View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13386_high_21 (Length: 371)
Name: NF13386_high_21
Description: NF13386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13386_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 23 - 354
Target Start/End: Original strand, 36681420 - 36681734
Alignment:
| Q |
23 |
caaacaacattaacacaaattcaacccaaattaacaaaagttataaccatatattaaagtaacaaattgtaaatttaattttgccnnnnnnnnnnnnnng |
122 |
Q |
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| T |
36681420 |
caaacaacattaacacaaattcaacccaaattaacaaaagttataaccataaattaaagcaacaaattgtaaatttaattttgccaaaaaaaaaaaa--- |
36681516 |
T |
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| Q |
123 |
caaatttaactaattaacctaaatcataacaacaacaacacaccctctcccctttctttccccacaccactcacttatcttcttctccctcgtctatctt |
222 |
Q |
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| T |
36681517 |
caaatttaactaattaacctaaatcataacaacaacaacacactctccccccttt----ccccacaccactcacttatcttcttctccctcgtctatctt |
36681612 |
T |
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| Q |
223 |
ttcaccataacaaccccaacctctatttaattccaaaatatgaagnnnnnnnnntcctccttgatgaaatcaacgatttgcaataatagaaattcatctt |
322 |
Q |
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| T |
36681613 |
ttc---------accccaacctctatttaattccaaaatatgaag-aaaaaaaatcctccttgatgaaatcaacgatttgcaataatagaaattcatctt |
36681702 |
T |
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| Q |
323 |
agattcacatcgagtggtattactgaggcata |
354 |
Q |
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| T |
36681703 |
agattcacatcgattggtattattgaggcata |
36681734 |
T |
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