View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13386_high_32 (Length: 241)
Name: NF13386_high_32
Description: NF13386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13386_high_32 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 25 - 231
Target Start/End: Original strand, 5607560 - 5607766
Alignment:
| Q |
25 |
gtagcattttaactggctggggaaagcacagtaaagtgcttggagatggaactttaaaaaaggctgttgaagcactcctaaatggcatgggctccccctt |
124 |
Q |
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| T |
5607560 |
gtagcattttaactggctggggaaagcacagtaaagtgcttggagatggaactttaaaaaaggctgttgaagcactcctaaatggcatgggctccccctt |
5607659 |
T |
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| Q |
125 |
tagaatttatgagaataatttgggaagattggtgtctcctggagaagtgctgactgcttggctgacaaaacctggagttttcaacttgcttgttctggat |
224 |
Q |
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| T |
5607660 |
cagaatttatgagaataatttgggaagattggtgtctcctggagaagtgctgactgcttggttgacaaaacctggagttttcaacttgcttgttctgtct |
5607759 |
T |
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| Q |
225 |
gatgtcc |
231 |
Q |
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||||||| |
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| T |
5607760 |
gatgtcc |
5607766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 151
Target Start/End: Complemental strand, 5588410 - 5588286
Alignment:
| Q |
27 |
agcattttaactggctggggaaagcacagtaaagtgcttggagatggaactttaaaaaaggctgttgaagcactcctaaatggcatgggctcccccttta |
126 |
Q |
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||||| |||||||| |||||||||||||| |||||| | || || |||||||| |||| |||||| || |||||||| ||||| ||||| || ||||||| |
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| T |
5588410 |
agcatcttaactggttggggaaagcacagcaaagtgatgggtgacggaactttgaaaagggctgtcgaggcactccttaatggaatggggtcacccttta |
5588311 |
T |
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| Q |
127 |
gaatttatgagaataatttgggaag |
151 |
Q |
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| ||| |||| |||||||||||| |
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| T |
5588310 |
ggattgctgagggtaatttgggaag |
5588286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 151
Target Start/End: Complemental strand, 5593371 - 5593247
Alignment:
| Q |
27 |
agcattttaactggctggggaaagcacagtaaagtgcttggagatggaactttaaaaaaggctgttgaagcactcctaaatggcatgggctcccccttta |
126 |
Q |
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||||| |||||||| |||||||||||||| |||||| | || || |||||||| |||| |||||| || |||||||| ||||| ||||| || ||||||| |
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| T |
5593371 |
agcatcttaactggttggggaaagcacagcaaagtgatgggtgacggaactttgaaaagggctgtcgaggcactccttaatggaatggggtcacccttta |
5593272 |
T |
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| Q |
127 |
gaatttatgagaataatttgggaag |
151 |
Q |
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| ||| |||| |||||||||||| |
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| T |
5593271 |
ggattgctgagggtaatttgggaag |
5593247 |
T |
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