View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13386_high_18 (Length: 391)
Name: NF13386_high_18
Description: NF13386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13386_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 380
Target Start/End: Complemental strand, 24429837 - 24429459
Alignment:
| Q |
19 |
gccactgctgtccatactgttcctgttacaaacaaatcaccgtaattttgttaaagttttaaagtgtaattttgacgtc--------cgtcaatccaaac |
110 |
Q |
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| T |
24429837 |
gccactgctgtccatactgttcctgttacaaacaaatcaccgtaattttgttaaagctttaaagtgtaattttgatgtcaaatttaccgtcaatccaaac |
24429738 |
T |
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| Q |
111 |
atgtactaaagaccattgtcaagattcaaaaacaacatatgcttatttatttatcaatgattcaaattttcaatatgaaaataaaaacttgtattgatta |
210 |
Q |
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| T |
24429737 |
atatactaaagaccattgtcaagattcagaaacaacatatacttatttatttatcaatgattcaaattttcaatatgaaaataaaaagttgtattgatta |
24429638 |
T |
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| Q |
211 |
aaatgcacatgactcagaaacagaactatata---------tgataattttatttgataagaattgagaagaaaaagtacaaaccagttcttttgacatg |
301 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24429637 |
aaatgcacatgactcagaaacagaactatataataaatatatgataattttatttgataagaattgagaagaaaaagtacaaaccagttcttttgacatg |
24429538 |
T |
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| Q |
302 |
atatgaattatctgcatattgggtttgcaataatggggtgctaccatctgcatcacactctcttccactcatgatgatg |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24429537 |
atatgaattatctgcatattgggtttgcaataatggggtgctaccatctgcatcacactctcttccactcatgatgatg |
24429459 |
T |
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