View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13386_high_23 (Length: 340)

Name: NF13386_high_23
Description: NF13386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13386_high_23
NF13386_high_23
[»] scaffold0352 (2 HSPs)
scaffold0352 (59-259)||(16629-16829)
scaffold0352 (291-340)||(16545-16594)
[»] chr4 (5 HSPs)
chr4 (1-228)||(32651082-32651310)
chr4 (1-82)||(41810185-41810266)
chr4 (1-42)||(38467710-38467751)
chr4 (76-136)||(12506525-12506584)
chr4 (1-40)||(3649885-3649924)
[»] chr1 (4 HSPs)
chr1 (1-129)||(17726046-17726174)
chr1 (1-56)||(22368184-22368239)
chr1 (7-68)||(14184705-14184766)
chr1 (1-62)||(32440628-32440689)
[»] chr3 (4 HSPs)
chr3 (1-82)||(52130803-52130884)
chr3 (1-144)||(19766028-19766169)
chr3 (1-62)||(11394032-11394093)
chr3 (1-62)||(46233942-46234003)
[»] chr6 (2 HSPs)
chr6 (180-246)||(4289976-4290044)
chr6 (1-67)||(31444785-31444850)
[»] chr7 (2 HSPs)
chr7 (1-82)||(7841301-7841382)
chr7 (1-62)||(21820154-21820214)
[»] chr8 (3 HSPs)
chr8 (1-67)||(44663658-44663723)
chr8 (4-62)||(19962047-19962104)
chr8 (1-42)||(35349005-35349046)
[»] chr2 (3 HSPs)
chr2 (1-67)||(4453792-4453857)
chr2 (1-31)||(7161830-7161860)
chr2 (1-62)||(9208584-9208645)
[»] scaffold0157 (1 HSPs)
scaffold0157 (76-136)||(13893-13952)
[»] scaffold0152 (1 HSPs)
scaffold0152 (2-68)||(10210-10275)
[»] chr5 (1 HSPs)
chr5 (55-113)||(26044778-26044836)


Alignment Details
Target: scaffold0352 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 59 - 259
Target Start/End: Complemental strand, 16829 - 16629
Alignment:
Q  59 ccaaacaatcatgaccattagatctctatcattagacacaattatcatatcagccatttgatcatatcttaatgctggcttacacagaacactaccatca 158  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| | ||| |||||||    
T  16829 ccaaacaatcatgaccattagatctctatcattaggcacaattaacatatcagccatttgatcatatcttaatgctggcttacacacatcacaaccatca 16730  T
Q  159 attcaaatttgaattttctctattggaactctaattgttcaccgatgctaaaaatcagtgtgatatttttactattccaatgcacatacattctcatgac 258  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16729 attcaaatttgaattttccccattggaactctaattgttcaccgatgctaaaaatcagtgtgatatttttactattccaatgcacatacattctcatgac 16630  T
Q  259 t 259  Q
    |    
T  16629 t 16629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 291 - 340
Target Start/End: Complemental strand, 16594 - 16545
Alignment:
Q  291 aatcaaccaaaaccttcatcactgattctttctctgcattccttctctta 340  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  16594 aatcaaccaaaaccttcatcactaattctttctctgcattccttctctta 16545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 155; Significance: 3e-82; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 32651310 - 32651082
Alignment:
Q  1 taatcctagttaacactccaattatcacttaaaaccctaattttaagatttttaggcgccaaacaatcatgaccattagatctctatcattagacacaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||    
T  32651310 taatcctagttaacactccaattatcacttaaaaccctaattctaagatttttaggcgccaaacaatcatgaccattagatctctatcattaggcgcaat 32651211  T
Q  101 tatcatatcagccatttgatcatatcttaatgctggcttacacagaacactaccatcaattcaaatttgaattttctctattggaactctaattgttcac 200  Q
    ||||||||||| || ||||||| ||||||||| |||||| |||| | ||| ||||||||||||||||||||||||  | |||||||||||||||||||||    
T  32651210 tatcatatcagtca-ttgatcacatcttaatgatggcttgcacacatcacaaccatcaattcaaatttgaatttttcccattggaactctaattgttcac 32651112  T
Q  201 cga--tgctaaaaatcagtgtgatattttt 228  Q
    |||   ||||||||||||||||||||||||    
T  32651111 cgaaccgctaaaaatcagtgtgatattttt 32651082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 41810185 - 41810266
Alignment:
Q  1 taatcctagttaacactccaattatcacttaaaaccctaattttaagatttttaggcgccaaacaatcatgaccattagatc 82  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||  |||| |||||||    
T  41810185 taatcctagttaacactccaattaccacttaaaaccctaattttaagatttttaagcgccaatcaatccagaccgttagatc 41810266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 38467751 - 38467710
Alignment:
Q  1 taatcctagttaacactccaattatcacttaaaaccctaatt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  38467751 taatcctagttaacactccaattaacacttaaaaccctaatt 38467710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 12506525 - 12506584
Alignment:
Q  76 ttagatctctatcattagacacaattatcatatcagccatttgatcatatcttaatgctgg 136  Q
    ||||||||||||| |||| | |||||||||||||||||| ||||||| |||||||||||||    
T  12506525 ttagatctctatcgttaggcgcaattatcatatcagcca-ttgatcagatcttaatgctgg 12506584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 3649885 - 3649924
Alignment:
Q  1 taatcctagttaacactccaattatcacttaaaaccctaa 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  3649885 taatcctagttaacactccaattaacacttaaaaccctaa 3649924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 6e-62; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 17726046 - 17726174
Alignment:
Q  1 taatcctagttaacactccaattatcacttaaaaccctaattttaagatttttaggcgccaaacaatcatgaccattagatctctatcattagacacaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17726046 taatcctagttaacactccaattatcacttaaaaccctaattctaagatttttaggcgccaaacaatcatgaccattagatctctatcattagacgcaat 17726145  T
Q  101 tatcatatcagccatttgatcatatctta 129  Q
    |||||||||||||||||||||||||||||    
T  17726146 tatcatatcagccatttgatcatatctta 17726174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 22368239 - 22368184
Alignment:
Q  1 taatcctagttaacactccaattatcacttaaaaccctaattttaagatttttagg 56  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  22368239 taatcctagttaacacttcaattatcacttaaaaccctaattctaagatttttagg 22368184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 14184705 - 14184766
Alignment:
Q  7 tagttaacactccaattatcacttaaaaccctaattttaagatttttaggcgccaaacaatc 68  Q
    |||||||||||| ||||| |||||||||| |||||| ||||||||||||||||||| |||||    
T  14184705 tagttaacactctaattaccacttaaaactctaattctaagatttttaggcgccaatcaatc 14184766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 32440689 - 32440628
Alignment:
Q  1 taatcctagttaacactccaattatcact-taaaaccctaattttaagatttttaggcgccaa 62  Q
    |||||||||||||||||||||||||||||  |||||||||||  ||| | |||||||||||||    
T  32440689 taatcctagttaacactccaattatcactccaaaaccctaatcctaa-agttttaggcgccaa 32440628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 52130803 - 52130884
Alignment:
Q  1 taatcctagttaacactccaattatcacttaaaaccctaattttaagatttttaggcgccaaacaatcatgaccattagatc 82  Q
    ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||  |||| |||||||    
T  52130803 taatcctaggtaacactccaattaccacttaaaaccctaattctaagatttttaggcgccaatcaatccagaccgttagatc 52130884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 19766028 - 19766169
Alignment:
Q  1 taatcctagttaacactccaattatcacttaaaaccctaattttaagatttttaggcgccaaacaatcatgaccattagatctctatcattagacacaat 100  Q
    |||||||||||||||||||||||| ||||  ||||||||||  ||   ||||||||||||||||||||  | || || ||||| | ||||||||||   |    
T  19766028 taatcctagttaacactccaattaacactccaaaccctaatcctact-tttttaggcgccaaacaatccaggccgttggatctatgtcattagacaagct 19766126  T
Q  101 tatcatatcagccatttgatcatatcttaatgctggcttacaca 144  Q
    || ||||||||||  ||||||| |||||||||||||||| ||||    
T  19766127 taacatatcagcc-cttgatcaaatcttaatgctggcttgcaca 19766169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 11394032 - 11394093
Alignment:
Q  1 taatcctagttaacactccaattatcact-taaaaccctaattttaagatttttaggcgccaa 62  Q
    |||||||||||||||||||||||||||||  |||||||||||  ||| | |||||||||||||    
T  11394032 taatcctagttaacactccaattatcactccaaaaccctaatcctaa-agttttaggcgccaa 11394093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 46234003 - 46233942
Alignment:
Q  1 taatcctagttaacactccaattatcact-taaaaccctaattttaagatttttaggcgccaa 62  Q
    |||||||||||||||||||||||||||||  |||||||||||  ||| | |||||||||||||    
T  46234003 taatcctagttaacactccaattatcactccaaaaccctaatcctaa-agttttaggcgccaa 46233942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 4289976 - 4290044
Alignment:
Q  180 attggaactctaattgttcaccgat--gctaaaaatcagtgtgatatttttactattccaatgcacata 246  Q
    |||| |||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  4289976 attgaaactctaatttttcaccgatccgctaaaaatcagtgtgatatttttactattccaatgcacata 4290044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 31444785 - 31444850
Alignment:
Q  1 taatcctagttaacactccaattatcacttaaaaccctaattttaagatttttaggcgccaaacaat 67  Q
    ||||||||||||||||||||||||  |||||||||||||||| | | | ||||||||||||| ||||    
T  31444785 taatcctagttaacactccaattactacttaaaaccctaattct-ataattttaggcgccaatcaat 31444850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 7841301 - 7841382
Alignment:
Q  1 taatcctagttaacactccaattatcacttaaaaccctaattttaagatttttaggcgccaaacaatcatgaccattagatc 82  Q
    |||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||| | ||| |||||  |||| |||||||    
T  7841301 taatcctagttaacactctaattaccacttaaaaccctaattctaagatttttaggtgtcaatcaatccagaccgttagatc 7841382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 21820214 - 21820154
Alignment:
Q  1 taatcctagttaacactccaattatcacttaaaaccctaattttaagatttttaggcgccaa 62  Q
    |||||||| ||||||||||||||| ||||||||||| ||||| | | |||||||||||||||    
T  21820214 taatcctaattaacactccaattaacacttaaaaccataattct-acatttttaggcgccaa 21820154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 44663723 - 44663658
Alignment:
Q  1 taatcctagttaacactccaattatcacttaaaaccctaattttaagatttttaggcgccaaacaat 67  Q
    |||||||||||||||||||||||| ||||||||||||||||| || || ||||||||||||| ||||    
T  44663723 taatcctagttaacactccaattaccacttaaaaccctaattctatga-ttttaggcgccaatcaat 44663658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 19962047 - 19962104
Alignment:
Q  4 tcctagttaacactccaattatcacttaaaaccctaattttaagatttttaggcgccaa 62  Q
    ||||||||||||||| ||||| ||||||||||||||||||| |  ||||||||||||||    
T  19962047 tcctagttaacactcaaattaacacttaaaaccctaatttt-acttttttaggcgccaa 19962104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 35349005 - 35349046
Alignment:
Q  1 taatcctagttaacactccaattatcacttaaaaccctaatt 42  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  35349005 taatcctagttaacactccaattaacacttaaaatcctaatt 35349046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 4453792 - 4453857
Alignment:
Q  1 taatcctagttaacactccaattatcacttaaaaccctaattttaagatttttaggcgccaaacaat 67  Q
    |||||||||||||||||||||||| ||||||||||||||||| || || ||||||||||||| ||||    
T  4453792 taatcctagttaacactccaattaccacttaaaaccctaattctatga-ttttaggcgccaatcaat 4453857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 7161830 - 7161860
Alignment:
Q  1 taatcctagttaacactccaattatcactta 31  Q
    |||||||||||||||||||||||||||||||    
T  7161830 taatcctagttaacactccaattatcactta 7161860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 9208584 - 9208645
Alignment:
Q  1 taatcctagttaacactccaattatcact-taaaaccctaattttaagatttttaggcgccaa 62  Q
    |||||||||||||||||||||||||||||  |||||||||||  ||| | |||||||||||||    
T  9208584 taatcctagttaacactccaattatcactccaaaaccctaatcctaa-agttttaggcgccaa 9208645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 13952 - 13893
Alignment:
Q  76 ttagatctctatcattagacacaattatcatatcagccatttgatcatatcttaatgctgg 136  Q
    ||||||||||||| |||| | |||||||||||||||||| ||||||| |||||||||||||    
T  13952 ttagatctctatcgttaggcgcaattatcatatcagcca-ttgatcagatcttaatgctgg 13893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 10210 - 10275
Alignment:
Q  2 aatcctagttaacactccaattatcacttaaaaccctaattttaagatttttaggcgccaaacaatc 68  Q
    ||||||||||||||||||||||| ||||  ||||||||||| | |  ||||||||||||||||||||    
T  10210 aatcctagttaacactccaattaacactccaaaccctaattct-acttttttaggcgccaaacaatc 10275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 26044836 - 26044778
Alignment:
Q  55 ggcgccaaacaatcatgaccattagatctctatcattagacacaattatcatatcagcc 113  Q
    ||||||||||||||||| || ||||||||||||| |||| | ||||| |||||| ||||    
T  26044836 ggcgccaaacaatcatggccgttagatctctatctttaggcgcaattttcatataagcc 26044778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University