View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13385_low_12 (Length: 234)

Name: NF13385_low_12
Description: NF13385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13385_low_12
NF13385_low_12
[»] chr1 (2 HSPs)
chr1 (1-145)||(5401122-5401266)
chr1 (201-234)||(12143230-12143263)
[»] chr7 (2 HSPs)
chr7 (201-234)||(8162662-8162695)
chr7 (202-234)||(30798319-30798351)
[»] chr8 (1 HSPs)
chr8 (201-234)||(1293347-1293380)
[»] chr5 (2 HSPs)
chr5 (201-234)||(8689730-8689763)
chr5 (201-234)||(27509839-27509872)
[»] chr4 (3 HSPs)
chr4 (201-234)||(33807730-33807763)
chr4 (202-234)||(25734174-25734206)
chr4 (202-234)||(37382004-37382036)
[»] chr2 (2 HSPs)
chr2 (201-234)||(34253032-34253065)
chr2 (202-234)||(3430575-3430607)
[»] scaffold0392 (1 HSPs)
scaffold0392 (202-234)||(419-451)
[»] chr3 (1 HSPs)
chr3 (202-234)||(34019598-34019630)


Alignment Details
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 5401266 - 5401122
Alignment:
Q  1 tgtccacttttttcctttcattttagacgacattgaacttgaaaattttactttcctaataatatggaatcttctttgtatgttgctgaaataaagtaca 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5401266 tgtccacttttttcctttcattttagatgacattgaacttgaaaattttactttcctaataatatggaatcttctttgtatgttgctgaaataaagtaca 5401167  T
Q  101 ttgcttaattttaagcaattaattatgatgagtaatcaaacccca 145  Q
    ||||||||||||||||||||||||||| | |||||||||||||||    
T  5401166 ttgcttaattttaagcaattaattatgctaagtaatcaaacccca 5401122  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 234
Target Start/End: Complemental strand, 12143263 - 12143230
Alignment:
Q  201 caaagtggtctttaagtttcaaaagtctcaaaca 234  Q
    |||||| |||||||||||||||||||||||||||    
T  12143263 caaagtcgtctttaagtttcaaaagtctcaaaca 12143230  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 201 - 234
Target Start/End: Original strand, 8162662 - 8162695
Alignment:
Q  201 caaagtggtctttaagtttcaaaagtctcaaaca 234  Q
    ||||||||||||||||||||||||||||||||||    
T  8162662 caaagtggtctttaagtttcaaaagtctcaaaca 8162695  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 234
Target Start/End: Original strand, 30798319 - 30798351
Alignment:
Q  202 aaagtggtctttaagtttcaaaagtctcaaaca 234  Q
    |||||||||||||||||||||||||| ||||||    
T  30798319 aaagtggtctttaagtttcaaaagtcccaaaca 30798351  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 234
Target Start/End: Original strand, 1293347 - 1293380
Alignment:
Q  201 caaagtggtctttaagtttcaaaagtctcaaaca 234  Q
    ||||||| ||||||||||||||||||||||||||    
T  1293347 caaagtgatctttaagtttcaaaagtctcaaaca 1293380  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 234
Target Start/End: Complemental strand, 8689763 - 8689730
Alignment:
Q  201 caaagtggtctttaagtttcaaaagtctcaaaca 234  Q
    ||||||||||||||||||||||||||| ||||||    
T  8689763 caaagtggtctttaagtttcaaaagtcccaaaca 8689730  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 234
Target Start/End: Original strand, 27509839 - 27509872
Alignment:
Q  201 caaagtggtctttaagtttcaaaagtctcaaaca 234  Q
    ||||||||||||||||||||||||||| ||||||    
T  27509839 caaagtggtctttaagtttcaaaagtcccaaaca 27509872  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 234
Target Start/End: Original strand, 33807730 - 33807763
Alignment:
Q  201 caaagtggtctttaagtttcaaaagtctcaaaca 234  Q
    |||||| |||||||||||||||||||||||||||    
T  33807730 caaagtcgtctttaagtttcaaaagtctcaaaca 33807763  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 234
Target Start/End: Original strand, 25734174 - 25734206
Alignment:
Q  202 aaagtggtctttaagtttcaaaagtctcaaaca 234  Q
    |||||||||||||||||| ||||||||||||||    
T  25734174 aaagtggtctttaagttttaaaagtctcaaaca 25734206  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 37382036 - 37382004
Alignment:
Q  202 aaagtggtctttaagtttcaaaagtctcaaaca 234  Q
    |||||||| ||||||||||||||||||||||||    
T  37382036 aaagtggtttttaagtttcaaaagtctcaaaca 37382004  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 234
Target Start/End: Original strand, 34253032 - 34253065
Alignment:
Q  201 caaagtggtctttaagtttcaaaagtctcaaaca 234  Q
    ||||||||||||||| ||||||||||||||||||    
T  34253032 caaagtggtctttaaatttcaaaagtctcaaaca 34253065  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 234
Target Start/End: Original strand, 3430575 - 3430607
Alignment:
Q  202 aaagtggtctttaagtttcaaaagtctcaaaca 234  Q
    |||||||||||||||||||||||||| ||||||    
T  3430575 aaagtggtctttaagtttcaaaagtcccaaaca 3430607  T

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Target: scaffold0392 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0392
Description:

Target: scaffold0392; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 451 - 419
Alignment:
Q  202 aaagtggtctttaagtttcaaaagtctcaaaca 234  Q
    |||||||||||||||||||||||||| ||||||    
T  451 aaagtggtctttaagtttcaaaagtcacaaaca 419  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 34019630 - 34019598
Alignment:
Q  202 aaagtggtctttaagtttcaaaagtctcaaaca 234  Q
    ||||||||| |||||||||||||||||||||||    
T  34019630 aaagtggtccttaagtttcaaaagtctcaaaca 34019598  T

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