30682737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 39468488 - 39468373
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| |||||||||||||| |||||||||||||||||| |||    ||||||| || ||||||||||||||||||||||||||||||     
T  39468488 ttcactttgatttctagattagatctaggtgctgttattgttgattattgtttgtgttcactttgatattggttactactttcctttgctccacacatca 39468389  T
Q  120 tactttgtattggtgt 135  Q
    || |||||||||||||    
T  39468388 tagtttgtattggtgt 39468373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 25412993 - 25413130
Alignment:
Q  24 ctttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatcttact 123  Q
    ||||| |||||| ||||||| |||||| |||||||||||||||||| |||  | ||||| | || || |||||| |||||||||||||||||||| || |    
T  25412993 ctttgattcctagattagatataggtgctgttattgttgattattgcttgtgctcacttggatattgattactaatttcctttgctccacacatcatagt 25413092  T
Q  124 ttgtattggtgtggttttgagatcggaatacacaacat 161  Q
    | ||||||||||| |||||| | |||||| ||||||||    
T  25413093 tcgtattggtgtgattttgaaaccggaattcacaacat 25413130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 42428369 - 42428245
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| |||||||||||||||||||||| || ||| ||| |||    ||||||| || ||||||||||||||||||||||||||||||     
T  42428369 ttcactttgattactagattagatctaggtgttgttattatt-attgttgcttgtgttcactttgatattggttactactttcctttgctccacacatca 42428271  T
Q  120 tactttgtattggtgtg-gttttgag 144  Q
    || |||||||||||||| ||||||||    
T  42428270 tagtttgtattggtgtgagttttgag 42428245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 16649773 - 16649634
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| |||||||||||||||||||||| ||| | | |  |||    ||||||| | |||||||||||||||||||||||||||||||     
T  16649773 ttcactttgattactagattagatctaggtgttgttattattgct-actacttgtgttcactttgattgtggttactactttcctttgctccacacatca 16649675  T
Q  120 tactttgtattggtgtggttttgagatcggaatacacaacat 161  Q
    || ||||||||||| || ||||||| || |||| ||||||||    
T  16649674 tagtttgtattggtatgattttgagttc-gaattcacaacat 16649634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 42426174 - 42426050
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| |||||||||||||||||||||| |||||  ||| |||    ||||||| || |||||||||||||| |||||||||||||||     
T  42426174 ttcactttgattactagattagatctaggtgttgttattattgatg-ttgcttgtgttcactttgatattggttactactttcttttgctccacacatca 42426076  T
Q  120 tactttgtattggtgtg-gttttgag 144  Q
    || |||||||| ||||| ||||||||    
T  42426075 tagtttgtatttgtgtgagttttgag 42426050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 5887373 - 5887250
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    |||| |||| || ||| ||||||| |||||||||||||| ||| || ||| |||    ||||||| || |||||||||||||||||||||||||| |||     
T  5887373 ttcattttgattactagattagatttaggtgttgttattattg-ttgttgcttgtgttcactttgatattggttactactttcctttgctccacatatca 5887275  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || |||||||||||||| |||||||    
T  5887274 tagtttgtattggtgtgattttgag 5887250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 13488430 - 13488545
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| |||||||||||||||||||||| ||| | ||||||||    |||||||  | |||||| ||||||||||| |||||||||||     
T  13488430 ttcactttgattactagattagatctaggtgttgttattattgct-attgattgtgttcactttgaaattggttattactttcctttactccacacatca 13488528  T
Q  120 tactttgtattggtgtg 136  Q
    || ||||||||||||||    
T  13488529 tattttgtattggtgtg 13488545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 160
Target Start/End: Original strand, 29720601 - 29720743
Alignment:
Q  26 ttgtttcctaaattagatctaggtgttgttattgttgattattgattg--cacccactttg-ttagtggttactactttcctttgctccacacatcttac 122  Q
    |||||||||| |||||||||||||| |||| ||||||||||||| |||  ||| ||||||| || |||||||| ||| |||||||||||||||| | ||     
T  29720601 ttgtttcctagattagatctaggtggtgtt-ttgttgattattgcttgtacacacactttgtttggtggttaccactctcctttgctccacacaacatat 29720699  T
Q  123 t--ttgtattggtgtggtt----ttgagatcggaatacacaaca 160  Q
    |  ||||||||||||||||    ||||||||||||| |||||||    
T  29720700 ttcttgtattggtgtggttcgacttgagatcggaattcacaaca 29720743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 33831908 - 33832031
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| ||||||| |||||| || |||||||| |||||| |||    ||||||| |  ||||||||||||||||||||||||||||||     
T  33831908 ttcactttgattcctagattagatttaggtgctgctattgttg-ttattgcttgtgttcactttgattttggttactactttcctttgctccacacatca 33832006  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || |||||||| ||||  |||||||    
T  33832007 tagtttgtatttgtgtaattttgag 33832031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 8565889 - 8565764
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgat--tattgattgcacccactttgttagtggttactactttcctttgctccacacat 117  Q
    ||||||||| || ||| |||||||||||||||||||||| ||  |  | ||| |||    |||||||||| |||||||||||||||||||||||||||||    
T  8565889 ttcactttgattactagattagatctaggtgttgttattattattgttgttgcttgtgttcactttgttattggttactactttcctttgctccacacat 8565790  T
Q  118 cttactttgtattggtgtggttttga 143  Q
    | || ||| |||| ||||| ||||||    
T  8565789 catagtttatattagtgtgattttga 8565764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 161
Target Start/End: Original strand, 29722761 - 29722904
Alignment:
Q  26 ttgtttcctaaattagatctaggtgttgttattgttgattattgattg--cacccactttg-ttagtggttactactttcctttgctccacacatcttac 122  Q
    |||||||||| |||||||||||||| |||| ||||||||||||| |||  ||| ||||||| || |||||||| ||| | |||||||||||||| | ||     
T  29722761 ttgtttcctagattagatctaggtggtgtt-ttgttgattattgcttgtacacacactttgtttggtggttaccactctactttgctccacacaccatat 29722859  T
Q  123 t--ttgtattggtgtggtt----ttgagatcggaatacacaacat 161  Q
    |  ||||||||||||||||    ||||||||||||| ||||||||    
T  29722860 ttcttgtattggtgtggttcgacttgagatcggaattcacaacat 29722904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 13239981 - 13240104
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| |||||||||||||||||||||||||| || ||| |||     |||||   | |||||||||||||||||| |||||||||||     
T  13239981 ttcactttgattactagattagatctaggtgttgttattgttg-ttgttgcttgtgtttactttaaaattggttactactttcctttactccacacatca 13240079  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || |||||||| ||||| |||||||    
T  13240080 tagtttgtattagtgtgattttgag 13240104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 28750526 - 28750470
Alignment:
Q  89 tggttactactttcctttgctccacacatcttactttgtattggtgtg-gttttgag 144  Q
    |||||||||||||||||||||||||||||| || |||||||||||||| ||||||||    
T  28750526 tggttactactttcctttgctccacacatcataatttgtattggtgtgagttttgag 28750470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 42927122 - 42927221
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||||||||||||||||||| || ||| |||     |||||| || | ||| |||||||||||||||||||||||||    
T  42927122 ttcactttgattcctagattagatctaggtgttgttattgttg-ttgttgcttgtgtttactttgatattagttgctactttcctttgctccacacatct 42927220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 139
Target Start/End: Complemental strand, 22536221 - 22536108
Alignment:
Q  26 ttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttg--ttagtggttactactttcctttgctccacacatcttact 123  Q
    |||||||||| |||||||||||||||| ||  |||||||| ||| |||||  |||||||  || ||||||||  || ||| | |||||||||||| | ||    
T  22536221 ttgtttcctagattagatctaggtgttttt--tgttgattgttgcttgcatacactttgctttggtggttaccgctctccgtcgctccacacatcattct 22536124  T
Q  124 ttgtattggtgtggtt 139  Q
    ||||||||||||||||    
T  22536123 ttgtattggtgtggtt 22536108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 31183273 - 31183326
Alignment:
Q  91 gttactactttcctttgctccacacatcttactttgtattggtgtggttttgag 144  Q
    |||||||||||||||||||||||||||| |  |||||||||||||| |||||||    
T  31183273 gttactactttcctttgctccacacatcatggtttgtattggtgtgattttgag 31183326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 144
Target Start/End: Original strand, 534056 - 534112
Alignment:
Q  89 tggttactactttcctttgctccacacatcttactttgtattggtgtg-gttttgag 144  Q
    |||||||||||||||||||||||||||||| || ||| |||||||||| ||||||||    
T  534056 tggttactactttcctttgctccacacatcatagtttctattggtgtgagttttgag 534112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 3075629 - 3075573
Alignment:
Q  80 ctttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtg 136  Q
    ||||| || |||||| ||||||||||||||||||||||| || ||||||||||||||    
T  3075629 ctttgatattggttattactttcctttgctccacacatcatagtttgtattggtgtg 3075573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 538250 - 538374
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| ||||||||||| |||||||||| ||| || ||| |||     ||||||  | |||||| |||||||||||||||||||||||     
T  538250 ttcactttgattactagattagatctagatgttgttattattg-ttgttgcttgtgtttactttgaaattggttattactttcctttgctccacacatca 538348  T
Q  120 tactttgtattggtgtg-gttttgag 144  Q
    || ||| |||||||||| ||||||||    
T  538349 tagtttatattggtgtgagttttgag 538374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 19806660 - 19806705
Alignment:
Q  89 tggttactactttcctttgctccacacatcttactttgtattggtg 134  Q
    |||||||||||||||||||| ||||||||| || ||||||||||||    
T  19806660 tggttactactttcctttgccccacacatcatagtttgtattggtg 19806705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 26 - 139
Target Start/End: Complemental strand, 29751090 - 29750973
Alignment:
Q  26 ttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccac---tttgttagtggttactactttcctttgctccacacatcttac 122  Q
    |||||| ||| |||| ||||||||| |||| ||||||||||||| |||||| |||   ||  || |||||||| ||| |||||||||||||||||| ||     
T  29751090 ttgttttctagattatatctaggtggtgtt-ttgttgattattgcttgcacacacacattgtttggtggttaccactctcctttgctccacacatcatat 29750992  T
Q  123 t--ttgtattggtgtggtt 139  Q
    |  ||||||||||||||||    
T  29750991 ttcttgtattggtgtggtt 29750973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 32637123 - 32637168
Alignment:
Q  91 gttactactttcctttgctccacacatcttactttgtattggtgtg 136  Q
    |||||||||||||||| ||||||||||| || ||||||||||||||    
T  32637123 gttactactttcctttactccacacatcatagtttgtattggtgtg 32637168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 32637053 - 32637097
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgat 64  Q
    ||||||||| || ||| |||||||||||||||||||||| |||||    
T  32637053 ttcactttgattactagattagatctaggtgttgttattattgat 32637097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 6e-54; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 26 - 160
Target Start/End: Original strand, 2627973 - 2628108
Alignment:
Q  26 ttgtttcctaaattagatctaggtgttgttattgttgattatt-gattgcacccactttgttagtggttactactttcctttgctccacacatcttactt 124  Q
    |||||||||| ||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2627973 ttgtttcctagattagatctaggtgttgttattgttgattttttgcttgcacccactttgttagtggttactactttcctttgctccacacatcttactt 2628072  T
Q  125 tgtattggtgtggttttgagatcggaatacacaaca 160  Q
    |||||||||||||||| ||||||||||| |||||||    
T  2628073 tgtattggtgtggtttcgagatcggaattcacaaca 2628108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 19945298 - 19945158
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||| | |||||| |||||||||||||| |||||||||||||||||| |||||  |||||||||| ||||||||||||||||||||||||||||||     
T  19945298 ttcacttcgattcctagattagatctaggtgctgttattgttgattattgcttgcattcactttgttattggttactactttcctttgctccacacatca 19945199  T
Q  120 tactttgtattggtgtggttttgagatcggaatacacaaca 160  Q
     | |||||||||||||| |||||||| |||||| |||||||    
T  19945198 aagtttgtattggtgtgattttgagaccggaattcacaaca 19945158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 31218486 - 31218625
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||| |||||  |||||||||| ||||| ||||||||||||||||||||||||     
T  31218486 ttcactttgtttcctagattagatctaggtgctgttattgttgattattgcttgcattcactttgttattggttgctactttcctttgctccacacatca 31218585  T
Q  120 tactttgtattggtgtggttttgagatcggaatacacaaca 160  Q
    || ||| ||||||||| | ||||||| |||||| |||||||    
T  31218586 tagtttatattggtgt-gatttgagaccggaattcacaaca 31218625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 30143569 - 30143709
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||| |||    ||||||| || ||||||||||||||||||||||||||||||     
T  30143569 ttcactttgattcctagattagatctaggtgttgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgctccacacatca 30143668  T
Q  120 tactttgtattggtgtggttttgagatcggaatacacaacat 161  Q
    || |||||||||||||| ||||||| || |||| ||||||||    
T  30143669 tagtttgtattggtgtgattttgag-tctgaattcacaacat 30143709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 17982882 - 17983021
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||||| |||    |||||||||| |||||||||| |||||||||||||||||||     
T  17982882 ttcactttgattcctagattagatctaggtgctgttattgttgattattgcttgtgttcactttgttattggttactacgttcctttgctccacacatca 17982981  T
Q  120 tactttgtattggtgtggttttgagatcggaatacacaaca 160  Q
    || ||||||||||||| | |||||||||||||| |||||||    
T  17982982 tagtttgtattggtgt-gatttgagatcggaattcacaaca 17983021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 44304084 - 44304224
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| ||||||||||||||||||||||||||||||||| |||  | ||||||  || ||||||||||||||||||||||||||||||     
T  44304084 ttcactttgatttctagattagatctaggtgttgttattgttgattattgcttgtgctcactttaatattggttactactttcctttgctccacacatca 44304183  T
Q  120 tactttgtattggtgtggttttgagatcggaatacacaaca 160  Q
    || | |||||||||||| |||||||| |||||| |||||||    
T  44304184 tagtatgtattggtgtgattttgagaacggaattcacaaca 44304224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 23 - 160
Target Start/End: Complemental strand, 1746155 - 1746018
Alignment:
Q  23 actttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatcttac 122  Q
    |||||| |||||| |||||||||||||| |||||||||||||||||| |||    |||||||||| |||||||||||||||||| ||||||||||| ||     
T  1746155 actttgattcctagattagatctaggtgctgttattgttgattattgcttgtgttcactttgttattggttactactttcctttactccacacatcatag 1746056  T
Q  123 tttgtattggtgtggttttgagatcggaatacacaaca 160  Q
    || ||||||||||| |||||||| || ||| |||||||    
T  1746055 ttcgtattggtgtgattttgagaccgaaattcacaaca 1746018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 24 - 141
Target Start/End: Complemental strand, 34254266 - 34254149
Alignment:
Q  24 ctttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatcttact 123  Q
    ||||| |||||| |||||||||||||| |||||||||||||||||| |||  | ||||||| || |||||||||||||||||||||||||||||| || |    
T  34254266 ctttgattcctagattagatctaggtgctgttattgttgattattgcttgtgctcactttgatattggttactactttcctttgctccacacatcatagt 34254167  T
Q  124 ttgtattggtgtggtttt 141  Q
    ||||||||||||| ||||    
T  34254166 ttgtattggtgtgttttt 34254149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 15213015 - 15213157
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||| ||||| |||||||||||||||||| |||    ||||||| || ||||||||||||||||||||||||||||||     
T  15213015 ttcactttgattcctagattagatcaaggtgctgttattgttgattattgtttgtgttcactttgatattggttactactttcctttgctccacacatca 15213114  T
Q  120 tactttgtattggtgtg-gttttgagatcggaatacacaacatg 162  Q
    || |||||||||||||| |||||||| || |||| |||||||||    
T  15213115 tagtttgtattggtgtgagttttgag-tccgaattcacaacatg 15213157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 42498424 - 42498546
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| ||||||||||||||||||||||||| ||||||| |||    ||||||| || ||||| ||||||||||||||||||||||||     
T  42498424 ttcactttgattcctagattagatctaggtgttgttattgttaattattgcttgtgttcactttgatattggttgctactttcctttgctccacacatca 42498523  T
Q  120 tactttgtattggtgtggttttg 142  Q
    || |||||||||||||| |||||    
T  42498524 tattttgtattggtgtgattttg 42498546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 27811507 - 27811631
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatc- 118  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| |||    ||||||| || |||||||||||||||||| |||||||||||     
T  27811507 ttcactttgattcctaaattagatctaggtgttgttattgttgattattgcttgtgttcactttgatattggttactactttcctttcctccacacatca 27811606  T
Q  119 -ttactttgtattggtgtggttttg 142  Q
      || |||||||||||||| |||||    
T  27811607 tatagtttgtattggtgtgattttg 27811631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 24 - 141
Target Start/End: Complemental strand, 34256442 - 34256325
Alignment:
Q  24 ctttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatcttact 123  Q
    ||||| |||||| |||||||||||||| |||||||||||||||||| |||  | ||||||  || |||||||||||||||||||||||||||||| || |    
T  34256442 ctttgattcctagattagatctaggtgctgttattgttgattattgcttgtgctcactttaatattggttactactttcctttgctccacacatcatagt 34256343  T
Q  124 ttgtattggtgtggtttt 141  Q
    ||||||||||||| ||||    
T  34256342 ttgtattggtgtgttttt 34256325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 4731887 - 4732011
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||||| |||    ||||||| ||  |||||||||||||||||||||||||||||     
T  4731887 ttcactttgattcctagattagatctaggtgctgttattgttgattattgtttgtgttcactttgatatcggttactactttcctttgctccacacatca 4731986  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    |  |||||||||||||| |||||||    
T  4731987 ttgtttgtattggtgtgattttgag 4732011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 41366556 - 41366433
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||||||||||||||||||| |||||| |||     |||||| || ||||||||||||||||||||||||||||||     
T  41366556 ttcactttgattcctatattagatctaggtgttgttattgttg-ttattgcttgtgtttactttgatattggttactactttcctttgctccacacatca 41366458  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || |||||||||||||| |||||||    
T  41366457 tagtttgtattggtgtgattttgag 41366433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 4733935 - 4734075
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatc- 118  Q
    |||| ||||||||||| ||| ||||||||||||||||||||||||||||| |||    || |||| || ||||||||||||||||||||||||||||||     
T  4733935 ttcattttgtttcctacatttgatctaggtgttgttattgttgattattgcttgtgttcattttgatattggttactactttcctttgctccacacatca 4734034  T
Q  119 ttactttgtattggtgtggttttgagatcggaatacacaaca 160  Q
    ||  |||||||||||||  |||||| ||| |||| |||||||    
T  4734035 ttggtttgtattggtgtaattttga-atccgaattcacaaca 4734075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 33352379 - 33352503
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| ||||||| ||||||||||||||||||||||||| |||    ||||||| || |||||| ||||||||||||||||||| |||     
T  33352379 ttcactttgatttctagattagatttaggtgttgttattgttgattattgcttgtgttcactttgatattggttattactttcctttgctccacatatca 33352478  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || ||| |||||||||| |||||||    
T  33352479 taatttatattggtgtgattttgag 33352503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 5689556 - 5689636
Alignment:
Q  80 ctttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtggttttgagatcggaatacacaacat 161  Q
    ||||| || |||||||||||||||||||||||||||||| || |||||||||||||| ||||||| ||||||| ||||||||    
T  5689556 ctttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattttgag-tcggaattcacaacat 5689636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 25690193 - 25690308
Alignment:
Q  26 ttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccac--tttgttag-tggttactactttcctttgctccacacatcttac 122  Q
    |||||||||| |||||||||||||| |||| ||||||||| ||| |||||| |||  |||||| | ||||||| ||| |||||||||||||||||| | |    
T  25690193 ttgtttcctagattagatctaggtggtgtt-ttgttgattcttgcttgcacacacactttgtttggtggttaccactctcctttgctccacacatcattc 25690291  T
Q  123 tttgtattggtgtggtt 139  Q
    |||||||||||||||||    
T  25690292 tttgtattggtgtggtt 25690308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 18106014 - 18105891
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||||||| ||||||||||| |||||| |||     |||||  || |||||||||||||||||||||| |||||||     
T  18106014 ttcactttgattcctagattagatctaggtgatgttattgttg-ttattgcttgtgtttactttaatattggttactactttcctttgctctacacatca 18105916  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || |||||||| ||||| |||||||    
T  18105915 tagtttgtattagtgtgattttgag 18105891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 6599198 - 6599318
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| |||||||||||||||||||||| |||    ||| |||    ||||||| || |||||||||||||||||||||| |||||||     
T  6599198 ttcactttgattactagattagatctaggtgttgttattattg----ttgtttgtgttcactttgatattggttactactttcctttgctctacacatca 6599293  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || |||||||||||||| |||||||    
T  6599294 tagtttgtattggtgtgattttgag 6599318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 6674651 - 6674771
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| |||||||||||||||||||||| |||    ||| |||    ||||||| || |||||||||||||||||||||| |||||||     
T  6674651 ttcactttgattactagattagatctaggtgttgttattattg----ttgtttgtgttcactttgatattggttactactttcctttgctctacacatca 6674746  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || |||||||||||||| |||||||    
T  6674747 tagtttgtattggtgtgattttgag 6674771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 12702511 - 12702446
Alignment:
Q  79 actttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtggttttgag 144  Q
    |||||| || |||||||||||||||||||||||||||||| || ||||||||| |||| |||||||    
T  12702511 actttgatattggttactactttcctttgctccacacatcatagtttgtattgatgtgattttgag 12702446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 40321305 - 40321443
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| |||||||||||||||||||||| ||| || ||| |||     |||||| || || || |||||||||||||||||||| |||     
T  40321305 ttcactttgattactagattagatctaggtgttgttattattg-ttgttgcttgtgtttactttgatattgattgctactttcctttgctccacatatca 40321403  T
Q  120 tactttgtattggtgtggttttgagatcggaatacacaacat 161  Q
    || |||||||| ||||| ||||||| ||||||| ||||||||    
T  40321404 tagtttgtatt-gtgtgattttgag-tcggaattcacaacat 40321443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 144
Target Start/End: Original strand, 43036720 - 43036776
Alignment:
Q  89 tggttactactttcctttgctccacacatcttactttgtattggtgtg-gttttgag 144  Q
    |||||||||||||||||||||||||||||| |  |||||||||||||| ||||||||    
T  43036720 tggttactactttcctttgctccacacatcattttttgtattggtgtgagttttgag 43036776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 3303541 - 3303494
Alignment:
Q  89 tggttactactttcctttgctccacacatcttactttgtattggtgtg 136  Q
    ||||||| |||||||||||||||||||||| || ||||||||||||||    
T  3303541 tggttaccactttcctttgctccacacatcatagtttgtattggtgtg 3303494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 1292407 - 1292365
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttg 62  Q
    ||||||||| |||||| ||||||||||||||||||||||||||    
T  1292407 ttcactttgattcctagattagatctaggtgttgttattgttg 1292365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 3439741 - 3439833
Alignment:
Q  26 ttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttg-ttagtggttactactttcctttgctccacacatc 118  Q
    |||||||||| |||||||||||||| |||| ||||||||| ||| |||||| ||||||| || ||||||||  || ||| | ||||||||||||    
T  3439741 ttgtttcctagattagatctaggtggtgtt-ttgttgattgttgcttgcacacactttgtttggtggttaccgctctccgtcgctccacacatc 3439833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 79 - 136
Target Start/End: Complemental strand, 4743108 - 4743051
Alignment:
Q  79 actttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtg 136  Q
    |||||| || ||||||| |||||||||||||||||||||  || ||||||||||||||    
T  4743108 actttggtattggttaccactttcctttgctccacacattatagtttgtattggtgtg 4743051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 1345314 - 1345176
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| |||||||||||||||| ||||| ||| || ||| |||     |||||| || |||||||||||||||||||||||||| ||      
T  1345314 ttcactttgattactagattagatctaggtgttattattattg-ttgttgtttgtgtttactttgatattggttactactttcctttgctccacagatta 1345216  T
Q  120 tactttgtattggtgtggttttgagatcggaatacacaaca 160  Q
    |  |||||||| ||||| |||||| ||| |||| |||||||    
T  1345215 ttgtttgtatttgtgtgattttga-atccgaattcacaaca 1345176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 4743157 - 4743118
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattg 59  Q
    ||||||||| |||||| |||||||||||||||||||||||    
T  4743157 ttcactttgattcctagattagatctaggtgttgttattg 4743118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 11098 - 10976
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| || | |||||||||||||||||||||||||| |||     
T  11098 ttcactttgtttcctagattagatctaggtgttgttattgttgattattgcttgcacccacttagtcattggttactactttcctttgctccacatatca 10999  T
Q  120 tactttgtattggtgtggttttg 142  Q
    |||||||||||||||||||||||    
T  10998 tactttgtattggtgtggttttg 10976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 8672 - 8550
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| || | |||||||||||||||||||||||||  |||     
T  8672 ttcactttgtttcctagattagatctaggtgttgttattgttgattattgcttgcacccacttagtcattggttactactttcctttgctccacgtatca 8573  T
Q  120 tactttgtattggtgtggttttg 142  Q
    |||||||||||||||||||||||    
T  8572 tactttgtattggtgtggttttg 8550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 5e-45; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 2171466 - 2171326
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||     
T  2171466 ttcactttgattcctagattagatctaggtgctgttattgttgattattgcttgcacacactttgttagtggttactactttcctttgctccacacatca 2171367  T
Q  120 tactttgtattggtgtggttttgagatcggaatacacaaca 160  Q
    || || |||||||||||  ||||||| |||||| |||||||    
T  2171366 tagttcgtattggtgtgactttgagaccggaattcacaaca 2171326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 16452267 - 16452127
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||||| ||| |  |||||||||| |||||||||||||||||| |||||||||||     
T  16452267 ttcactttgattcctagattagatctaggtgatgttattgttgattattgcttgtattcactttgttattggttactactttcctttactccacacatca 16452168  T
Q  120 tactttgtattggtgtggttttgagatcggaatacacaaca 160  Q
    || || ||||||||||| ||||||||||||||| |||||||    
T  16452167 tagttcgtattggtgtgattttgagatcggaattcacaaca 16452127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 24 - 160
Target Start/End: Complemental strand, 5409005 - 5408869
Alignment:
Q  24 ctttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatcttact 123  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||| |||  | ||||||| || |||||||||||||||||||||||||||||| || |    
T  5409005 ctttgattcctagattagatctaggtgttgttattgttgattattgcttgtgctcactttgatattggttactactttcctttgctccacacatcatagt 5408906  T
Q  124 ttgtattggtgtggttttgagatcggaatacacaaca 160  Q
    |||||||||||||  |||||||  ||||| |||||||    
T  5408905 ttgtattggtgtgactttgagactggaattcacaaca 5408869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 24 - 160
Target Start/End: Complemental strand, 5413330 - 5413194
Alignment:
Q  24 ctttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatcttact 123  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||| |||  | ||||||| || |||||||||||||||||||||||||||||| || |    
T  5413330 ctttgattcctagattagatctaggtgttgttattgttgattattgcttgtgctcactttgatattggttactactttcctttgctccacacatcatagt 5413231  T
Q  124 ttgtattggtgtggttttgagatcggaatacacaaca 160  Q
    |||||||||||||  |||||||  ||||| |||||||    
T  5413230 ttgtattggtgtgactttgagactggaattcacaaca 5413194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 30834473 - 30834333
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| ||| || |||||||||||||| |||||||||||||||||| |||||  |||||||||| ||||||||| ||||||||||||||||||||     
T  30834473 ttcactttgattcatagattagatctaggtgctgttattgttgattattgcttgcattcactttgttattggttactattttcctttgctccacacatca 30834374  T
Q  120 tactttgtattggtgtggttttgagatcggaatacacaaca 160  Q
    || || ||||||||||| |||||||| || ||| |||||||    
T  30834373 tatttcgtattggtgtgattttgagaccgaaattcacaaca 30834333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 26 - 161
Target Start/End: Complemental strand, 3072690 - 3072551
Alignment:
Q  26 ttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatcttacttt 125  Q
    |||||||||| |||||||||| ||| | || ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| || ||     
T  3072690 ttgtttcctagattagatctatgtgctatttttgttgattattgcttgcacacactttgttagtggttactactttcctttgctccacacatcatatttc 3072591  T
Q  126 gtattggtgtg----gttttgagatcggaatacacaacat 161  Q
    |||||||||||    | |||||||||||||| ||||||||    
T  3072590 gtattggtgtgacacgatttgagatcggaattcacaacat 3072551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 9182970 - 9182857
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||| |||    ||||||| || ||||||||||||||||||||||||||||||     
T  9182970 ttcactttgattcctagattagatctaggtgttgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgctccacacatca 9182871  T
Q  120 tactttgtattggt 133  Q
    || |||||||||||    
T  9182870 tagtttgtattggt 9182857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 6097380 - 6097266
Alignment:
Q  26 ttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatcttacttt 125  Q
    ||||| |||| |||||||| ||||| |||| ||||||||||| | |||||| |||||||||||||||||||||||||| |||||||||||||| | ||||    
T  6097380 ttgttacctagattagatcaaggtgctgtttttgttgattatagcttgcacacactttgttagtggttactactttccgttgctccacacatcattcttt 6097281  T
Q  126 gtattggtgtggttt 140  Q
    | || ||||||||||    
T  6097280 gcatcggtgtggttt 6097266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 28137349 - 28137225
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||| ||||||||||||| | |||||| |||     |||||| || ||||||||||||||||||||||||||| ||     
T  28137349 ttcactttgattcctatattagatctatgtgttgttattgtcg-ttattgcttgtgtttactttgatattggttactactttcctttgctccacacgtca 28137251  T
Q  120 tactttgtattggtgtggttttgaga 145  Q
    || |||||||||||||| ||||||||    
T  28137250 tagtttgtattggtgtgattttgaga 28137225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 24 - 141
Target Start/End: Complemental strand, 31404610 - 31404493
Alignment:
Q  24 ctttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatcttact 123  Q
    ||||| |||||| |||||||||||||| |||||||||||||||||| |||  | ||||||| || || |||||| |||||||||||||||||||| || |    
T  31404610 ctttgattcctagattagatctaggtgctgttattgttgattattgcttgtgctcactttgatattgattactattttcctttgctccacacatcatagt 31404511  T
Q  124 ttgtattggtgtggtttt 141  Q
    | ||||||| ||| ||||    
T  31404510 tcgtattggagtgatttt 31404493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 71 - 140
Target Start/End: Original strand, 412368 - 412438
Alignment:
Q  71 ttgcacccactttgttag-tggttactactttcctttgctccacacatcttactttgtattggtgtggttt 140  Q
    |||||| ||||||||| | |||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  412368 ttgcacacactttgtttggtggttactactttcctttgctccacacatcatacttggtattggtgtggttt 412438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 27648091 - 27648205
Alignment:
Q  26 ttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccac--tttgttag-tggttactactttcctttgctccacacatcttac 122  Q
    |||||||||| |||||||||||||| |||| ||||||||||||| |||||| |||  |||||| | ||||||| ||| |||||||||||||||||| | |    
T  27648091 ttgtttcctagattagatctaggtggtgtt-ttgttgattattgcttgcacacacactttgttcggtggttaccactctcctttgctccacacatcattc 27648189  T
Q  123 tttgtattggtgtggtt 139  Q
     ||||||||||||||||    
T  27648190 -ttgtattggtgtggtt 27648205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 26954229 - 26954106
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||||||| ||||||||||| |||||  ||      ||||||  | |||||||||||||| |||||||||||||||     
T  26954229 ttcactttgattcctagattagatctaggtgctgttattgttg-ttatttcttatgtttactttgaaattggttactactttcttttgctccacacatca 26954131  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || |||||||||||||| |||||||    
T  26954130 tagtttgtattggtgtgattttgag 26954106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 16555109 - 16555223
Alignment:
Q  26 ttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttg-ttagtggttactactttcctttgctccacacatc-ttact 123  Q
    |||||||||| |||||||||||||| |||| |||||| || ||| |||||| ||||||| || |||||||| ||| ||||| |||||||||||| ||| |    
T  16555109 ttgtttcctagattagatctaggtggtgtt-ttgttgtttgttgcttgcacacactttgtttggtggttaccactctccttggctccacacatcattatt 16555207  T
Q  124 ttgtattggtgtggtt 139  Q
    | ||||||||||||||    
T  16555208 tagtattggtgtggtt 16555223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 26 - 139
Target Start/End: Complemental strand, 16578446 - 16578332
Alignment:
Q  26 ttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttg-ttagtggttactactttcctttgctccacacatc-ttact 123  Q
    |||||||||| |||||||||||||| |||| |||||| || ||| |||||| ||||||| || |||||||| ||| ||||| |||||||||||| ||| |    
T  16578446 ttgtttcctagattagatctaggtggtgtt-ttgttgtttgttgcttgcacacactttgtttggtggttaccactctccttggctccacacatcattatt 16578348  T
Q  124 ttgtattggtgtggtt 139  Q
    | ||||||||||||||    
T  16578347 tagtattggtgtggtt 16578332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 16616934 - 16617048
Alignment:
Q  26 ttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttg-ttagtggttactactttcctttgctccacacatc-ttact 123  Q
    |||||||||| |||||||||||||| |||| |||||| || ||| |||||| ||||||| || |||||||| ||| ||||| |||||||||||| ||| |    
T  16616934 ttgtttcctagattagatctaggtggtgtt-ttgttgtttgttgcttgcacacactttgtttggtggttaccactctccttggctccacacatcattatt 16617032  T
Q  124 ttgtattggtgtggtt 139  Q
    | ||||||||||||||    
T  16617033 tagtattggtgtggtt 16617048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 16631665 - 16631779
Alignment:
Q  26 ttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttg-ttagtggttactactttcctttgctccacacatc-ttact 123  Q
    |||||||||| |||||||||||||| |||| |||||| || ||| |||||| ||||||| || |||||||| ||| ||||| |||||||||||| ||| |    
T  16631665 ttgtttcctagattagatctaggtggtgtt-ttgttgtttgttgcttgcacacactttgtttggtggttaccactctccttggctccacacatcattatt 16631763  T
Q  124 ttgtattggtgtggtt 139  Q
    | ||||||||||||||    
T  16631764 tagtattggtgtggtt 16631779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 16653352 - 16653466
Alignment:
Q  26 ttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttg-ttagtggttactactttcctttgctccacacatc-ttact 123  Q
    |||||||||| |||||||||||||| |||| |||||| || ||| |||||| ||||||| || |||||||| ||| ||||| |||||||||||| ||| |    
T  16653352 ttgtttcctagattagatctaggtggtgtt-ttgttgtttgttgcttgcacacactttgtttggtggttaccactctccttggctccacacatcattatt 16653450  T
Q  124 ttgtattggtgtggtt 139  Q
    | ||||||||||||||    
T  16653451 tagtattggtgtggtt 16653466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 160
Target Start/End: Complemental strand, 5406135 - 5406002
Alignment:
Q  24 ctttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatcttact 123  Q
    ||||| |||||| |||||||||||||| | ||||||   ||||||| |||  | ||||||  || ||||||||||||| |||| ||||||||||| || |    
T  5406135 ctttgattcctagattagatctaggtgctattattg---attattgcttgtgctcactttaatattggttactacttttctttactccacacatcatagt 5406039  T
Q  124 ttgtattggtgtggttttgagatcggaatacacaaca 160  Q
    |||||||||||||  ||| ||| |||||| |||||||    
T  5406038 ttgtattggtgtgactttaagaccggaattcacaaca 5406002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 160
Target Start/End: Complemental strand, 5410460 - 5410327
Alignment:
Q  24 ctttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatcttact 123  Q
    ||||| |||||| |||||||||||||| | ||||||   ||||||| |||  | ||||||  || ||||||||||||| |||| ||||||||||| || |    
T  5410460 ctttgattcctagattagatctaggtgctattattg---attattgcttgtgctcactttaatattggttactacttttctttactccacacatcatagt 5410364  T
Q  124 ttgtattggtgtggttttgagatcggaatacacaaca 160  Q
    |||||||||||||  ||| ||| |||||| |||||||    
T  5410363 ttgtattggtgtgactttaagaccggaattcacaaca 5410327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 33160289 - 33160177
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| |||||||||||||||||||| | ||| || ||| ||| |   ||||||  | ||||||||| ||||||||||||||||||||     
T  33160289 ttcactttgattactagattagatctaggtgttgttaatattg-ttgttgcttgtatttactttgaaattggttactattttcctttgctccacacatca 33160191  T
Q  120 tactttgtattggt 133  Q
    || |||||||||||    
T  33160190 tagtttgtattggt 33160177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 3038806 - 3038742
Alignment:
Q  80 ctttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtggttttgag 144  Q
    ||||| || |||||| ||||||||||||||| ||||||| || ||||||||||| || |||||||    
T  3038806 ctttgatattggttattactttcctttgctcgacacatcatagtttgtattggtctgattttgag 3038742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 16569249 - 16569347
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcc-tttgctccacacatc 118  Q
    ||||||||| || ||| |||||||||||||| || |||||||| |||||| |||    ||||||| |  ||||||||||||||| |||||||||||||||    
T  16569249 ttcactttgatttctagattagatctaggtgctgctattgttg-ttattgcttgagttcactttgattttggttactactttccttttgctccacacatc 16569347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 33211128 - 33211086
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttg 62  Q
    ||||||||| |||||| |||||||||||||||| |||||||||    
T  33211128 ttcactttgattcctagattagatctaggtgttattattgttg 33211086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 161
Target Start/End: Complemental strand, 22963568 - 22963507
Alignment:
Q  100 ttcctttgctccacacatcttactttgtattggtgtggttttgagatcggaatacacaacat 161  Q
    |||||| |||||||||||| || |||||||||||||| |||||||   ||||| ||||||||    
T  22963568 ttccttagctccacacatcatagtttgtattggtgtgattttgagtctggaattcacaacat 22963507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 23824825 - 23824886
Alignment:
Q  100 ttcctttgctccacacatcttactttgtattggtgtggttttgagatcggaatacacaacat 161  Q
    |||||| |||||||||||| || |||||||||||||| |||||||   ||||| ||||||||    
T  23824825 ttccttagctccacacatcatagtttgtattggtgtgattttgagtctggaattcacaacat 23824886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 9182860 - 9182824
Alignment:
Q  89 tggttactactttcctttgctccacacatcttacttt 125  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  9182860 tggttactactttcctttactccacacatcatacttt 9182824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 1e-42; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 5260262 - 5260122
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||     
T  5260262 ttcactttgattcctaaattagatctaggtgttgttattgttgattattgcttgcactcactttgttattggttactactttcctttgctccacacatca 5260163  T
Q  120 tactttgtattggtgtggttttgagatcggaatacacaaca 160  Q
    || || |||||||| ||  ||||||| | |||| |||||||    
T  5260162 tagttcgtattggtttgactttgagaccagaattcacaaca 5260122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 23200075 - 23199954
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    |||| ||||||||||| |||||||||||||||| |||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||| |||     
T  23200075 ttcattttgtttcctagattagatctaggtgtt-ttattgttgattattgcttgcactcactttgttattggttactactttcctttgctccacatatca 23199977  T
Q  120 tactttgtattggtgtggttttg 142  Q
    |||||||||||||||||||||||    
T  23199976 tactttgtattggtgtggttttg 23199954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 5258083 - 5257943
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||||| |||||  |||||||||| ||||||||||||||||||||||||||||||     
T  5258083 ttcactttgattcctagattagatctaggtgctgttattgttgattattgcttgcattcactttgttattggttactactttcctttgctccacacatca 5257984  T
Q  120 tactttgtattggtgtggttttgagatcggaatacacaaca 160  Q
    || || |||||||||||  ||||||| |||||| |||||||    
T  5257983 tagttcgtattggtgtgactttgagaccggaattcacaaca 5257943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 26 - 142
Target Start/End: Complemental strand, 7779934 - 7779818
Alignment:
Q  26 ttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatcttacttt 125  Q
    |||||||||| |||||||||||||| |||| ||||||||||||| |||||| ||||||||| |||||||| ||| ||||||||||||||||||||||||     
T  7779934 ttgtttcctagattagatctaggtgctgtttttgttgattattgcttgcacacactttgttggtggttaccactctcctttgctccacacatcttacttc 7779835  T
Q  126 gtattggtgtggttttg 142  Q
    |||||||||||||||||    
T  7779834 gtattggtgtggttttg 7779818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 9636063 - 9635923
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||||| |||    ||||||| || ||||||||||||||||||||||||||||||     
T  9636063 ttcactttgattcctagattagatctaggtgctgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgctccacacatca 9635964  T
Q  120 tactttgtattggtgtggttttgagatcggaatacacaaca 160  Q
    || |||||||||||||| |||||||| |||||| |||||||    
T  9635963 tagtttgtattggtgtgattttgagaccggaattcacaaca 9635923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 7762495 - 7762619
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||  |||    ||||||| || ||||||||||||||||||||||||||||||     
T  7762495 ttcactttgattcctaaattagatctaggtgttgttattgttgattattacttgtgttcactttgatattggttactactttcctttgctccacacatca 7762594  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || ||||||||||||| ||||||||    
T  7762595 tagtttgtattggtgtagttttgag 7762619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 26 - 160
Target Start/End: Original strand, 801324 - 801463
Alignment:
Q  26 ttgtttcctaaattagatctaggtgttgttatt-gttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatcttactt 124  Q
    |||||||||| |||||||||||||| |||| || ||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||| || ||    
T  801324 ttgtttcctagattagatctaggtgctgttttttgttgattattgcttgcacacactttattagtggttactactttcctttgctccacacatcatattt 801423  T
Q  125 tgtattggtgtg----gttttgagatcggaatacacaaca 160  Q
     |||||||||||    |||||||||||||||| |||||||    
T  801424 cgtattggtgtgacacgttttgagatcggaattcacaaca 801463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 9634760 - 9634621
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||||| |||    ||||||| || |||||||||||||||||||||||||| |||     
T  9634760 ttcactttgattcctagattagatctaggtgctgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgctccaca-atca 9634662  T
Q  120 tactttgtattggtgtggttttgagatcggaatacacaaca 160  Q
    || |||||||||||||| |||||||| |||||| |||||||    
T  9634661 tagtttgtattggtgtgattttgagaccggaattcacaaca 9634621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 40735611 - 40735734
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||||| |||    ||||||| || ||||||||||||||||||||||||||||||     
T  40735611 ttcactttggttcctatattagatctaggtgctgttattgttgattattgtttgtgttcactttgatattggttactactttcctttgctccacacatca 40735710  T
Q  120 tactttgtattggtgtggttttga 143  Q
    || |||||||||||||| ||||||    
T  40735711 taatttgtattggtgtgattttga 40735734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 9581512 - 9581652
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| ||| || |||||||||||||| |||||||||||||||||| |||  | ||||||| || ||||||||||||||||||||| ||||||||     
T  9581512 ttcactttgattcatagattagatctaggtgctgttattgttgattattgcttgtgctcactttgatattggttactactttcctttgcttcacacatca 9581611  T
Q  120 tactttgtattggtgtggttttgagatcggaatacacaaca 160  Q
    || ||| |||||||||| |||||||  |||||| |||||||    
T  9581612 tagtttatattggtgtgattttgagtccggaattcacaaca 9581652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 19683827 - 19683687
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||  |||||| |||||||||||||| |||||||||||||||||| |||    ||||||| || |||||||||||||||||||||||| |||||     
T  19683827 ttcacttttattcctagattagatctaggtgctgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgctccaaacatca 19683728  T
Q  120 tactttgtattggtgtggttttgagatcggaatacacaaca 160  Q
    || ||||||||||||||  ||||||| |||||| |||||||    
T  19683727 tagtttgtattggtgtgagtttgagaccggaattcacaaca 19683687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 7764694 - 7764836
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||| | |||||||||||||| |||||||||||||||||| |||    ||||||| || |||||||||||||||||| || ||||||||     
T  7764694 ttcactttgattccaagattagatctaggtgctgttattgttgattattgcttgtgttcactttgatattggttactactttcctttacttcacacatca 7764793  T
Q  120 tactttgtattggtgtggttttgagatcggaatacacaacatg 162  Q
    || ||||||||||||| ||||||||  |||||| |||||||||    
T  7764794 tagtttgtattggtgtagttttgagtccggaattcacaacatg 7764836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 37408688 - 37408804
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||||| |||  | ||||||  || ||||||||||||||||||||||||||||||     
T  37408688 ttcactttgattcctagattagatctaggtgctgttattgttgattattgtttgtgctcactttaatattggttactactttcctttgctccacacatca 37408787  T
Q  120 tactttgtattggtgtg 136  Q
    || ||||||||| ||||    
T  37408788 tattttgtattgatgtg 37408804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 23197876 - 23197761
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    |||| ||||||||||| |||||||||| ||||| |||||||||||||||| ||||      ||| ||| |||||||||||||||||||||||||| |||     
T  23197876 ttcattttgtttcctagattagatctatgtgtt-ttattgttgattattgcttgc------tttattattggttactactttcctttgctccacatatca 23197784  T
Q  120 tactttgtattggtgtggttttg 142  Q
    |||||||||||||||||||||||    
T  23197783 tactttgtattggtgtggttttg 23197761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 40734728 - 40734851
Alignment:
Q  22 cactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatctta 121  Q
    ||||||| |||||| |||||||||||||| ||||||| || ||||||  |||    ||||||| || |||||||||||||||||||||||||||||| ||    
T  40734728 cactttgattcctagattagatctaggtgctgttattttttattatttcttgtgttcactttgatattggttactactttcctttgctccacacatcata 40734827  T
Q  122 ctttgtattggtgtggttttgaga 145  Q
     |||||||||||||| ||||||||    
T  40734828 gtttgtattggtgtgattttgaga 40734851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 29811097 - 29811222
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||||| |||    | |||||  | |||||||||||||||||||||||||| |||     
T  29811097 ttcactttgattcctagattagatctaggtgctgttattgttgattattgcttgtgttctctttgaaattggttactactttcctttgctccacaaatca 29811196  T
Q  120 tactttgtattggtgtg-gttttgag 144  Q
    || |||||||||||||| ||||||||    
T  29811197 tattttgtattggtgtgagttttgag 29811222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 29813290 - 29813415
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| ||| || |||||||||||||| |||||||||||||||||| |||    ||||||| || | ||||||||||| ||||||||||||||||     
T  29813290 ttcactttgattcttagattagatctaggtgctgttattgttgattattgtttgtgttcactttgatattagttactacttttctttgctccacacatca 29813389  T
Q  120 tactttgtattggtgtg-gttttgag 144  Q
    || |||||||||||||| ||||||||    
T  29813390 tagtttgtattggtgtgagttttgag 29813415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 22834945 - 22834822
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||||||||||||||||||| |||||   ||     |||||| || ||||||||||||||||||||||||||||||     
T  22834945 ttcactttgattcctagattagatctaggtgttgttattgttg-ttattacctgtgtttactttgatattggttactactttcctttgctccacacatca 22834847  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || |||||||||||||| |||||||    
T  22834846 tagtttgtattggtgtgattttgag 22834822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 51399043 - 51399167
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||||| | |  | ||||||| || || || |||||||||||||||||| |||||     
T  51399043 ttcactttgattcctagattagatctaggtgctgttattgttgattattgctagtgctcactttgatattgttttctactttcctttgctccatacatca 51399142  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || ||||||||||| || |||||||    
T  51399143 tagtttgtattggtatgattttgag 51399167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 142
Target Start/End: Original strand, 45095396 - 45095514
Alignment:
Q  24 ctttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatcttact 123  Q
    ||||| ||| || |||||||||| ||| |||||||||||||||||| |||  | ||||||| || |||||||||||||||||||||| ||||||| || |    
T  45095396 ctttgattcatagattagatctatgtgctgttattgttgattattgcttgtgctcactttgatattggttactactttcctttgctctacacatcatagt 45095495  T
Q  124 ttgtattggtgtggttttg 142  Q
    |||||||| |||| |||||    
T  45095496 ttgtattgatgtgattttg 45095514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 761074 - 761189
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||||||| || |||||||| |||||| |||    ||||||| |  ||||||||||||||||||||||||||||||     
T  761074 ttcactttgattcctagattagatctaggtgctgctattgttg-ttattgcttgagttcactttgattttggttactactttcctttgctccacacatca 761172  T
Q  120 tactttgtattggtgtg 136  Q
    || ||||||||||||||    
T  761173 tagtttgtattggtgtg 761189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 5236396 - 5236272
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||||| | | |||||||||||||||| |||    ||||||| ||  | ||||||||||||| | |||||||||||     
T  5236396 ttcactttgattcctagattagatctaggagctcttattgttgattattgcttgtgttcactttgatatcgattactactttcctgtactccacacatca 5236297  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || |||||||||||||| |||||||    
T  5236296 tagtttgtattggtgtgattttgag 5236272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 29682586 - 29682706
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| ||||||  ||||||||||||| || |||||||| |||||| ||| |  ||||||  |  || |||||||||||||||||||||||||||     
T  29682586 ttcactttgattcctaggttagatctaggtgctgctattgttg-ttattgcttgtattcactttaattttgattactactttcctttgctccacacatca 29682684  T
Q  120 tactttgtattggtgtggtttt 141  Q
    || |||||||||||||| ||||    
T  29682685 tagtttgtattggtgtgatttt 29682706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 54635362 - 54635475
Alignment:
Q  26 ttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccac--tttgttag-tggttactactttcctttgctccacacatc-tta 121  Q
    |||||||||| |||||||||||||| |||| ||||||||||||| |||||| |||  |||||| | ||||||| ||| |||||||||||||||||| |||    
T  54635362 ttgtttcctagattagatctaggtggtgtt-ttgttgattattgcttgcacacacactttgtttggtggttaccactctcctttgctccacacatcatta 54635460  T
Q  122 ctttgtattggtgtg 136  Q
     || |||||||||||    
T  54635461 tttagtattggtgtg 54635475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 6716738 - 6716854
Alignment:
Q  26 ttgtttcctaaattagatctaggtgttgttattgttgattattgattg--cacccactttg-ttagtggttactactttcctttgctccacacatcttac 122  Q
    |||||||||| |||||||||||||| |||| | ||||||||||| |||  ||| ||||||| || ||||||||  |||||| ||||||||||||||   |    
T  6716738 ttgtttcctagattagatctaggtggtgttttggttgattattgcttgcacacacactttgtttggtggttaccgctttccgttgctccacacatcactc 6716837  T
Q  123 tttgtattggtgtggtt 139  Q
    |||| ||||||||||||    
T  6716838 tttgcattggtgtggtt 6716854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 9666349 - 9666285
Alignment:
Q  80 ctttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtggttttgag 144  Q
    ||||| || |||||||||||||||||||||||||| ||| || |||||||||||||| |||||||    
T  9666349 ctttgatattggttactactttcctttgctccacagatcatagtttgtattggtgtgattttgag 9666285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 23391851 - 23391736
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| |||||||||||||||||||||| ||| || ||  |||    ||||||| || |||||| ||||||||||| |||||||||||     
T  23391851 ttcactttgattactagattagatctaggtgttgttattattg-ttgtttcttgtgttcactttgatattggttattactttccttttctccacacatca 23391753  T
Q  120 tactttgtattggtgtg 136  Q
    || ||||||||||||||    
T  23391752 tagtttgtattggtgtg 23391736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 29196269 - 29196213
Alignment:
Q  80 ctttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtg 136  Q
    ||||| || |||||||||||||||||||||||||||||| || ||||||||||||||    
T  29196269 ctttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtg 29196213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 39153235 - 39153179
Alignment:
Q  89 tggttactactttcctttgctccacacatcttactttgtattggtgtg-gttttgag 144  Q
    |||||||||||||||||||||||||||||| || |||||||||||||| ||||||||    
T  39153235 tggttactactttcctttgctccacacatcatagtttgtattggtgtgagttttgag 39153179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 44700422 - 44700299
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| |||||||||||||||||||||| ||| || ||| |||     |||||| || ||||||||||||| ||||||||||  ||||     
T  44700422 ttcactttgattactagattagatctaggtgttgttattattg-ttgttgcttgtgtttactttgatattggttactacttttctttgctccatgcatca 44700324  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || |||||||||||||| |||||||    
T  44700323 tagtttgtattggtgtgattttgag 44700299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 139
Target Start/End: Original strand, 45283227 - 45283340
Alignment:
Q  28 gtttcctaaattagatctaggtgttgttattgttgattattgattgcacc--cactttgttag-tggttactactttcctttgctccacacatcttactt 124  Q
    |||||||| |||||||||||||| |||| ||||||||||||| ||||||   ||||||||| | |||||||  || ||| | |||||||||||| | |||    
T  45283227 gtttcctagattagatctaggtggtgtt-ttgttgattattgcttgcacaaacactttgtttggtggttaccgctctccgtcgctccacacatcattctt 45283325  T
Q  125 tgtattggtgtggtt 139  Q
    |||||||||||||||    
T  45283326 tgtattggtgtggtt 45283340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 89 - 144
Target Start/End: Original strand, 16499312 - 16499367
Alignment:
Q  89 tggttactactttcctttgctccacacatcttactttgtattggtgtggttttgag 144  Q
    |||||||||||||||||||||||||||||  || ||||||||| |||| |||||||    
T  16499312 tggttactactttcctttgctccacacattatagtttgtattgatgtgattttgag 16499367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 21350946 - 21350850
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||| |||||||||||||||    ||| |||     |||||| || ||||||||||||||||||||| |||||||||    
T  21350946 ttcactttgattcctagattagatctaagtgttgttattgttg----ttgtttgtgtttactttgatattggttactactttcctttgcttcacacatct 21350851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 37406987 - 37407034
Alignment:
Q  89 tggttactactttcctttgctccacacatcttactttgtattggtgtg 136  Q
    |||||||||||||||||||||||||||||| || |||||| |||||||    
T  37406987 tggttactactttcctttgctccacacatcatattttgtagtggtgtg 37407034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 27305597 - 27305534
Alignment:
Q  79 actttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtggttttgag 144  Q
    |||||| || |||||||||||||||||||||||||||||| || ||  |||||||||| |||||||    
T  27305597 actttgatattggttactactttcctttgctccacacatcatagtt--tattggtgtgattttgag 27305534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 2074952 - 2074900
Alignment:
Q  89 tggttactactttcctttgctccacacatcttactttgtattggtgtggttttg 142  Q
    |||||||||||||||||||||||||||||| || ||| |||||||||| |||||    
T  2074952 tggttactactttcctttgctccacacatcatagttt-tattggtgtgattttg 2074900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 31314740 - 31314793
Alignment:
Q  91 gttactactttcctttgctccacacatcttactttgtattggtgtggttttgag 144  Q
    |||| ||||||||||||||||| ||||| || |||||||||||||| |||||||    
T  31314740 gttattactttcctttgctccatacatcatagtttgtattggtgtgattttgag 31314793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 23410200 - 23410155
Alignment:
Q  91 gttactactttcctttgctccacacatcttactttgtattggtgtg 136  Q
    ||||||||||||||||| |||||||||| || ||||||||| ||||    
T  23410200 gttactactttcctttgatccacacatcatagtttgtattgatgtg 23410155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 118
Target Start/End: Original strand, 32891388 - 32891417
Alignment:
Q  89 tggttactactttcctttgctccacacatc 118  Q
    ||||||||||||||||||||||||||||||    
T  32891388 tggttactactttcctttgctccacacatc 32891417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 22 - 160
Target Start/End: Original strand, 11795 - 11935
Alignment:
Q  22 cactttgt-ttcctaaattag-atctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    |||||||| |||||| ||||| ||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||     
T  11795 cactttgtattcctagattagtatctaggtgctgttattgttgattattgcttgcacacactttgttagtggttactactttcctttgctccacacatca 11894  T
Q  120 tactttgtattggtgtggttttgagatcggaatacacaaca 160  Q
    || || |||||||||||  ||||||| |||||| |||||||    
T  11895 tagttcgtattggtgtgactttgagaccggaattcacaaca 11935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 7e-38; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 48143277 - 48143417
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||| |||    ||||||| || ||||||||||||||||||||||||||||||     
T  48143277 ttcactttgattcctagattagatctaggtgttgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgctccacacatca 48143376  T
Q  120 tactttgtattggtgtggttttgagatcggaatacacaaca 160  Q
    || |||||||||||||| |||||||  |||||| |||||||    
T  48143377 tagtttgtattggtgtgattttgagtccggaattcacaaca 48143417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 13992230 - 13992114
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| | |||| |||||||||||||| |||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||     
T  13992230 ttcactttgatacctagattagatctaggtgctgttattgttgattattgcttgcactcactttgttattggttactactttcctttgctccacacatca 13992131  T
Q  120 tactttgtattggtgtg 136  Q
    || || |||||||||||    
T  13992130 tatttcgtattggtgtg 13992114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 5370021 - 5369881
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||||| |||    ||||||| || || ||||||||||||||| |||||||||||     
T  5370021 ttcactttgattcctagattagatctaggtgctgttattgttgattattgcttgtgttcactttgatattgattactactttcctttactccacacatca 5369922  T
Q  120 tactttgtattggtgtggttttgagatcggaatacacaaca 160  Q
    || |||||||||||||| |||||||| |||||| |||||||    
T  5369921 tagtttgtattggtgtgattttgagaccggaattcacaaca 5369881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 56178575 - 56178451
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||  |||||| ||||||||||||||||||||||||| ||||||| |||    ||||||| || ||||||||||||||||||||||||||||||     
T  56178575 ttcactttcattcctagattagatctaggtgttgttattgtttattattgcttgtgttcactttgatattggttactactttcctttgctccacacatca 56178476  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || |||||||||||||| |||||||    
T  56178475 tagtttgtattggtgtgattttgag 56178451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 20 - 163
Target Start/End: Complemental strand, 31495244 - 31495096
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccac--tttgttagtggttactactttcctttgctccacacat 117  Q
    |||||||||||||||| |||||||||||||| |||| ||||||||||||| |||||| |||  ||||||  |||||||||||||||||||||||||||||    
T  31495244 ttcactttgtttcctagattagatctaggtgctgtt-ttgttgattattgcttgcacacacactttgttgatggttactactttcctttgctccacacat 31495146  T
Q  118 cttactttgtattggtgtg----gttttgagatcggaatacacaacatgt 163  Q
    | || || |||||||| ||    | |||||||||||||| ||||||||||    
T  31495145 catatttcgtattggtatgacacgatttgagatcggaattcacaacatgt 31495096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 34570353 - 34570230
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| ||| || ||||||||||||||||||||||||||||||||| |||    || |||| || ||||||||||||||||||||||||||||||     
T  34570353 ttcactttgattcttagattagatctaggtgttgttattgttgattattgtttgtgttcattttgatattggttactactttcctttgctccacacatca 34570254  T
Q  120 tactttgtattggtgtggttttga 143  Q
    || ||| |||||||||| ||||||    
T  34570253 tagtttatattggtgtgattttga 34570230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 37740854 - 37740979
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||||||||     ||||||| || || ||||||||||||| |||||||||||||     
T  37740854 ttcactttgattcctacattagatctaggtgctgttattgttgattattgattctgttcactttgatattgattactactttcctgtgctccacacatca 37740953  T
Q  120 tactttgtattggtgtg-gttttgag 144  Q
    || |||||||||||||| ||||||||    
T  37740954 tagtttgtattggtgtgagttttgag 37740979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 47038354 - 47038231
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||||||||||||||||||| |||||| |||     |||||| || ||||||||||||||||||| ||||||||||     
T  47038354 ttcactttgattcctagattagatctaggtgttgttattgttg-ttattgtttgtgtttactttgatattggttactactttcctttgttccacacatca 47038256  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || |||||||||||||| |||||||    
T  47038255 tagtttgtattggtgtgattttgag 47038231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 25 - 144
Target Start/End: Complemental strand, 52082597 - 52082478
Alignment:
Q  25 tttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatcttactt 124  Q
    |||| |||||| || ||||||||||| |||||||||||||||||| |||    ||||||| || ||||||||||||||||||| |||||||||| || ||    
T  52082597 tttgattcctagataagatctaggtgctgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgttccacacatcataatt 52082498  T
Q  125 tgtattggtgtggttttgag 144  Q
    |||||||||||| |||||||    
T  52082497 tgtattggtgtgattttgag 52082478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 54199847 - 54199723
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| ||| || |||||||||||||| |||||||| ||||||||| |||    ||||||| || |||||||||||||||||||||||| |||||     
T  54199847 ttcactttgattcttagattagatctaggtgatgttattgctgattattgcttgtgttcactttgatactggttactactttcctttgctccatacatca 54199748  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    |  |||||||||||||| |||||||    
T  54199747 tcgtttgtattggtgtgattttgag 54199723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 78 - 160
Target Start/End: Complemental strand, 29999710 - 29999628
Alignment:
Q  78 cactttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtggttttgagatcggaatacacaaca 160  Q
    ||||||| || |||||||||||||||||||||||||||||| || |||||||||||||| |||||||| |||||| |||||||    
T  29999710 cactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattttgagaccggaattcacaaca 29999628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 31 - 144
Target Start/End: Complemental strand, 52095290 - 52095177
Alignment:
Q  31 tcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatcttactttgtatt 130  Q
    ||||| ||||||||||||||||||||||||||||||||  |||    ||||||| || || |||||||||||||||| ||||||| || || ||||||||    
T  52095290 tcctagattagatctaggtgttgttattgttgattattacttgtgttcactttgatattgattactactttcctttgttccacacgtcatagtttgtatt 52095191  T
Q  131 ggtgtggttttgag 144  Q
    |||||| |||||||    
T  52095190 ggtgtgattttgag 52095177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 48893581 - 48893458
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| ||| |  |||||||||||||| ||||||||||| |||||| |||     |||||| || ||||||||||||||||||||||||||||||     
T  48893581 ttcactttgattcttggattagatctaggtgctgttattgttg-ttattgcttgtgtttactttgatattggttactactttcctttgctccacacatca 48893483  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || |||||||||||||| |||||||    
T  48893482 tagtttgtattggtgtgattttgag 48893458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 20 - 134
Target Start/End: Complemental strand, 9927398 - 9927284
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||| ||||||||| |||||||||||||||||| |||     |||||| || |||| |||||||||||||||||||||||||     
T  9927398 ttcactttgattcctagattaaatctaggtgctgttattgttgattattgcttgtgtttactttgatattggtaactactttcctttgctccacacatca 9927299  T
Q  120 tactttgtattggtg 134  Q
    || ||| ||||||||    
T  9927298 tagtttatattggtg 9927284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 5872047 - 5872168
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| |||||||||||||||||||||| ||| || ||| |||    ||||||| || ||||||||||||||||||||||||||||||     
T  5872047 ttcactttgattactagattagatctaggtgttgttattattg-ttgttgtttgtgttcactttgatattggttactactttcctttgctccacacatc- 5872144  T
Q  120 tactttgtattggtgtggttttgag 144  Q
     | |||||||||||||| |||||||    
T  5872145 -agtttgtattggtgtgattttgag 5872168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 26175575 - 26175451
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| |||||||||||||||||||||| ||| | |||| |||     ||||||  | ||||||||||||||||||||||||||||||     
T  26175575 ttcactttgattactagattagatctaggtgttgttattattgct-attgcttgtgtttactttgaaattggttactactttcctttgctccacacatca 26175477  T
Q  120 tactttgtattggtgtg-gttttgag 144  Q
    || |||||||||||||| ||||||||    
T  26175476 tagtttgtattggtgtgagttttgag 26175451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 46147334 - 46147210
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| ||||||||||||| |||||||| ||| || ||| |||    ||||||| || ||||||||||||||||||||||||||||||     
T  46147334 ttcactttgattactagattagatctaggtattgttattattg-ttgttgcttgtgttcactttgatattggttactactttcctttgctccacacatca 46147236  T
Q  120 tactttgtattggtgtg-gttttgag 144  Q
    || |||| ||||||||| ||||||||    
T  46147235 tagtttgcattggtgtgagttttgag 46147210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 52467297 - 52467172
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| |||||||||| ||||||||||| ||||| |||| |||     |||||| || ||||||| ||||||||||||| ||||||||     
T  52467297 ttcactttgattactagattagatctatgtgttgttattattgatgattgcttgtctttactttgatattggttaccactttcctttgcttcacacatca 52467198  T
Q  120 tactttgtattggtgtg-gttttgag 144  Q
    || |||||||||||||| ||||||||    
T  52467197 tagtttgtattggtgtgagttttgag 52467172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 45687066 - 45687002
Alignment:
Q  80 ctttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtggttttgag 144  Q
    ||||| || |||||||||||||||||||||||| ||||| || |||||||||||||| |||||||    
T  45687066 ctttgatattggttactactttcctttgctccatacatcatagtttgtattggtgtgattttgag 45687002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 35 - 161
Target Start/End: Complemental strand, 36463319 - 36463195
Alignment:
Q  35 aaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatcttactttgtattggtg 134  Q
    |||||||||||||||||||||||| ||| || ||| |||     |||||| || |||||| ||||||||||| ||||||||||| || |||||||| |||    
T  36463319 aaattagatctaggtgttgttattattg-ttgttgcttgtgtttactttgatattggttattactttcctttactccacacatcatagtttgtattagtg 36463221  T
Q  135 tggttttgagatcggaatacacaacat 161  Q
    || ||||||| || |||| ||||||||    
T  36463220 tgattttgag-tccgaattcacaacat 36463195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 5429908 - 5429957
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattg 69  Q
    ||||||||| |||||| |||||||||||||| ||||||||||||||||||    
T  5429908 ttcactttgattcctagattagatctaggtgctgttattgttgattattg 5429957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 12743799 - 12743743
Alignment:
Q  89 tggttactactttcctttgctccacacatcttactttgtattggtgtg-gttttgag 144  Q
    |||||||||||||||||||||||||||| | || |||||||||||||| ||||||||    
T  12743799 tggttactactttcctttgctccacacaacatagtttgtattggtgtgagttttgag 12743743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 29254723 - 29254861
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| |||||||||||||||||||||| ||| |  ||| |||    ||||||  || |||||||||||||| |||||||||||||||     
T  29254723 ttcactttgattactagattagatctaggtgttgttattattg-tcgttgtttgtgttcactttaatattggttactactttc-tttgctccacacatca 29254820  T
Q  120 tactttgtattggtgtggttttgagatcggaatacacaaca 160  Q
    || |||||||| ||||| |||| || || |||| |||||||    
T  29254821 tagtttgtattagtgtgattttaagttccgaattcacaaca 29254861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 31474376 - 31474491
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||  |||||| |||||||||||||||||||||||||| || ||| |||     |||||| || || ||||||||||| |||||| ||||||||     
T  31474376 ttcactttaattcctagattagatctaggtgttgttattgttg-ttgttgtttgtgtttactttgatattgattactactttcatttgctacacacatca 31474474  T
Q  120 tactttgtattggtgtg 136  Q
    |  ||||||||||||||    
T  31474475 ttgtttgtattggtgtg 31474491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 12739424 - 12739368
Alignment:
Q  89 tggttactactttcctttgctccacacatcttactttgtattggtgtg-gttttgag 144  Q
    |||||||||||||| ||| ||||||||||| || |||||||||||||| ||||||||    
T  12739424 tggttactactttcttttactccacacatcatagtttgtattggtgtgagttttgag 12739368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 4588240 - 4588278
Alignment:
Q  80 ctttgttagtggttactactttcctttgctccacacatc 118  Q
    ||||| |||||||||||| ||||||||||||||||||||    
T  4588240 ctttgatagtggttactattttcctttgctccacacatc 4588278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 5207717 - 5207666
Alignment:
Q  92 ttactactttcctttgctccacacatcttactttgtattggtgtggttttgag 144  Q
    ||||||||||||||||||||||||| | || ||| |||||||||| |||||||    
T  5207717 ttactactttcctttgctccacacaccata-tttatattggtgtgattttgag 5207666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 39731600 - 39731723
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||| |  ||| |||     
T  39731600 ttcactttgtttcctagattagatctaggtgttgttattgttgattattgcttgcacccactttgttattggttactacttttctttgttttacatatca 39731699  T
Q  120 tactttg-tattggtgtggttttg 142  Q
    ||||||| ||||||||||||||||    
T  39731700 tactttgttattggtgtggttttg 39731723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 4179002 - 4179118
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||||| || ||  |||||||||| ||||||||||||||||||||||||||||||     
T  4179002 ttcactttgattcctagattagatctaggtgctgttattgttgattattgcttacattcactttgttattggttactactttcctttgctccacacatca 4179101  T
Q  120 tactttgtattggtgtg 136  Q
    || ||||||||||||||    
T  4179102 tagtttgtattggtgtg 4179118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 48409036 - 48409152
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| | |||| |||||||||||||| |||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||     
T  48409036 ttcactttgatacctagattagatctaggtgctgttattgttgattattgcttgcactcactttgttattggttactactttcctttgctccacacatca 48409135  T
Q  120 tactttgtattggtgtg 136  Q
    || || |||||||||||    
T  48409136 tatttcgtattggtgtg 48409152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 25766896 - 25766757
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| | |||| |||||||||||||| |||||||||||||||||| |||| | |||||||||| ||||||||||||| ||||||||||||||||     
T  25766896 ttcactttgatacctagattagatctaggtgctgttattgttgattattgcttgcgctcactttgttattggttactacttttctttgctccacacatca 25766797  T
Q  120 tactttgtattggtgtggttttgagatcggaatacacaaca 160  Q
    || || |||||||||| | ||||||| |||||| |||||||    
T  25766796 tatttcgtattggtgt-gatttgagaccggaattcacaaca 25766757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 24 - 160
Target Start/End: Original strand, 29991286 - 29991422
Alignment:
Q  24 ctttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatcttact 123  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||  |||  | ||||||| || ||||||||||||| |||||||||||||||| || |    
T  29991286 ctttgattcctatattagatctaggtgttgttattgttgattattacttgtgctcactttgatattggttactacttttctttgctccacacatcatagt 29991385  T
Q  124 ttgtattggtgtggttttgagatcggaatacacaaca 160  Q
    |||||||||||||  ||||||| |||||| |||||||    
T  29991386 ttgtattggtgtgactttgagaacggaattcacaaca 29991422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 35854145 - 35854285
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||||| |||    ||||||| || ||||||||||||||||||||||||||||||     
T  35854145 ttcactttgcttcctagattagatctaggtgctgttattgttgattattgtttgtgttcactttgatattggttactactttcctttgctccacacatca 35854244  T
Q  120 tactttgtattggtgtggttttgagatcggaatacacaaca 160  Q
    || |||||||| ||||| ||||||||  ||||| |||||||    
T  35854245 tagtttgtatttgtgtgattttgagactggaattcacaaca 35854285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 23 - 144
Target Start/End: Original strand, 23555273 - 23555395
Alignment:
Q  23 actttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatcttac 122  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||| |||    ||||||| || |||||||||||||||||||||||||||||| ||     
T  23555273 actttgattcctagattagatctaggtgttgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgctccacacatcatag 23555372  T
Q  123 tttgtattggtgtg-gttttgag 144  Q
    |||||||||||||| ||||||||    
T  23555373 tttgtattggtgtgagttttgag 23555395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 25616084 - 25616208
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||| | |||||| ||||||||||||||||||||||||||||||||| |||    ||||||| || |||||||||||||||||||||||| |||||     
T  25616084 ttcacttcgattcctagattagatctaggtgttgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgctccatacatca 25616183  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || |||||||||||||| |||||||    
T  25616184 tagtttgtattggtgtgattttgag 25616208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 27348046 - 27348170
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||||| |||    ||||||| || ||||| ||||||||||||||||||||||||     
T  27348046 ttcactttgattcctagattagatctaggtgctgttattgttgattattgtttgtgttcactttgatattggttgctactttcctttgctccacacatca 27348145  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || |||||||| ||||| |||||||    
T  27348146 taatttgtatttgtgtgattttgag 27348170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 48489660 - 48489784
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||| |      ||||||| || ||||||||||||||||||||||||||||||     
T  48489660 ttcactttgattcctagattagatctaggtgttgttattgttgattattgctcatgttcactttgatattggttactactttcctttgctccacacatca 48489759  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || || ||||||||||| |||||||    
T  48489760 tagttggtattggtgtgattttgag 48489784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 18126875 - 18127000
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||||||||||||||| |||||||||| |||    ||||||| || || ||||||||||||||| |||||||||||     
T  18126875 ttcactttgattcctagattagatctaggtgttgttattcttgattattgcttgtgttcactttgatattgattactactttcctttactccacacatca 18126974  T
Q  120 tactttgtattggtgtg-gttttgag 144  Q
    || |||||||||||||| ||||||||    
T  18126975 tagtttgtattggtgtgagttttgag 18127000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 43864473 - 43864598
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||||| |||    ||||||| || || |||| |||||||||| |||||||||||     
T  43864473 ttcactttgattcctagattagatctaggtgctgttattgttgattattgcttgtgttcactttgatattgattaccactttcctttactccacacatca 43864572  T
Q  120 tactttgtattggtgtg-gttttgag 144  Q
    || |||||||||||||| ||||||||    
T  43864573 tagtttgtattggtgtgagttttgag 43864598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 495926 - 495803
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||||||||||||||||||| |||||| |||     |||||| || |||||||||||||||||||||||||| |||     
T  495926 ttcactttgattcctagattagatctaggtgttgttattgttg-ttattgtttgtgtttactttgatattggttactactttcctttgctccacatatca 495828  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || |||||||| ||||| |||||||    
T  495827 taatttgtattagtgtgattttgag 495803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 27 - 142
Target Start/End: Original strand, 24790240 - 24790355
Alignment:
Q  27 tgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttag-tggttactactttcctttgctccacacatcttacttt 125  Q
    ||||||||| |||||||||||||| |||| ||||||||||||  |||||| ||||||||| | ||||||| ||||||| |||||||||||||| ||||||    
T  24790240 tgtttcctagattagatctaggtggtgtt-ttgttgattattacttgcacgcactttgtttggtggttaccactttccgttgctccacacatcatacttt 24790338  T
Q  126 gtattggtgtggttttg 142  Q
    | ||||||||| |||||    
T  24790339 gcattggtgtgtttttg 24790355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 41648952 - 41648829
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||||||| || |||||||| |||||| |||    ||||||| || | ||||||||||||||||||||||||||||     
T  41648952 ttcactttgattcctagattagatctaggtgctgctattgttg-ttattgcttgtgttcactttgatattagttactactttcctttgctccacacatca 41648854  T
Q  120 tactttgtattggtgtggttttgag 144  Q
    || |||||||||||||| |||||||    
T  41648853 tagtttgtattggtgtgattttgag 41648829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 47676075 - 47675960
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| |||||||||||||||||||||| ||| || ||| |||    ||||||| || ||||||||||||||||||||||||||||||     
T  47676075 ttcactttgattactagattagatctaggtgttgttattattg-ttgttgcttgtgttcactttgatattggttactactttcctttgctccacacatca 47675977  T
Q  120 tactttgtattggtgtg 136  Q
    || ||||||||||||||    
T  47675976 tagtttgtattggtgtg 47675960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 48491805 - 48491944
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    |||| |||| |||||| |||||||||||| |||||||||||||||||||| |||    ||||||| || |||||||||||||||||| |||| |||||      
T  48491805 ttcattttgattcctatattagatctaggcgttgttattgttgattattgcttgtgttcactttgatattggttactactttcctttactccgcacatta 48491904  T
Q  120 tactttgtattggtgtggttttgagatcggaatacacaaca 160  Q
    || || ||||||||||| |||||| ||| |||| |||||||    
T  48491905 tagttggtattggtgtgattttga-atccgaattcacaaca 48491944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 26417545 - 26417686
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| ||| || |||| ||||||||| |||||||||||||||||| |||     |||||| || |||||||||||||||||| ||||||| |||     
T  26417545 ttcactttgattcatagattatatctaggtgctgttattgttgattattgcttgtggttactttgatattggttactactttcctttactccacatatca 26417644  T
Q  120 tactttgtattggtgtg-gttttgagatcggaatacacaacat 161  Q
    || |||||||||||||| |||||||| || |||| ||||||||    
T  26417645 tagtttgtattggtgtgagttttgag-tccgaattcacaacat 26417686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 4586390 - 4586506
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| ||||||||||||||||||||||||| ||||||| |||    |||||||  | ||||||| ||||||||||||||||||||||     
T  4586390 ttcactttgattactagattagatctaggtgttgttattgtttattattgcttgtgttcactttgaaattggttaccactttcctttgctccacacatca 4586489  T
Q  120 tactttgtattggtgtg 136  Q
    || |||  |||||||||    
T  4586490 tagtttacattggtgtg 4586506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 41317377 - 41317262
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| |||||||||||||||||||||| ||| || ||| |||    ||||||| || |||||||||||||||||||||||| |||||     
T  41317377 ttcactttgattactagattagatctaggtgttgttattattg-ttgttgcttgtgttcactttgatattggttactactttcctttgctccaaacatca 41317279  T
Q  120 tactttgtattggtgtg 136  Q
    || ||||||||||||||    
T  41317278 tagtttgtattggtgtg 41317262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 43504090 - 43503947
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccac--tttgttagtggttactactttcctttgctccacacat 117  Q
    ||||||||| |||||| ||||||||||| |||| ||   ||||||||||| |||||| |||  |||||| |||||||| ||| |||||||||||||||||    
T  43504090 ttcactttgattcctagattagatctagctgttttt---gttgattattgcttgcacacacactttgttggtggttaccactctcctttgctccacacat 43503994  T
Q  118 cttactttgtattggtgtg----gttttgagatcggaatacacaaca 160  Q
    | || || |||||||||||    | |||||||||||||| |||||||    
T  43503993 catatttcgtattggtgtgacacgatttgagatcggaattcacaaca 43503947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 19502408 - 19502532
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| |||||||||||||||||||||| ||| || ||| ||| |   ||||||  | ||||||||||||||||||||||||||||||     
T  19502408 ttcactttgattactagattagatctaggtgttgttattattg-ttgttgcttgtatttactttgaaattggttactactttcctttgctccacacatca 19502506  T
Q  120 tactttgtattggtgtg-gttttgag 144  Q
    || |||||||| ||||| ||||||||    
T  19502507 tagtttgtattagtgtgagttttgag 19502532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 20344134 - 20344250
Alignment:
Q  26 ttgtttcctaaattagatctaggtgttg--ttattgttgattattgattgcacccactttgttag-tggttactactttcctttgctccacacatcttac 122  Q
    |||||||||| |||||||||||||| ||  || |||| |||| ||| |||||| ||||||||| | ||||||| ||| |||||||||||||||||| | |    
T  20344134 ttgtttcctagattagatctaggtgctggttttttgtcgattgttgcttgcacacactttgtttggtggttaccactctcctttgctccacacatcattc 20344233  T
Q  123 tttgtattggtgtggtt 139  Q
    |||| ||||||||||||    
T  20344234 tttgcattggtgtggtt 20344250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 31732908 - 31732783
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| ||||||||||   |||||||||||||||||||| |||    |||||||  | |||||||||||||| |||||||||||||||     
T  31732908 ttcactttgattactagattagatctaaaggttgttattgttgattattgcttgtgttcactttgaaattggttactactttcatttgctccacacatca 31732809  T
Q  120 tactttgtattggtgtg-gttttgag 144  Q
    || |||||| ||||||| ||||||||    
T  31732808 tagtttgtactggtgtgagttttgag 31732783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 47673883 - 47673768
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| |||||||||||||||||||||| ||| || ||| |||    ||||||| || |||||||||||||| |||| ||||||||||     
T  47673883 ttcactttgattactagattagatctaggtgttgttattattg-ttgttgtttgtgttcactttgatattggttactactttcttttgttccacacatca 47673785  T
Q  120 tactttgtattggtgtg 136  Q
    || ||||||||||||||    
T  47673784 tagtttgtattggtgtg 47673768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 1113882 - 1114022
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    |||| |||| |||||| |||||||||||||||| ||||||||| |||||| |||     |||||| || | ||||| ||||||||||||||||||||||     
T  1113882 ttcattttgattcctagattagatctaggtgttattattgttg-ttattgcttgtgtttactttgatattagttaccactttcctttgctccacacatca 1113980  T
Q  120 tactttgtattggtgtg-gttttgagatcggaatacacaacat 161  Q
    || ||||||||| |||| |||||||  ||||||| ||||||||    
T  1113981 tagtttgtattgatgtgagttttga-ttcggaattcacaacat 1114022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 14069772 - 14069648
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| |||||||||||||||||||||| || ||| ||| |||     ||||||  | | ||||||||||||||||||||||||||||     
T  14069772 ttcactttgattactagattagatctaggtgttgttattatt-attgttgcttgtgtttactttgaaattagttactactttcctttgctccacacatca 14069674  T
Q  120 tactttgtattggtgtg-gttttgag 144  Q
    || |||||||||||||| ||||||||    
T  14069673 tagtttgtattggtgtgagttttgag 14069648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 14379800 - 14379676
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| || ||| |||||||||||||||||||||| || ||| ||| |||     ||||||  | | ||||||||||||||||||||||||||||     
T  14379800 ttcactttgattactagattagatctaggtgttgttattatt-attgttgcttgtgtttactttgaaattagttactactttcctttgctccacacatca 14379702  T
Q  120 tactttgtattggtgtg-gttttgag 144  Q
    || |||||||||||||| ||||||||    
T  14379701 tagtttgtattggtgtgagttttgag 14379676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 40 - 144
Target Start/End: Original strand, 8153587 - 8153690
Alignment:
Q  40 agatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtggtt 139  Q
    ||||||||||||||||||| ||| || ||| |||  | ||||||| || || |||||||||||||||||||||| |||| || |||||||| ||||| ||    
T  8153587 agatctaggtgttgttattattg-ttgttgcttgtgctcactttgatattgattactactttcctttgctccacgcatcatagtttgtattagtgtgatt 8153685  T
Q  140 ttgag 144  Q
    |||||    
T  8153686 ttgag 8153690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 38671093 - 38671040
Alignment:
Q  91 gttactactttcctttgctccacacatcttactttgtattggtgtggttttgag 144  Q
    ||||||| |||||||||||||||||||| || |||||||||||||| |||||||    
T  38671093 gttactattttcctttgctccacacatcatagtttgtattggtgtgattttgag 38671040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 36146291 - 36146227
Alignment:
Q  80 ctttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtggttttgag 144  Q
    ||||| || |||||||||||||||||||||||||||||| || |||||||| ||||  |||||||    
T  36146291 ctttgatattggttactactttcctttgctccacacatcatagtttgtatttgtgtaattttgag 36146227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 31105335 - 31105224
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| ||||||||| ||||||||||||||||    ||| |||     |||||| || || ||||||||||||||| |||||||||||     
T  31105335 ttcactttgattcctagattagatcttggtgttgttattgttg----ttgcttgtgtttactttgatattgattactactttcctttactccacacatca 31105240  T
Q  120 tactttgtattggtgtg 136  Q
    || ||| ||||||||||    
T  31105239 tagttt-tattggtgtg 31105224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 31519120 - 31519158
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttatt 58  Q
    ||||||||| |||||| ||||||||||||||||||||||    
T  31519120 ttcactttgattcctagattagatctaggtgttgttatt 31519158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 118
Target Start/End: Original strand, 23344263 - 23344292
Alignment:
Q  89 tggttactactttcctttgctccacacatc 118  Q
    ||||||||||||||||||||||||||||||    
T  23344263 tggttactactttcctttgctccacacatc 23344292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 434763 - 434903
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||||||||| |  ||||||  || ||||||||||||||||||||||||||||||     
T  434763 ttcactttgattcctagattagatctaggtgctgttattgttgattattgattgaaaacactttaataatggttactactttcctttgctccacacatca 434862  T
Q  120 tactttgtattggtgtggttttgagatcggaatacacaaca 160  Q
    || || |||||||||||  ||||||| |||||| |||||||    
T  434863 tagttcgtattggtgtgactttgagaacggaattcacaaca 434903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1519 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: scaffold1519
Description:

Target: scaffold1519; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 1145 - 1285
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| | |||| |||||||||||||| |||||||||||||||||| |||||  ||| |||| | ||||||||||| ||||||| ||||||||||     
T  1145 ttcactttgatacctagattagatctaggtggtgttattgttgattattgcttgcattcacattgtcattggttactactatcctttgttccacacatca 1244  T
Q  120 tactttgtattggtgtggttttgagatcggaatacacaaca 160  Q
    || || |||||||||||  ||||||| |||||| |||||||    
T  1245 tagttcgtattggtgtgactttgagaccggaattcacaaca 1285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 114832 - 114955
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| ||||||| |||||||||||||||||||||||||||||    ||||||| || |||||| |||||||||||||||||||||||     
T  114832 ttcactttgattcctagattagatataggtgttgttattgttgattattgattgtgttcactttgatattggttattactttcctttgctccacacatca 114931  T
Q  120 ta-ctttgtattggtgtggttttg 142  Q
    ||  |||||||||||||| |||||    
T  114932 tagttttgtattggtgtgattttg 114955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 20354 - 20241
Alignment:
Q  20 ttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 119  Q
    ||||||||| |||||| |||||||||||||| |||||||||| ||||||| |||    |||||||  | |||||||||| |||||||||||||||||||     
T  20354 ttcactttgattcctagattagatctaggtgctgttattgttaattattgcttgtgttcactttgacattggttactaccttcctttgctccacacatca 20255  T
Q  120 tactttgtattggt 133  Q
    || |||||||||||    
T  20254 tagtttgtattggt 20241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 148982 - 148927
Alignment:
Q  89 tggttactactttcctttgctccacacatcttactttgtattggtgtggttttgag 144  Q
    |||||||||||||||||||||||||||||  || ||||||||| |||| |||||||    
T  148982 tggttactactttcctttgctccacacattatagtttgtattgatgtgattttgag 148927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1668 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1668
Description:

Target: scaffold1668; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 1369 - 1325
Alignment:
Q  92 ttactactttcctttgctccacacatcttactttgtattggtgtg 136  Q
    ||||||||||||||||||||||||||| ||  |||||||||||||    
T  1369 ttactactttcctttgctccacacatcatagattgtattggtgtg 1325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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