View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13385_low_3 (Length: 391)
Name: NF13385_low_3
Description: NF13385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13385_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 39 - 380
Target Start/End: Complemental strand, 22684888 - 22684547
Alignment:
| Q |
39 |
gaaaacaaaattaatctccttgttccttttttcttgactttaaattcatgttttatcacatagatgacacattttaacaaatttatgtgttttgttttat |
138 |
Q |
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| T |
22684888 |
gaaatcaaaattaatctccttgttccttttttcttgactttaaattcatgttttatcacatagatgacacattttaacaaatttctgtgttttgttttat |
22684789 |
T |
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| Q |
139 |
ttataggttgtgactcctttggcaaaaattgccttaatattattgcctgttgcatcaagcatagaggaacttgtcgtcccttctcctaggctaagatgtt |
238 |
Q |
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| T |
22684788 |
ttataggttgtgactcctttggcaaaatttgccttaatattattgcctgttgcatcaagcatagaggaacttgtcgtcccttctcctaggctaagatgtt |
22684689 |
T |
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| Q |
239 |
atgctatgtctctttttatcagaacaactttagtgttttcaagtttatttgtggccctctcttttccatattttggtaagtattgtccatactattatta |
338 |
Q |
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| T |
22684688 |
atgctatgtctctttttattaaaacaactttagtgttttcaagtttatttgtggccctctcttttccatattttggtaagtattgtccatactattatta |
22684589 |
T |
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| Q |
339 |
ctacctttgtgcgttgctctattgcacttacacttctgatga |
380 |
Q |
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| T |
22684588 |
ctacctttgtgcgttgctctgttgcacttacacttctgatga |
22684547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 76 - 356
Target Start/End: Complemental strand, 22696146 - 22695870
Alignment:
| Q |
76 |
ctttaaattcatgttttatcacatagatgacacattttaacaaatttatgtgttttgttttatttataggttgtgactcctttggcaaaaattgccttaa |
175 |
Q |
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| T |
22696146 |
ctttaaattcatgttttatcacatagatgacaaattttaacaaatttctgtgttttattttacatataggttgtgactcctctggcaaaatatgccttaa |
22696047 |
T |
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| Q |
176 |
tattattgcctgttgcatcaagcatagaggaacttgtcgtcccttctcctaggctaagatgttatgctatgtctctttttatcagaacaactttagtgtt |
275 |
Q |
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| T |
22696046 |
cattattgcctattgcatcaagcatagaggaactt---gtcccttctcctaggctaagatgttatcctatgtctattctcatcagaacagctttagtggt |
22695950 |
T |
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| Q |
276 |
ttcaagtttatttgtggccctctcttttccatattttggtaagtattgtccatactattattactacctttgtgcgttgct |
356 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| ||||| |
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| T |
22695949 |
ttcaagtttagttgtggccctctcttttccatattttggtaagttttgt-cataccattattactacctttgtgcattgct |
22695870 |
T |
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