View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13385_low_9 (Length: 344)

Name: NF13385_low_9
Description: NF13385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13385_low_9
NF13385_low_9
[»] chr3 (14 HSPs)
chr3 (1-342)||(2686379-2686720)
chr3 (1-344)||(2678463-2678809)
chr3 (4-118)||(3754470-3754584)
chr3 (4-118)||(4158014-4158128)
chr3 (47-118)||(4142247-4142318)
chr3 (4-118)||(3745878-3745992)
chr3 (146-261)||(13479308-13479423)
chr3 (231-336)||(9496727-9496832)
chr3 (206-266)||(3754319-3754379)
chr3 (146-266)||(7432263-7432383)
chr3 (231-266)||(4158244-4158279)
chr3 (4-118)||(2441885-2441999)
chr3 (206-266)||(4142409-4142469)
chr3 (87-123)||(12132950-12132986)
[»] chr7 (2 HSPs)
chr7 (4-118)||(1078245-1078359)
chr7 (146-269)||(1078390-1078513)
[»] chr5 (2 HSPs)
chr5 (5-118)||(11081680-11081793)
chr5 (41-118)||(2067174-2067251)


Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 2686379 - 2686720
Alignment:
Q  1 caagcacaaacaatccctcaaaacacccaaggtaagcatgttacagacatctacccctccataactaggaggggatatcttttgataagactcttttgcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2686379 caagcacaaacaatccctcaaaacacccaaggtaagcatgttacagacatctacccctccataactaggaggggatatcttttgataagactcttttgcc 2686478  T
Q  101 aaatcaaaagaaacaatagaacgggtacatggatggaattgtctggaggccaaccaattaatagtgccactgacaaattcacctgatcttgcaacaggga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2686479 aaatcaaaagaaacaatagaacgggtacatggatggaattgtctggaggccaaccaattaatagtgccactgacaaatttacctgatcttgcaacaggga 2686578  T
Q  201 aaacaccaaaaggaaactcatggatgtttttccaaatattagaacccaaagtatgaacctttacttcagattggagaactcaattatcactacctgtact 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||    
T  2686579 aaacaccaaaaggaaactcatggatgtttttccaaatattagaacccaaagtatgaacctttacttcagatttgtgaacccaattatcactacctgtact 2686678  T
Q  301 atagcgaataaggtagtgtaggacaacattcaccttgtaatt 342  Q
    ||  ||||||||||||||||| |||||| |||||||||||||    
T  2686679 atcacgaataaggtagtgtagaacaacaatcaccttgtaatt 2686720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 2678463 - 2678809
Alignment:
Q  1 caagcacaaacaatccctcaaaacacccaaggtaagcatgttacagacatctacccctccataactaggaggggatatcttttgataagactcttttgcc 100  Q
    ||||||||| |||||| ||||||||||||||||| |||| ||||  |||| | ||||||||||||||||||| |||| ||||||||||||||||||||||    
T  2678463 caagcacaagcaatccttcaaaacacccaaggtaggcattttacccacatttgcccctccataactaggaggtgatagcttttgataagactcttttgcc 2678562  T
Q  101 aaatcaaaagaaacaatagaacgggtacat---ggatggaattgtctggaggccaaccaattaatagtgccactgacaaattcacctgatcttgcaacag 197  Q
    |||||||||||||||||| || || |||||   |||| ||||| |||||| ||||||||||||||||||||||| |||||||  || |||||| ||| ||    
T  2678563 aaatcaaaagaaacaataaaatggttacatcccggatagaattttctggaagccaaccaattaatagtgccactaacaaattttcccgatcttccaaaag 2678662  T
Q  198 ggaaaacaccaaaaggaaactcatggatgtttttccaaatattagaacccaaagtatgaacctttacttcagattggagaactcaattatcactacctgt 297  Q
    |||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||| ||||||||||||| | | ||  ||||||||||||||||    
T  2678663 ggaaaacaccaaaaggaaactcttgaatgtttctccaaatattagaacccaaagtatgaacttttacttcagatttgcggaccaaattatcactacctgt 2678762  T
Q  298 actatagcgaataaggtagtgtaggacaacattcaccttgtaattat 344  Q
     ||||   |||||| ||||| ||| |||||| | |||||||||||||    
T  2678763 tctatcatgaataaagtagtctagaacaacaattaccttgtaattat 2678809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 4 - 118
Target Start/End: Complemental strand, 3754584 - 3754470
Alignment:
Q  4 gcacaaacaatccctcaaaacacccaaggtaagcatgttacagacatctacccctccataactaggaggggatatcttttgataagactcttttgccaaa 103  Q
    |||||| |||||||||||||||| ||| |    ||||| ||| ||||| ||||||||  || ||||||| || ||||||||||| ||||| |||||||||    
T  3754584 gcacaagcaatccctcaaaacactcaaagccgacatgtcacacacatccacccctcccaaattaggaggtgaaatcttttgatatgactcctttgccaaa 3754485  T
Q  104 tcaaaagaaacaata 118  Q
    |||||||||||||||    
T  3754484 tcaaaagaaacaata 3754470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 4158014 - 4158128
Alignment:
Q  4 gcacaaacaatccctcaaaacacccaaggtaagcatgttacagacatctacccctccataactaggaggggatatcttttgataagactcttttgccaaa 103  Q
    |||||| |||||||||||||||||||| |    || || ||| ||||| ||||||||  || ||||||| || ||||||||||||||||| |||||||||    
T  4158014 gcacaagcaatccctcaaaacacccaaagccgacaagtcacacacatccacccctcccaaattaggaggtgaaatcttttgataagactcctttgccaaa 4158113  T
Q  104 tcaaaagaaacaata 118  Q
    ||||| |||||||||    
T  4158114 tcaaatgaaacaata 4158128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 47 - 118
Target Start/End: Original strand, 4142247 - 4142318
Alignment:
Q  47 acatctacccctccataactaggaggggatatcttttgataagactcttttgccaaatcaaaagaaacaata 118  Q
    ||||| ||||||||  || ||||||| || ||||||||||||||||| ||||||||||||||||||||||||    
T  4142247 acatccacccctcccaaattaggaggtgaaatcttttgataagactcctttgccaaatcaaaagaaacaata 4142318  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 118
Target Start/End: Complemental strand, 3745992 - 3745878
Alignment:
Q  4 gcacaaacaatccctcaaaacacccaaggtaagcatgttacagacatctacccctccataactaggaggggatatcttttgataagactcttttgccaaa 103  Q
    |||||| |||||||| ||||||||||| |    || || ||| ||||||| |||||||  ||||||||| || ||||||||| ||| ||| |||||||||    
T  3745992 gcacaagcaatcccttaaaacacccaaagacgacaagtcacacacatctatccctccaatactaggaggtgaaatcttttgaaaagtctcctttgccaaa 3745893  T
Q  104 tcaaaagaaacaata 118  Q
    |||||||||||||||    
T  3745892 tcaaaagaaacaata 3745878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 261
Target Start/End: Complemental strand, 13479423 - 13479308
Alignment:
Q  146 gaggccaaccaattaatagtgccactgacaaattcacctgatcttgcaacagggaaaacaccaaaaggaaactcatggatgtttttccaaatattagaac 245  Q
    |||||||||||||||||  ||||||| |||||||  || ||| |  ||||||| | ||||||||| |||||||| || ||| ||||||||| ||  | ||    
T  13479423 gaggccaaccaattaatcctgccactcacaaattttccagatttctcaacaggcataacaccaaagggaaactcctgaatggttttccaaaaatgggtac 13479324  T
Q  246 ccaaagtatgaacctt 261  Q
    |||| |||||||||||    
T  13479323 ccaatgtatgaacctt 13479308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 336
Target Start/End: Original strand, 9496727 - 9496832
Alignment:
Q  231 tccaaatattagaacccaaagtatgaacctttacttcagattggagaactcaattatcactacctgtactatagcgaataaggtagtgtaggacaacatt 330  Q
    |||||||||||||||| |||| |||||| ||||||||||||| | |||| ||| |||||| || | ||||||  | |||  |||||| ||| |||||| |    
T  9496727 tccaaatattagaacctaaagaatgaacttttacttcagatttgcgaacccaactatcaccacttttactatcacaaatgcggtagtctagaacaacaat 9496826  T
Q  331 cacctt 336  Q
    ||||||    
T  9496827 cacctt 9496832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 266
Target Start/End: Complemental strand, 3754379 - 3754319
Alignment:
Q  206 ccaaaaggaaactcatggatgtttttccaaatattagaacccaaagtatgaacctttactt 266  Q
    ||||||||| | || |||||| || |||| ||||||| |||||||||||||||||||||||    
T  3754379 ccaaaaggatagtcctggatggttctccatatattagtacccaaagtatgaacctttactt 3754319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 266
Target Start/End: Original strand, 7432263 - 7432383
Alignment:
Q  146 gaggccaaccaattaatagtgccactgacaaattcacctgatcttgcaacagggaaaacaccaaaaggaaactcatggatgtttttccaaatattagaac 245  Q
    |||| |||||||||||| |||||||| |||||||  || | |||  ||| ||||| | | ||||||||||||||| ||||| ||||||||  ||| | ||    
T  7432263 gaggtcaaccaattaattgtgccacttacaaattttcccgttctctcaatagggacaccgccaaaaggaaactcagggatgattttccaataattggtac 7432362  T
Q  246 ccaaagtatgaacctttactt 266  Q
    |||  ||||||||||| ||||    
T  7432363 ccagtgtatgaaccttcactt 7432383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 266
Target Start/End: Original strand, 4158244 - 4158279
Alignment:
Q  231 tccaaatattagaacccaaagtatgaacctttactt 266  Q
    |||||||||||| |||||||||||||||||||||||    
T  4158244 tccaaatattagtacccaaagtatgaacctttactt 4158279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 118
Target Start/End: Complemental strand, 2441999 - 2441885
Alignment:
Q  4 gcacaaacaatccctcaaaacacccaaggtaagcatgttacagacatctacccctccataactaggaggggatatcttttgataagactcttttgccaaa 103  Q
    |||||||||||||||||| |||  |||||  |  | |||||| |||| |||||| ||| ||  |||| |  ||| ||||||||||||||||||  |||||    
T  2441999 gcacaaacaatccctcaacacaaacaaggccaagaagttacacacatttacccccccagaatcaggaagcaataccttttgataagactctttctccaaa 2441900  T
Q  104 tcaaaagaaacaata 118  Q
    |||||||||| ||||    
T  2441899 tcaaaagaaataata 2441885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 266
Target Start/End: Original strand, 4142409 - 4142469
Alignment:
Q  206 ccaaaaggaaactcatggatgtttttccaaatattagaacccaaagtatgaacctttactt 266  Q
    ||||||||| |||| || ||| || |||| ||||||| |||||||||||||||| ||||||    
T  4142409 ccaaaaggatactcctgaatggttctccatatattagtacccaaagtatgaaccattactt 4142469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 12132986 - 12132950
Alignment:
Q  87 aagactcttttgccaaatcaaaagaaacaatagaacg 123  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  12132986 aagactcttttcccaaatcaaaagaaacaataaaacg 12132950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 1078245 - 1078359
Alignment:
Q  4 gcacaaacaatccctcaaaacacccaagg-taagcatgttacagacatctacccctccataactaggaggggatatcttttgataagactcttttgccaa 102  Q
    |||||| ||||||||||| |||||||||| |||| | || ||| ||||||||||||||||||  ||||||  | | |||||||||||| |||||| ||||    
T  1078245 gcacaagcaatccctcaacacacccaaggctaagaa-gtgacacacatctacccctccataatcaggaggcaaaaccttttgataagattcttttcccaa 1078343  T
Q  103 atcaaaagaaacaata 118  Q
    ||||||||||||||||    
T  1078344 atcaaaagaaacaata 1078359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 146 - 269
Target Start/End: Original strand, 1078390 - 1078513
Alignment:
Q  146 gaggccaaccaattaatagtgccactgacaaattcacctgatcttgcaacagggaaaacaccaaaaggaaactcatggatgtttttccaaatattagaac 245  Q
    |||| |||||||||||| |||||||| | |||||  || |||  | |||  |||| |||||||||||||||||| || ||| ||||||||  ||| | ||    
T  1078390 gaggtcaaccaattaatcgtgccactcagaaattttccagattgtccaattgggacaacaccaaaaggaaactcttgaatgcttttccaagaattggtac 1078489  T
Q  246 ccaaagtatgaacctttacttcag 269  Q
    |||| ||||||| ||| |||||||    
T  1078490 ccaatgtatgaatcttcacttcag 1078513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 118
Target Start/End: Complemental strand, 11081793 - 11081680
Alignment:
Q  5 cacaaacaatccctcaaaacacccaaggtaagcatgttacagacatctacccctccataactaggaggggatatcttttgataagactcttttgccaaat 104  Q
    ||||| |||||||||||||||||||| |    || |||||  ||||| |||||| |  || ||||||| || ||||||||||||||||| ||||||||||    
T  11081793 cacaagcaatccctcaaaacacccaaagccgacaagttacgcacatccaccccttccaaattaggaggtgaaatcttttgataagactcctttgccaaat 11081694  T
Q  105 caaaagaaacaata 118  Q
    | ||| ||||||||    
T  11081693 cgaaacaaacaata 11081680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 118
Target Start/End: Original strand, 2067174 - 2067251
Alignment:
Q  41 ttacagacatctacccctccataactaggaggggatatcttttgataagactcttttgccaaatcaaaagaaacaata 118  Q
    ||||| ||||||||||| |||||| | |||||    ||||||||||||||||||||  |||||||| | |||||||||    
T  2067174 ttacacacatctaccccaccataattgggaggaagaatcttttgataagactctttccccaaatcatatgaaacaata 2067251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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