View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13386_high_17 (Length: 392)
Name: NF13386_high_17
Description: NF13386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13386_high_17 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 17 - 392
Target Start/End: Complemental strand, 31777864 - 31777489
Alignment:
| Q |
17 |
atagtgcatgtaaaatctctcaacaaatttctaaatttgctatttagacacattgctaaacatttctctcttcacacactatcactcaacacaatggctt |
116 |
Q |
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| T |
31777864 |
atagtgcatgtaaaatctctcaaaaaacttctaaatttgctatttagacacattgctaaacatttctctcttcacacactatcactcaacacaatggctt |
31777765 |
T |
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| Q |
117 |
ctcttattcatagcaatctagtttctctcttctgtcacatttttctcttgttgataatttcttatccacccaacatactttcccagcaaccaacctcctc |
216 |
Q |
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| T |
31777764 |
ctcttattcatagcaatctagtttctctcttctgtcacatttttctcttgttgataatttcttatccacccaacatactttcccagcaaccaacctcctc |
31777665 |
T |
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| Q |
217 |
aagccctacaatagctccatgcacatcaagcctccttcctctctttccctgcatgccattcgtgcaaggcgcggttagcactccggccaccagctgttgt |
316 |
Q |
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| T |
31777664 |
aagccctacaatagctccatgcacatcaagcctccttcctctctttccctgcatgccgttcgtgcaaggcgcggttagcactccggccaccggctgttgt |
31777565 |
T |
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| Q |
317 |
agcaaccttgagcaactctatagccaagagccacactgtctttgcttcttgtttaacaacactacttttacctctt |
392 |
Q |
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| T |
31777564 |
agcaaccttgagcaactctatagccaagagccacactgtctttgcttcttgtttaacaacactacttttacctctt |
31777489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 262
Target Start/End: Complemental strand, 31783127 - 31782906
Alignment:
| Q |
43 |
atttctaaatttgctatttagacacattgctaaacatttctctcttcacacactat--cactcaacacaatggcttctcttattcatagcaatctagttt |
140 |
Q |
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|||||||| || |||||||||||||| |||||||||||||||||||| |||| || ||| ||||| | || ||||||||||| ||| |||||||| |
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| T |
31783127 |
atttctaatttctctatttagacacatggctaaacatttctctcttcatacaccattacacacaacatactgatttctcttattcgctgcactctagttt |
31783028 |
T |
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| Q |
141 |
ctctcttctgtcacatttttctcttgttgataatttcttatccacccaacatactttcccagcaaccaacctcctcaagccctacaatagctccatgcac |
240 |
Q |
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| | | || ||||||| || ||||||||||||||| |||| ||| || ||| ||| || | |||| ||||| || || ||||||| | ||| ||| |
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| T |
31783027 |
ttgtttcctttcacattactcccttgttgataatttcctatcaaccgaatataattttagagaacccaagctcctgaaaccaaacaatagtttcatacac |
31782928 |
T |
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| Q |
241 |
atcaagcctccttcctctcttt |
262 |
Q |
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|||||||||||||||||||||| |
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| T |
31782927 |
atcaagcctccttcctctcttt |
31782906 |
T |
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