View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13385_low_6 (Length: 350)
Name: NF13385_low_6
Description: NF13385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13385_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 8e-86; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 34241747 - 34241583
Alignment:
| Q |
17 |
gatgaagtataataacacagaatcaaaaactctaactccattttcatcctgggaaatccaaaacatgaatgaaatgctcatgctgctgcctgctagtgtt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34241747 |
gatgaagtataataacacagaatcaaaaactctaactccattttcatcctggaaaatccaaaacatgaatgaaatgctcatgctgctgcctgctagtgtt |
34241648 |
T |
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| Q |
117 |
ggactttctgggcatttcagtttgtgtacttgtaaaactcaattttgtactgattaaattagatg |
181 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34241647 |
ggactttctgggcatttcagtttgtgtacttgtaaaactcaattttgtactgattaaattagatg |
34241583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 226 - 350
Target Start/End: Complemental strand, 34241538 - 34241416
Alignment:
| Q |
226 |
ctagatcaaataagaatgagtcgatagattgtcacactcacatcaaaacttattttaaacagaaagtaaaaactaacacacaatagagaaaataaccaga |
325 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34241538 |
ctagatcaaataagaatgagtcgatagattgtcaaactcacatcaaaacttattttaaacaga--gtaaaaactaacacacaatagagaaaataaccaga |
34241441 |
T |
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| Q |
326 |
ataataaaactatgacatttgcacc |
350 |
Q |
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||||||||||||||||||||||||| |
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| T |
34241440 |
ataataaaactatgacatttgcacc |
34241416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 250 - 350
Target Start/End: Complemental strand, 34233743 - 34233643
Alignment:
| Q |
250 |
tagattgtcacactcacatcaaaacttattttaaacagaaagtaaaaactaacacaca--atagagaaaataaccagaataataaaactatgacatttgc |
347 |
Q |
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|||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34233743 |
tagattgttacactcacaccaaaacttattttaaacaga--gtaaaaactaacacacacaatagagaaaataaccagaataataaaactatgacatttgc |
34233646 |
T |
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| Q |
348 |
acc |
350 |
Q |
| |
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||| |
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| T |
34233645 |
acc |
34233643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 271 - 350
Target Start/End: Original strand, 42116871 - 42116951
Alignment:
| Q |
271 |
aaacttattttaaacagaaagtaaaa-actaacacacaatagagaaaataaccagaataataaaactatgacatttgcacc |
350 |
Q |
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||||||||||||| ||||||||||| ||||||||||||||||||||||||| | || ||||||||||||||||||||||| |
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| T |
42116871 |
aaacttattttaagaagaaagtaaaaaactaacacacaatagagaaaataacaacaacaataaaactatgacatttgcacc |
42116951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 293 - 350
Target Start/End: Original strand, 42128052 - 42128109
Alignment:
| Q |
293 |
aaaaactaacacacaatagagaaaataaccagaataataaaactatgacatttgcacc |
350 |
Q |
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||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
42128052 |
aaaaactaatacacaatagagaaaataactagaacaataaaactatgacatttgcacc |
42128109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 251 - 350
Target Start/End: Original strand, 42122614 - 42122714
Alignment:
| Q |
251 |
agattgtcacactcaca-tcaaaacttattttaaacagaaagtaaaaa-ctaacacacaatagagaaaataaccagaataataaaactatgacatttgca |
348 |
Q |
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||||||||||||||| | |||| | ||||||||||||||||||||||| | ||||||||| ||| ||| |||| | || ||||||||||||||||||||| |
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| T |
42122614 |
agattgtcacactcaaaatcaaga-ttattttaaacagaaagtaaaaaaccaacacacaacagataaagtaactacaacaataaaactatgacatttgca |
42122712 |
T |
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| Q |
349 |
cc |
350 |
Q |
| |
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|| |
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| T |
42122713 |
cc |
42122714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 34234388 - 34234338
Alignment:
| Q |
131 |
tttcagtttgtgtacttgtaaaactcaattttgtactgattaaattagatg |
181 |
Q |
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|||| ||||||||||||| |||||||||||||||||| || | |||||||| |
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| T |
34234388 |
tttctgtttgtgtacttgcaaaactcaattttgtactaataagattagatg |
34234338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 283 - 345
Target Start/End: Complemental strand, 32682557 - 32682495
Alignment:
| Q |
283 |
aacagaaagtaaaaactaacacacaatagagaaaataaccagaataataaaactatgacattt |
345 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| || || ||||| |||||||||||| |
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| T |
32682557 |
aacagaaagtaaaaactaacacacaatagagaaaataagcacaacaataagactatgacattt |
32682495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 251 - 323
Target Start/End: Complemental strand, 11995353 - 11995282
Alignment:
| Q |
251 |
agattgtcacactcacatcaaaacttattttaaacagaaagtaaaaactaacacacaatagagaaaataacca |
323 |
Q |
| |
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||||| ||||||||| |||||| ||||||| ||| | || ||||||||||||||||||||||||||||||||| |
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| T |
11995353 |
agattatcacactcagatcaaa-cttatttaaaatacaaggtaaaaactaacacacaatagagaaaataacca |
11995282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 323
Target Start/End: Original strand, 12247609 - 12247646
Alignment:
| Q |
286 |
agaaagtaaaaactaacacacaatagagaaaataacca |
323 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |
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| T |
12247609 |
agaaggtaaaaactaacacacaatagagaaaataacca |
12247646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 350
Target Start/End: Original strand, 11117294 - 11117371
Alignment:
| Q |
274 |
cttattttaaacagaaagt-aaaaactaacacacaatagagaaaataaccagaataataaaactatgacatttgcacc |
350 |
Q |
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|
||||||||||||||||||| |||||| ||||| ||| |||||| |||| | | ||||||||||||||||||||||| |
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| T |
11117294 |
cttattttaaacagaaagtaaaaaaccaacacccaacggagaaagtaactacgacaataaaactatgacatttgcacc |
11117371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 30021068 - 30021105
Alignment:
| Q |
274 |
cttattttaaacagaaagtaaaaactaacacacaatag |
311 |
Q |
| |
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||||||||||| |||| ||||||||||||||||||||| |
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| T |
30021068 |
cttattttaaatagaaggtaaaaactaacacacaatag |
30021105 |
T |
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