View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13385_low_2 (Length: 549)
Name: NF13385_low_2
Description: NF13385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13385_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 179 - 544
Target Start/End: Complemental strand, 25589613 - 25589243
Alignment:
| Q |
179 |
attaaacaaacaaatcatgcaaataattgttcacgatttcgctcatatgtggtgaagacgaacacaaataacatcaaaagatacaacaatata-----ta |
273 |
Q |
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| T |
25589613 |
attaaacaaacaaatcatgcaaataattgttcacgatttcgcccat--gtggtgaagacgaacacaaataacatcaaaacatacaacaatataatatata |
25589516 |
T |
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| Q |
274 |
ttgaatattttatttcatttgacaaatcaatacatattgaattaatcactatataatataatacatctctg--agcttaactcagttggtaaggtcacag |
371 |
Q |
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| T |
25589515 |
ttgaatattttatttcatttgacaaatcaatacatattgaattaatcactatataatataatacatctctgtgagtttaattcagttggtaaaaacactg |
25589416 |
T |
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| Q |
372 |
cataatatatgtaaagacaaaactatcgaatcaataccttctttctccgctccgtctcattgatgtctctgattcgtgtagttcttcctagcttcttaga |
471 |
Q |
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| T |
25589415 |
cataatatatgtaaggacaaaattatctaatcaataccttctttttccgctcggtctcattgatgtctctaattcgtgtaattcttcctagcttcttaga |
25589316 |
T |
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| Q |
472 |
aaaccataacaaacatccacttgatctttgggtctttgcttcaatcatgctattcttgggtccctttgcttct |
544 |
Q |
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| T |
25589315 |
aaaccaaaacaaacatccacttgatctttgggtctttgcttcaatcatgctattcttgggtccctttgcttct |
25589243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 419 - 544
Target Start/End: Complemental strand, 25565117 - 25564992
Alignment:
| Q |
419 |
cgctccgtctcattgatgtctctgattcgtgtagttcttcctagcttcttagaaaaccataacaaacatccacttgatctttgggtctttgcttcaatca |
518 |
Q |
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| T |
25565117 |
cgctccttctcattgatatctctaattcgtgtagttcttcttaacttcttagaaaaccaaaagaaacatttacttgatctttcgtccttcgatccaatcg |
25565018 |
T |
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| Q |
519 |
tgctattcttgggtccctttgcttct |
544 |
Q |
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| T |
25565017 |
cgctattcttgggtccctttgcttct |
25564992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 236 - 318
Target Start/End: Complemental strand, 25567520 - 25567439
Alignment:
| Q |
236 |
acgaacacaaataacatcaaaagatacaacaatatatattgaatattttatttcatttgacaaatcaatacatattgaattaa |
318 |
Q |
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| T |
25567520 |
acgaacacaaataacataaaaacatacgacaatccatattgaatattt-attttatttaacaaatcaatacatattgaattaa |
25567439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 25567667 - 25567617
Alignment:
| Q |
56 |
ttagttcgactgtgattaagcaaaccctcggttgagcgtgtgaaactagataa |
108 |
Q |
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| T |
25567667 |
ttagtttgagtgtgattaagcaaagcctcggttgagc--gtgaaactagataa |
25567617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 343 - 387
Target Start/End: Complemental strand, 34595996 - 34595952
Alignment:
| Q |
343 |
tgagcttaactcagttggtaaggtcacagcataatatatgtaaag |
387 |
Q |
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| T |
34595996 |
tgagtttaactcagttggtaaggacaatgcataatatatgtaaag |
34595952 |
T |
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