View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13386_high_20 (Length: 372)
Name: NF13386_high_20
Description: NF13386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13386_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 25892753 - 25892467
Alignment:
| Q |
17 |
atagcttatgttcctacgtacagctgaccaaatcacagattgcttgactaaatctctctctcattactatcatttgtaataatgtctagcacaatgtaag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25892753 |
atagcttatgttcctacgtacagctgaccaaatcacagattgcttgactaaatctctctctcattactatcatttgtaataatgtctagcacaatgtaag |
25892654 |
T |
|
| Q |
117 |
gatcatatctgtatattccttatcattctttctgtcaacaatgttgttagcaattcgcatgtttttgccgtctgtttctgttgtggtgaagatgatagat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
25892653 |
gatcatatctgtatattccttatcattctttctgtcaacaatgttgttagcaattcgcatgtttgtgccggctgtttctgttgtggtgaagatgatagat |
25892554 |
T |
|
| Q |
217 |
gcaccccttgcagcaagagattttcc-tagaccaacaagatggtttaggtgtcgttgtaatggaaaagagacaaggaggagcttaat |
302 |
Q |
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|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25892553 |
gcaccccttgcagcaagagattttccttagaccaagaagatggtttaggtgtcgttgaaatggaaaagagacaaggaggagcttaat |
25892467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 25818502 - 25818562
Alignment:
| Q |
17 |
atagcttatgttcctacgtacagctgaccaaatcacagattgcttgactaaatctctctctcatt |
81 |
Q |
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| T |
25818502 |
atagcttatgttcctac----agctgaccaaatcgcagattgcttgactaaatccctcactcatt |
25818562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 25814433 - 25814477
Alignment:
| Q |
89 |
tttgtaataatgtctagcacaatgtaaggatcatatctgtatatt |
133 |
Q |
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| T |
25814433 |
tttgtaataatgcttagcacaatgtaaggattatatctgtatatt |
25814477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 25818736 - 25818780
Alignment:
| Q |
89 |
tttgtaataatgtctagcacaatgtaaggatcatatctgtatatt |
133 |
Q |
| |
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|||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
25818736 |
tttgtaataatgcttagcacaatgtaaggattatatctgtatatt |
25818780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 157 - 302
Target Start/End: Original strand, 48585757 - 48585902
Alignment:
| Q |
157 |
atgttgttagcaattcgcatgtttttgccgtctgtttctgttgtggtgaagatgatagatgcaccccttgcagcaagagattttcctagaccaacaagat |
256 |
Q |
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|||||||||||| ||||||||||||||| | || ||||||||||||||||| | || |||||| ||||||||||| | |||||||| |||||||||| |
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| T |
48585757 |
atgttgttagcagctcgcatgtttttgccagccgtctctgttgtggtgaagataacagtggcaccctttgcagcaagatactttcctagtccaacaagat |
48585856 |
T |
|
| Q |
257 |
ggtttaggtgtcgttgtaatggaaaagagacaaggaggagcttaat |
302 |
Q |
| |
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|||||| ||||| |||| |||||||||||||||||| |||||||| |
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| T |
48585857 |
ggtttatgtgtccttgtgctggaaaagagacaaggagaagcttaat |
48585902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 157 - 302
Target Start/End: Original strand, 48640330 - 48640475
Alignment:
| Q |
157 |
atgttgttagcaattcgcatgtttttgccgtctgtttctgttgtggtgaagatgatagatgcaccccttgcagcaagagattttcctagaccaacaagat |
256 |
Q |
| |
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|||||||||||| ||||||||||||||| | || ||||||||||||||||| | || |||||| ||||||||||| | |||||||| |||||||||| |
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| T |
48640330 |
atgttgttagcagctcgcatgtttttgccagccgtctctgttgtggtgaagataacagtggcaccctttgcagcaagatactttcctagtccaacaagat |
48640429 |
T |
|
| Q |
257 |
ggtttaggtgtcgttgtaatggaaaagagacaaggaggagcttaat |
302 |
Q |
| |
|
|||||| ||||| |||| |||||||||||||||||| |||||||| |
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| T |
48640430 |
ggtttatgtgtccttgtgctggaaaagagacaaggagaagcttaat |
48640475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 169 - 295
Target Start/End: Original strand, 48667565 - 48667691
Alignment:
| Q |
169 |
attcgcatgtttttgccgtctgtttctgttgtggtgaagatgatagatgcaccccttgcagcaagagattttcctagaccaacaagatggtttaggtgtc |
268 |
Q |
| |
|
|||||||| |||||||| || ||||||||||| ||||||||| ||| |||||| ||||||||||| |||| ||||| | || |||| |||||| ||||| |
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| T |
48667565 |
attcgcatatttttgccacctttttctgttgtgatgaagatgacagaagcaccctttgcagcaagacatttacctagtctaagaagagggtttatgtgtc |
48667664 |
T |
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| Q |
269 |
gttgtaatggaaaagagacaaggagga |
295 |
Q |
| |
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|||| ||||||||| |||||||||| |
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| T |
48667665 |
cttgtgctggaaaagaaacaaggagga |
48667691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 295
Target Start/End: Original strand, 48629280 - 48629406
Alignment:
| Q |
169 |
attcgcatgtttttgccgtctgtttctgttgtggtgaagatgatagatgcaccccttgcagcaagagattttcctagaccaacaagatggtttaggtgtc |
268 |
Q |
| |
|
|||||||||| |||||| || | |||||||| || ||||||| ||| |||||| ||||||||||| |||||||||| | || |||| |||||| ||||| |
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| T |
48629280 |
attcgcatgtctttgcctgctttctctgttgtagtaaagatgacagaggcaccctttgcagcaagacattttcctagtctaagaagagggtttatgtgtc |
48629379 |
T |
|
| Q |
269 |
gttgtaatggaaaagagacaaggagga |
295 |
Q |
| |
|
|||| ||||||||| ||||| |||| |
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| T |
48629380 |
cttgtgctggaaaagaaacaagtagga |
48629406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 295
Target Start/End: Original strand, 48661974 - 48662102
Alignment:
| Q |
167 |
caattcgcatgtttttgccgtctgtttctgttgtggtgaagatgatagatgcaccccttgcagcaagagattttcctagaccaacaagatggtttaggtg |
266 |
Q |
| |
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|||||| ||||| |||||| || | |||||||||||||| |||| ||| ||||| ||||||||||| | |||||||| | || |||| |||||| ||| |
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| T |
48661974 |
caattcccatgtctttgccagctttctctgttgtggtgaaaatgacagaggcaccttttgcagcaagacactttcctagtctaagaagagggtttatgtg |
48662073 |
T |
|
| Q |
267 |
tcgttgtaatggaaaagagacaaggagga |
295 |
Q |
| |
|
|| |||| ||||||||| |||||||||| |
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| T |
48662074 |
tccttgtgctggaaaagaaacaaggagga |
48662102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 295
Target Start/End: Complemental strand, 48617869 - 48617767
Alignment:
| Q |
193 |
tctgttgtggtgaagatgatagatgcaccccttgcagcaagagattttcctagaccaacaagatggtttaggtgtcgttgtaatggaaaagagacaagga |
292 |
Q |
| |
|
||||||||| ||||||||| ||| |||||| ||||||||||| | ||| |||| | || |||| |||||| ||||| |||| |||| |||||| ||| | |
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| T |
48617869 |
tctgttgtgatgaagatgacagaagcaccctttgcagcaagacactttgctagtctaagaagagggtttatgtgtccttgtgctggataagagataagaa |
48617770 |
T |
|
| Q |
293 |
gga |
295 |
Q |
| |
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||| |
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|
| T |
48617769 |
gga |
48617767 |
T |
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