View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13385_low_4 (Length: 390)
Name: NF13385_low_4
Description: NF13385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13385_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 7e-62; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 5 - 153
Target Start/End: Complemental strand, 21373904 - 21373756
Alignment:
| Q |
5 |
gagtgagatgaacgatagaagaaaatttattcactttgcctcttgcgatattagcagaagacctgaatctaaatttttgaatattaactttaaacccaga |
104 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| | |
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| T |
21373904 |
gagtgaaatgaacgatagaagaaaatttattcactttgcctcttgcgatattagcagaagacatgaatctaaatttttgaatattaactttcaacccaaa |
21373805 |
T |
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| Q |
105 |
agcatagcaaaaactctctaacacctctttcactattctaggttgggag |
153 |
Q |
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| T |
21373804 |
agcatgacaaaaactctctaacacctctttcactattctagcttgggag |
21373756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 188 - 300
Target Start/End: Complemental strand, 21373726 - 21373614
Alignment:
| Q |
188 |
tgcttaaagtaattttgcctagaaagagctcaatgtgacgaatattgttgacaaagtcaaaattcattttgtatggtagattaaactttaaagcgaaatc |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21373726 |
tgcttaaagtaattttgcctagaaagagctcaatgtgacgaatattgttgacaaagtcaaaattcattttgtatggtagattaaactttaaagcgaaatc |
21373627 |
T |
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| Q |
288 |
tcatggttttaaa |
300 |
Q |
| |
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||||||||||||| |
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| T |
21373626 |
tcatggttttaaa |
21373614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 296 - 372
Target Start/End: Complemental strand, 21373093 - 21373017
Alignment:
| Q |
296 |
ttaaactttaaacaaataaagtggggcatataacttgtactactagtgggtaggagttgtatttggtggtgttgctg |
372 |
Q |
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| T |
21373093 |
ttaaactttaaacaaataaagtggggcatataacttgtactactagtgggtaggagttgtatttggtggtgttgctg |
21373017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 296 - 372
Target Start/End: Original strand, 21384465 - 21384540
Alignment:
| Q |
296 |
ttaaactttaaacaaa-taaagtggggcatataacttgtactactagtgggtaggagttgtatttggtggtgttgctg |
372 |
Q |
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| T |
21384465 |
ttaaactttaaacaaaataaagtggggcata--acttgtactactagtgggtaggagttgtatttggtggtgttgctg |
21384540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 36253104 - 36253228
Alignment:
| Q |
19 |
atagaagaaaatttattcactttgcctcttgcgatattagcagaagacctgaatctaaatttttgaatattaactttaaacccagaagcatagcaaaaac |
118 |
Q |
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||||||| |||||||||||||||| | | | ||||||| | |||| |||||||| ||||||||||||||||||| || |||||||||| ||||||| |
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| T |
36253104 |
atagaagcaaatttattcactttgtttttggaaatattaggattagacatgaatctagatttttgaatattaacttttaa-ccagaagcatgacaaaaac |
36253202 |
T |
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| Q |
119 |
tctctaacacctctttcactattcta |
144 |
Q |
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| |||| ||||||||||| ||||||| |
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| T |
36253203 |
tttctaccacctctttcaatattcta |
36253228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 9e-46; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 54873761 - 54873628
Alignment:
| Q |
12 |
atgaacgatagaagaaaatttattcactttgcctcttgcgatattagcagaagacctgaatctaaatttttgaatattaactttaaacccagaagcatag |
111 |
Q |
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|||||||||||||||||||||||||||||||| ||| | |||||||||||||||| |||||||| || |||||||||||||||| ||||||||||||| |
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| T |
54873761 |
atgaacgatagaagaaaatttattcactttgcttctagagatattagcagaagacatgaatctagatatttgaatattaactttcaacccagaagcatga |
54873662 |
T |
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| Q |
112 |
caaaaactctctaacacctctttcactattctag |
145 |
Q |
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|||||||||||||| ||||||||||||||||||| |
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| T |
54873661 |
caaaaactctctaatacctctttcactattctag |
54873628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 55429825 - 55429958
Alignment:
| Q |
12 |
atgaacgatagaagaaaatttattcactttgcctcttgcgatattagcagaagacctgaatctaaatttttgaatattaactttaaacccagaagcatag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| | |||||||||| |||| |||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
55429825 |
atgaacgatagaagaaaatttattcactttgcttctagagatattagcataagatatgaatctagatttttgaatattaacttttaacccagaagcatga |
55429924 |
T |
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| Q |
112 |
caaaaactctctaacacctctttcactattctag |
145 |
Q |
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|||||||||| ||| ||||||||||||||||||| |
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| T |
55429925 |
caaaaactctttaagacctctttcactattctag |
55429958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 40584010 - 40583947
Alignment:
| Q |
78 |
tttttgaatattaactttaaacccagaagcatagcaaaaactctctaacacctctttcactatt |
141 |
Q |
| |
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|||||||||||||||||| |||| |||||||| |||||||| ||||||| |||||||| |||| |
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| T |
40584010 |
tttttgaatattaacttttaaccgagaagcattacaaaaactatctaacatctctttcattatt |
40583947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 7020834 - 7020703
Alignment:
| Q |
12 |
atgaacgatagaagaaaatttattcactttgcctcttgcgatattagcagaagacctgaatctaaatttttgaatattaactttaaacccagaagcatag |
111 |
Q |
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|
||||||||||||||||||||||||||||||| |||| | |||||||||||||||| |||||||| |||| |||||||||||||| ||||||||||||| |
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| T |
7020834 |
atgaacgatagaagaaaatttattcactttgtctctggagatattagcagaagacatgaatctagatttctgaatattaactttcaacccagaagcatga |
7020735 |
T |
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| Q |
112 |
caaaaactctctaacacctctttcactattctag |
145 |
Q |
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||||||||||| ||||||||||||||||||||| |
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| T |
7020734 |
caaaaactctc--acacctctttcactattctag |
7020703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 15918936 - 15919070
Alignment:
| Q |
12 |
atgaacgatagaagaaaatttattcactttgcctcttgcgatattagcagaagacctgaatctaaatttttg-aatattaactttaaacccagaagcata |
110 |
Q |
| |
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||||| |||||||||||||||||||||||| ||| | |||||||||||||||| ||||| || |||||| |||||||||||| ||||||||||||| |
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| T |
15918936 |
atgaatgatagaagaaaatttattcactttttttctagagatattagcagaagacatgaatttagatttttttaatattaactttcaacccagaagcatg |
15919035 |
T |
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| Q |
111 |
gcaaaaactctctaacacctctttcactattctag |
145 |
Q |
| |
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||||||||||||||||||| |||||||||||||| |
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| T |
15919036 |
acaaaaactctctaacacctgtttcactattctag |
15919070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 37785267 - 37785400
Alignment:
| Q |
12 |
atgaacgatagaagaaaatttattcactttgcctcttgcgatattagcagaagacctgaatctaaatttttgaatattaactttaaacccagaagcatag |
111 |
Q |
| |
|
|||||| |||||| |||||| ||||||||| ||| | |||||||| | || || |||||||| ||||||||||||||||||| || |||||||||| |
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| T |
37785267 |
atgaacaatagaaacaaattttttcactttgtttctagagatattagtataaaacatgaatctagatttttgaatattaactttcaatccagaagcatga |
37785366 |
T |
|
| Q |
112 |
caaaaactctctaacacctctttcactattctag |
145 |
Q |
| |
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|||| |||| ||||||||||||||||||||||| |
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|
| T |
37785367 |
aaaaatctctttaacacctctttcactattctag |
37785400 |
T |
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