View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13385_low_8 (Length: 347)
Name: NF13385_low_8
Description: NF13385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13385_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 4916585 - 4916917
Alignment:
| Q |
1 |
ctccttgcttgccagtcaccttgattctctctctgatcatgataatattgtgaaaatatatatgtacttatttgaacagaactggaaacctacggagaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4916585 |
ctccttgcttgccagtcaccttgattctctctctgatcatgataatattgtgaaaatatatatgtacttatttgaacagaactggaaacctaaggagaaa |
4916684 |
T |
|
| Q |
101 |
cctgcaaaaaagatttgggttctggatggaataaatggtggtaagtgggttgattctgaagaatgtatcatacatgaccctgctaaactttttgctggtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4916685 |
tctgcaaaaaagatttgggttctggatggaataaatggtggtaagtgggttgattctgaagaatgtatcatacatgaccctgctaaactttttgctggtt |
4916784 |
T |
|
| Q |
201 |
caaaattttattttcttgaagatatctatgatagtaatattcttgaatttttcaatgcaatattgaaagtcaagaacaagccgtcactagatgattatgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4916785 |
caaaattttattttcttgaagatatctatgatagtaatattcttgaatttttcaatgcaatattgaaagtcaagaacaagccgtcactagatgattatgt |
4916884 |
T |
|
| Q |
301 |
tgacctttggaatgattgggggagttcagtgaa |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
4916885 |
tgacctttggaatgattgggggagttcagtgaa |
4916917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 5 - 333
Target Start/End: Complemental strand, 2946512 - 2946190
Alignment:
| Q |
5 |
ttgcttgccagtcaccttgattctctctctgatcatgataatattgtgaaaatatatatgtacttatttgaacagaactggaaacctacggagaaacctg |
104 |
Q |
| |
|
|||||||||| ||||||||| || || ||||||||||| | ||||||||||||||| | |||||||| |||||| ||||||||||| ||||| | ||| |
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|
| T |
2946512 |
ttgcttgccaatcaccttgagtccctatctgatcatgacagtattgtgaaaatatacaagtacttatgtgaacacaactggaaaccggaggagacagctg |
2946413 |
T |
|
| Q |
105 |
caaaaaagatttgggttctggatggaataaatggtggtaagtgggttgattctgaagaatgtatcatacatgaccctgctaaactttttgctggttcaaa |
204 |
Q |
| |
|
|||||||| ||||| ||||||||| ||| || |||||||||||||||||||||||||||| |||||||| ||||| |||||||||| ||||||||| |
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|
| T |
2946412 |
caaaaaaggtttggattctggatgcaattaaaagtggtaagtgggttgattctgaagaatgcatcatacacgacccacctaaactttt---tggttcaaa |
2946316 |
T |
|
| Q |
205 |
attttattttcttgaagatatctatgatagtaatattcttgaatttttcaatgcaatattgaaagtcaagaacaagccgtcactagatgattatgttgac |
304 |
Q |
| |
|
|| |||| ||||||||||| |||||||||| ||||||||| ||||||||||| |||| |||||||||| ||||| ||||||||||||||||||||| |
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|
| T |
2946315 |
atattatgttcttgaagatctctatgatagagatattcttgtttttttcaatgc---attggaagtcaagaagaagccctcactagatgattatgttgac |
2946219 |
T |
|
| Q |
305 |
ctttggaatgattgggggagttcagtgaa |
333 |
Q |
| |
|
||||||||||||||||| ||||||||||| |
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|
| T |
2946218 |
ctttggaatgattggggaagttcagtgaa |
2946190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 3012901 - 3013233
Alignment:
| Q |
1 |
ctccttgcttgccagtcaccttgattctctctctgatcatgataatattgtgaaaatatatatgtacttatttgaacagaactggaaacctacggagaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||| | ||| |||| | |||| |||||||||||| |||||| |
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|
| T |
3012901 |
ctccttgcttgccagtcaccttgactctctctctgatcatgataccattttgaaaatatacaagtatttatgtcaacacaactggaaacctgacgagaaa |
3013000 |
T |
|
| Q |
101 |
cctgcaaaaaagatttgggttctggatggaataaatggtggtaagtgggttgattctgaagaatgtatcatacatgaccctgctaaactttttgctggtt |
200 |
Q |
| |
|
||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||| ||||| |
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|
| T |
3013001 |
gctgcaaaaaagatttggattcttgatggaattgtaggtggtaagtgggttgattctgaagaatgcatcgtacacgaccctgctaaactttt---tggtt |
3013097 |
T |
|
| Q |
201 |
caaaattttattttcttgaagatatctatgatagta---atattcttgaatttttcaa---tgcaatattgaaagtcaagaacaagccgtcactagatga |
294 |
Q |
| |
|
|||| ||||| || | |||||||||||||||| | |||||||| |||||| | ||||| || | ||||||| ||||| || ||||| || |
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|
| T |
3013098 |
caaagttttacgttttagaagatatctatgataacaacgatattcttctttttttctactttgcaa---tggatatcaagaataagccctcgctagaaga |
3013194 |
T |
|
| Q |
295 |
ttatgttgacctttggaatgattgggggagttcagtgaa |
333 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
3013195 |
ttatgttgacctttggaatgattgggggaattcaatgaa |
3013233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 2929878 - 2929651
Alignment:
| Q |
1 |
ctccttgcttgccagtcaccttgattctctctctgatcatgataatattgtgaaaatatatatgtacttatttgaacagaactggaaacctacggagaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| | || |||| | || | ||||||||| || |||||| |
|
|
| T |
2929878 |
ctccttgcttgccagtcaccttgatactctctctgatcatgataccattgtgaaaatatacaagtttttatatcaatacaactggaaagctgaggagaat |
2929779 |
T |
|
| Q |
101 |
cctgcaaaaaagatttgggttctggatggaataaatggtggtaagtgggttgattctgaagaatgtatcatacatgaccctgctaaactttttgctggtt |
200 |
Q |
| |
|
||||||| ||| ||||| |||| |||||||| || |||||||||| ||||||||| ||||||| || ||||||||||||| |||||||| ||||| |
|
|
| T |
2929778 |
gctgcaaagaaggtttggattcttgatggaattaaaggtggtaagttcgttgattctaaagaatgcgtcttacatgaccctgccaaactttt---tggtt |
2929682 |
T |
|
| Q |
201 |
caaaattttattttcttgaagatatctatga |
231 |
Q |
| |
|
|||| |||||| |||| |||||||||||||| |
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|
| T |
2929681 |
caaagttttatgttctagaagatatctatga |
2929651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 232
Target Start/End: Complemental strand, 37795096 - 37795022
Alignment:
| Q |
155 |
tctgaagaatgtatcatacatgaccctgctaaactttttgctggttcaaaattttattttcttgaagatatctatgat |
232 |
Q |
| |
|
||||||||||| |||||||||||||||| ||| ||||| ||||| |||||| ||| |||||||||||||||||||| |
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|
| T |
37795096 |
tctgaagaatgcatcatacatgaccctgataagctttt---tggtttaaaattctatgttcttgaagatatctatgat |
37795022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 2929594 - 2929558
Alignment:
| Q |
288 |
tagatgattatgttgacctttggaatgattgggggag |
324 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
2929594 |
tagaagattatgttgacctctggaatgattgggggag |
2929558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 37794970 - 37794926
Alignment:
| Q |
284 |
tcactagatgattatgttgacctttggaatgattgggggagttca |
328 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| |||| ||||||| |
|
|
| T |
37794970 |
tcacttgatgattatgttgatctttggaatgaatgggagagttca |
37794926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 17 - 328
Target Start/End: Original strand, 1507250 - 1507561
Alignment:
| Q |
17 |
caccttgattctctctctgatcatgataatattgtgaaaatatatatgtacttatttgaacagaactggaaacctacggagaaacctgcaaaaaagattt |
116 |
Q |
| |
|
|||||| | |||||||||||||||| || |||||||||||||||| |||||||||||||| || ||||||||| | ||| | ||||| ||||||| |
|
|
| T |
1507250 |
caccttaactctctctctgatcatggtaccattgtgaaaatatataattacttatttgaacacaattggaaacctgagaagagagaggcaaacaagattt |
1507349 |
T |
|
| Q |
117 |
gggttctggatgga-ataaa--tggtggtaagtgggttgattctgaagaatgtatcatacatgaccctgctaaactttttgctggttcaaaattttattt |
213 |
Q |
| |
|
|| |||| |||||| ||||| |||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| ||||||||||||||| | |
|
|
| T |
1507350 |
ggattcttgatggagataaaggtggtggtaagtgggttgattctgaggaatgtgtcatacacgaccctgctaaactttt---cggttcaaaattttatat |
1507446 |
T |
|
| Q |
214 |
tcttgaagatatctatgatagtaatattcttgaatttttcaatgcaatattgaaagtcaagaacaagccgtcactagatgattatgttgacctttggaat |
313 |
Q |
| |
|
||||||||||||||||||| | |||||||||| ||||| || | || |||||||||||||||| |||||||| || |||||||||||||||||| |
|
|
| T |
1507447 |
tcttgaagatatctatgatggcaatattcttgtttttttgtatcttgcaatggaagtcaagaacaagccctcactagaagactatgttgacctttggaat |
1507546 |
T |
|
| Q |
314 |
gattgggggagttca |
328 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
1507547 |
gattgggggaattca |
1507561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 155 - 234
Target Start/End: Complemental strand, 28024109 - 28024033
Alignment:
| Q |
155 |
tctgaagaatgtatcatacatgaccctgctaaactttttgctggttcaaaattttattttcttgaagatatctatgatag |
234 |
Q |
| |
|
||||||||||| |||||||||||||||| ||| ||||| ||||| |||||| ||| |||||||||||||||||||||| |
|
|
| T |
28024109 |
tctgaagaatgcatcatacatgaccctgataagctttt---tggtttaaaattctatgttcttgaagatatctatgatag |
28024033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 28023983 - 28023939
Alignment:
| Q |
284 |
tcactagatgattatgttgacctttggaatgattgggggagttca |
328 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| |||| ||||||| |
|
|
| T |
28023983 |
tcacttgatgattatgttgatctttggaatgaatgggagagttca |
28023939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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