View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13386_high_16 (Length: 441)

Name: NF13386_high_16
Description: NF13386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13386_high_16
NF13386_high_16
[»] chr3 (9 HSPs)
chr3 (80-434)||(18319261-18319606)
chr3 (4-200)||(19797914-19798115)
chr3 (134-200)||(19798294-19798360)
chr3 (35-86)||(18320365-18320416)
chr3 (227-278)||(19798437-19798488)
chr3 (260-313)||(30911887-30911940)
chr3 (136-180)||(36326596-36326640)
chr3 (130-183)||(1830892-1830945)
chr3 (136-180)||(14029433-14029477)
[»] chr2 (4 HSPs)
chr2 (255-323)||(4472658-4472726)
chr2 (148-197)||(40400921-40400971)
chr2 (135-177)||(31211922-31211964)
chr2 (148-177)||(31193286-31193315)
[»] chr6 (7 HSPs)
chr6 (134-183)||(7422750-7422799)
chr6 (135-183)||(33242951-33242999)
chr6 (136-179)||(7426693-7426736)
chr6 (134-180)||(13886647-13886693)
chr6 (134-183)||(7415742-7415791)
chr6 (136-180)||(4834825-4834869)
chr6 (136-168)||(16389217-16389249)
[»] chr7 (3 HSPs)
chr7 (135-180)||(42513061-42513106)
chr7 (134-180)||(30452803-30452849)
chr7 (136-180)||(30456412-30456456)
[»] chr8 (4 HSPs)
chr8 (255-323)||(24249006-24249074)
chr8 (134-180)||(44762073-44762119)
chr8 (257-320)||(44765088-44765151)
chr8 (136-180)||(44765380-44765424)
[»] chr4 (7 HSPs)
chr4 (260-320)||(36053737-36053797)
chr4 (134-179)||(55322332-55322377)
chr4 (136-180)||(27387726-27387770)
chr4 (134-177)||(36050772-36050815)
chr4 (136-177)||(36054031-36054072)
chr4 (255-323)||(9236741-9236808)
chr4 (136-168)||(10129632-10129664)
[»] chr5 (4 HSPs)
chr5 (136-177)||(24108807-24108848)
chr5 (134-184)||(10321867-10321917)
chr5 (136-180)||(8123634-8123678)
chr5 (136-180)||(41709606-41709650)
[»] scaffold1064 (1 HSPs)
scaffold1064 (288-323)||(315-350)
[»] chr1 (2 HSPs)
chr1 (290-323)||(9922041-9922074)
chr1 (135-180)||(23405474-23405519)


Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 80 - 434
Target Start/End: Complemental strand, 18319606 - 18319261
Alignment:
Q  80 cctctagtgtgcataaattaatatgctttttcatcatagaatagcacaagaaagaatgatacgacccgattcgagtagggatcacactctagaaattaga 179  Q
    ||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18319606 cctctagtgtgcataaattaatatgttttttcatcatagaaccgcacaagaaagaatgatacgacccgattcgagtagggatcacactctagaaattaga 18319507  T
Q  180 gagattttagaaaggaaaactaaatataacgtgttactct--nnnnnnncaacaatacctaattataatccttcatcgctccttattttaagtatcctat 277  Q
    |||||||||||||||||||||||||||||| |||||||||         ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18319506 gagattttagaaaggaaaactaaatataacatgttactctaaaaaaaaccaacaatccctaattataatccttcatcgctccttattttaagtatcctat 18319407  T
Q  278 cgctatcgaccccttcaagatcaaccttgtcctcaaagttgtaaaacactgcttcaacaataaatttcccagcttaagtgtatttttagccctctcaact 377  Q
    | ||| ||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18319406 cactaccgaccccttcaagatcaaccttgtcctcaa-----------actgcttcaacaataaatttcccagcttaagtgtatttttagccctctcaact 18319318  T
Q  378 ttcacaacgttgtgattttgacctctattnnnnnnntgacaaatttagtcccctatg 434  Q
    |||||||| ||||||||||||||||||||       |||||||||||||||||||||    
T  18319317 ttcacaacattgtgattttgacctctattaaaaaaatgacaaatttagtcccctatg 18319261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 4 - 200
Target Start/End: Original strand, 19797914 - 19798115
Alignment:
Q  4 agaagcattttttagctttcaaattttcaacat-----gttggtatgttacaagatcaatcttttaagggggcagagcaaacctctagtgtgcataaatt 98  Q
    ||||||||||||||  |||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19797914 agaagcattttttaattttcaaattttcaacatgacatgttggtatgttacaagatcaatcttttaagggggcagagcaaacctctagtgtgcataaatt 19798013  T
Q  99 aatatgctttttcatcatagaatagcacaagaaagaatgatacgacccgattcgagtagggatcacactctagaaattagagagattttagaaaggaaaa 198  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||    
T  19798014 aatatgttttttcatcatagaacagcacaagaaagaatgatacgacccgattcgagtagggatcacactccagaaattagagagaatatagaaaggaaaa 19798113  T
Q  199 ct 200  Q
    ||    
T  19798114 ct 19798115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 19798294 - 19798360
Alignment:
Q  134 aatgatacgacccgattcgagtagggatcacactctagaaattagagagattttagaaaggaaaact 200  Q
    ||||||||||||| |||||||||||||||| |||| |||||||||||||| | ||||||||||||||    
T  19798294 aatgatacgacccaattcgagtagggatcagactccagaaattagagagaatatagaaaggaaaact 19798360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 35 - 86
Target Start/End: Complemental strand, 18320416 - 18320365
Alignment:
Q  35 atgttggtatgttacaagatcaatcttttaagggggcagagcaaacctctag 86  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  18320416 atgttggtatgttacaagatcattcttttaagggggcagaacaaacctctag 18320365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 227 - 278
Target Start/End: Original strand, 19798437 - 19798488
Alignment:
Q  227 caacaatacctaattataatccttcatcgctccttattttaagtatcctatc 278  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  19798437 caacaatccctaattataatccatcatcgctccttattttaagtatcctatc 19798488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 260 - 313
Target Start/End: Complemental strand, 30911940 - 30911887
Alignment:
Q  260 ttattttaagtatcctatcgctatcgaccccttcaagatcaaccttgtcctcaa 313  Q
    ||||| |||||||||||||  || ||||||||||||||||||||||||||||||    
T  30911940 ttattctaagtatcctatcattaccgaccccttcaagatcaaccttgtcctcaa 30911887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 36326640 - 36326596
Alignment:
Q  136 tgatacgacccgattcgagtagggatcacactctagaaattagag 180  Q
    ||||||||||| ||||||||||||||||||||| |||| ||||||    
T  36326640 tgatacgacccaattcgagtagggatcacactccagaatttagag 36326596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 1830945 - 1830892
Alignment:
Q  130 aaagaatgatacgacccgattcgagtagggatcacactctagaaattagagaga 183  Q
    |||| |||||||||||| |||| |||||||||||||||| ||||  ||||||||    
T  1830945 aaagtatgatacgacccaattcaagtagggatcacactccagaatctagagaga 1830892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 14029477 - 14029433
Alignment:
Q  136 tgatacgacccgattcgagtagggatcacactctagaaattagag 180  Q
    ||||||| ||| ||||||||||||||||||||| |||| ||||||    
T  14029477 tgatacggcccaattcgagtagggatcacactccagaatttagag 14029433  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 323
Target Start/End: Complemental strand, 4472726 - 4472658
Alignment:
Q  255 gctccttattttaagtatcctatcgctatcgaccccttcaagatcaaccttgtcctcaaagttgtaaaa 323  Q
    |||||||||||||| |||||||||  |||| | |||||||||||||||||||||||||| |||||||||    
T  4472726 gctccttattttaactatcctatcattatctatcccttcaagatcaaccttgtcctcaaggttgtaaaa 4472658  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 40400921 - 40400971
Alignment:
Q  148 attcgagtagggatcacactctagaaa-ttagagagattttagaaaggaaa 197  Q
    ||||||||||||||||||||| ||||| ||||||||| |||||||||||||    
T  40400921 attcgagtagggatcacactccagaaatttagagagaatttagaaaggaaa 40400971  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 177
Target Start/End: Complemental strand, 31211964 - 31211922
Alignment:
Q  135 atgatacgacccgattcgagtagggatcacactctagaaatta 177  Q
    ||||||||| || ||||||||||||||||||||| ||||||||    
T  31211964 atgatacgatccaattcgagtagggatcacactccagaaatta 31211922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 177
Target Start/End: Complemental strand, 31193315 - 31193286
Alignment:
Q  148 attcgagtagggatcacactctagaaatta 177  Q
    ||||||||||||||||||||||||||||||    
T  31193315 attcgagtagggatcacactctagaaatta 31193286  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 7422799 - 7422750
Alignment:
Q  134 aatgatacgacccgattcgagtagggatcacactctagaaattagagaga 183  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  7422799 aatgatacgacccaattcgagtagggatcacactcaagaaattagagaga 7422750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 33242999 - 33242951
Alignment:
Q  135 atgatacgacccgattcgagtagggatcacactctagaaattagagaga 183  Q
    |||||||||||| |||||||||| |||||||||| ||||||||||||||    
T  33242999 atgatacgacccaattcgagtagagatcacactccagaaattagagaga 33242951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 7426736 - 7426693
Alignment:
Q  136 tgatacgacccgattcgagtagggatcacactctagaaattaga 179  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||    
T  7426736 tgatacgacccaattcgagtagggatcacactccagaaattaga 7426693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 180
Target Start/End: Complemental strand, 13886693 - 13886647
Alignment:
Q  134 aatgatacgacccgattcgagtagggatcacactctagaaattagag 180  Q
    ||||||||||||| ||| ||||||||||||||||| |||| ||||||    
T  13886693 aatgatacgacccaatttgagtagggatcacactccagaatttagag 13886647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 7415791 - 7415742
Alignment:
Q  134 aatgatacgacccgattcgagtagggatcacactctagaaattagagaga 183  Q
    |||||||||| || | | ||||||||||||||||| ||||||||||||||    
T  7415791 aatgatacgatccaacttgagtagggatcacactccagaaattagagaga 7415742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 4834869 - 4834825
Alignment:
Q  136 tgatacgacccgattcgagtagggatcacactctagaaattagag 180  Q
    ||||||||||| ||| ||||||||||||||||| |||| ||||||    
T  4834869 tgatacgacccaatttgagtagggatcacactccagaatttagag 4834825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 168
Target Start/End: Original strand, 16389217 - 16389249
Alignment:
Q  136 tgatacgacccgattcgagtagggatcacactc 168  Q
    ||||||||||| |||||||||||||||||||||    
T  16389217 tgatacgacccaattcgagtagggatcacactc 16389249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 42513061 - 42513106
Alignment:
Q  135 atgatacgacccgattcgagtagggatcacactctagaaattagag 180  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||    
T  42513061 atgatacgacccaattcgagtagggatcacactccagaaattagag 42513106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 180
Target Start/End: Complemental strand, 30452849 - 30452803
Alignment:
Q  134 aatgatacgacccgattcgagtagggatcacactctagaaattagag 180  Q
    ||||||||||||| ||||||||||||||||||||| |||| ||||||    
T  30452849 aatgatacgacccaattcgagtagggatcacactccagaatttagag 30452803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 30456456 - 30456412
Alignment:
Q  136 tgatacgacccgattcgagtagggatcacactctagaaattagag 180  Q
    ||||||||||| ||||||||||||||||||||| |||| ||||||    
T  30456456 tgatacgacccaattcgagtagggatcacactccagaatttagag 30456412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 323
Target Start/End: Complemental strand, 24249074 - 24249006
Alignment:
Q  255 gctccttattttaagtatcctatcgctatcgaccccttcaagatcaaccttgtcctcaaagttgtaaaa 323  Q
    |||||||||||| | |||||||||  |||| |||||||||| |||||| |||||||||| |||||||||    
T  24249074 gctccttattttgaatatcctatcattatctaccccttcaatatcaacgttgtcctcaaggttgtaaaa 24249006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 180
Target Start/End: Complemental strand, 44762119 - 44762073
Alignment:
Q  134 aatgatacgacccgattcgagtagggatcacactctagaaattagag 180  Q
    ||||||||||||| ||||||||||||||||||||| |||| ||||||    
T  44762119 aatgatacgacccaattcgagtagggatcacactccagaatttagag 44762073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 44765151 - 44765088
Alignment:
Q  257 tccttattttaagtatcctatcgctatcgaccccttcaagatcaaccttgtcctcaaagttgta 320  Q
    |||||||| ||  |||||||||  || | |||||||||||||||||||||||||||| ||||||    
T  44765151 tccttattctagatatcctatcattaccaaccccttcaagatcaaccttgtcctcaaggttgta 44765088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 44765424 - 44765380
Alignment:
Q  136 tgatacgacccgattcgagtagggatcacactctagaaattagag 180  Q
    ||||||||||| |||||||||||||| |||||| |||| ||||||    
T  44765424 tgatacgacccaattcgagtagggattacactccagaatttagag 44765380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 320
Target Start/End: Complemental strand, 36053797 - 36053737
Alignment:
Q  260 ttattttaagtatcctatcgctatcgaccccttcaagatcaaccttgtcctcaaagttgta 320  Q
    ||||| ||| |||||||||  || |||||||||||||||||||||||||||||| ||||||    
T  36053797 ttattctaaatatcctatcattaccgaccccttcaagatcaaccttgtcctcaaggttgta 36053737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 55322332 - 55322377
Alignment:
Q  134 aatgatacgacccgattcgagtagggatcacactctagaaattaga 179  Q
    ||||||||||||| ||||||||||||||||||||| |||| |||||    
T  55322332 aatgatacgacccaattcgagtagggatcacactccagaatttaga 55322377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 27387770 - 27387726
Alignment:
Q  136 tgatacgacccgattcgagtagggatcacactctagaaattagag 180  Q
    ||||||||||| ||||||||||||||||||||| |||| ||||||    
T  27387770 tgatacgacccaattcgagtagggatcacactccagaatttagag 27387726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 177
Target Start/End: Complemental strand, 36050815 - 36050772
Alignment:
Q  134 aatgatacgacccgattcgagtagggatcacactctagaaatta 177  Q
    ||||||||||||| ||||||||||||||||||||| | ||||||    
T  36050815 aatgatacgacccaattcgagtagggatcacactccaaaaatta 36050772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 177
Target Start/End: Complemental strand, 36054072 - 36054031
Alignment:
Q  136 tgatacgacccgattcgagtagggatcacactctagaaatta 177  Q
    ||||||||||| ||||||||||||||||||||| | ||||||    
T  36054072 tgatacgacccaattcgagtagggatcacactccaaaaatta 36054031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 323
Target Start/End: Complemental strand, 9236808 - 9236741
Alignment:
Q  255 gctccttattttaagtatcctatcgctatcgaccccttcaagatcaaccttgtcctcaaagttgtaaaa 323  Q
    |||| ||||||||| |||||||||  || | |||| ||||| ||||||||||||||||| |||||||||    
T  9236808 gctcattattttaattatcctatcattacctaccc-ttcaatatcaaccttgtcctcaaggttgtaaaa 9236741  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 168
Target Start/End: Original strand, 10129632 - 10129664
Alignment:
Q  136 tgatacgacccgattcgagtagggatcacactc 168  Q
    ||||||||||| |||||||||||||||||||||    
T  10129632 tgatacgacccaattcgagtagggatcacactc 10129664  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 177
Target Start/End: Complemental strand, 24108848 - 24108807
Alignment:
Q  136 tgatacgacccgattcgagtagggatcacactctagaaatta 177  Q
    ||||||||||| ||||||||||||||||||||| ||||||||    
T  24108848 tgatacgacccaattcgagtagggatcacactccagaaatta 24108807  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 10321867 - 10321917
Alignment:
Q  134 aatgatacgacccgattcgagtagggatcacactctagaaattagagagat 184  Q
    ||||||||||||| ||| ||||||||||||||||| | || ||||||||||    
T  10321867 aatgatacgacccaatttgagtagggatcacactccataatttagagagat 10321917  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 8123678 - 8123634
Alignment:
Q  136 tgatacgacccgattcgagtagggatcacactctagaaattagag 180  Q
    ||||||||||| ||||||||| ||||||||||  |||||||||||    
T  8123678 tgatacgacccaattcgagtatggatcacacttcagaaattagag 8123634  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 41709650 - 41709606
Alignment:
Q  136 tgatacgacccgattcgagtagggatcacactctagaaattagag 180  Q
    ||||||||||| |||||||||| |||||||||| |||| ||||||    
T  41709650 tgatacgacccaattcgagtagagatcacactccagaatttagag 41709606  T

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Target: scaffold1064 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1064
Description:

Target: scaffold1064; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 323
Target Start/End: Complemental strand, 350 - 315
Alignment:
Q  288 cccttcaagatcaaccttgtcctcaaagttgtaaaa 323  Q
    |||||||||||||||||||||||||| |||||||||    
T  350 cccttcaagatcaaccttgtcctcaaggttgtaaaa 315  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 323
Target Start/End: Original strand, 9922041 - 9922074
Alignment:
Q  290 cttcaagatcaaccttgtcctcaaagttgtaaaa 323  Q
    ||||||||||||||||||||||||| ||||||||    
T  9922041 cttcaagatcaaccttgtcctcaaaattgtaaaa 9922074  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 23405474 - 23405519
Alignment:
Q  135 atgatacgacccgattcgagtagggatcacactctagaaattagag 180  Q
    |||||||||||| |||| |||||||||||||||| |||| ||||||    
T  23405474 atgatacgacccaattcaagtagggatcacactccagaatttagag 23405519  T

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