View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13385_low_5 (Length: 376)
Name: NF13385_low_5
Description: NF13385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13385_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 165 - 286
Target Start/End: Complemental strand, 4858608 - 4858487
Alignment:
| Q |
165 |
atactaagtaacctctcaaaagccttcaccaaatgcatcactttcccattttcaggtacactattccttgcttcttccattactttctctcttctccttt |
264 |
Q |
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| T |
4858608 |
atactaagtaacctctcaaaagccttcaccaaatgcatcactttcccattttcaggtacactattccttgcttcttccattactttctctcttctccttt |
4858509 |
T |
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| Q |
265 |
tcaccattgaactacaattacc |
286 |
Q |
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|||||||||||||||||||||| |
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| T |
4858508 |
tcaccattgaactacaattacc |
4858487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 4858760 - 4858675
Alignment:
| Q |
13 |
catcatcatcacaacaactcgaaacaacttcagattgttcattaccatccttaacaggttgttgaaattgcaatccaggtaatgcc |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4858760 |
catcatcatcacaacaactcgaaacaacttcagattgttcatcaccatccttaacaggttgttgaaattgcaatccaggtaatgcc |
4858675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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