View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13386_high_4 (Length: 795)
Name: NF13386_high_4
Description: NF13386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13386_high_4 |
 | |
|
| [»] scaffold0018 (3 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 642; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 1 - 774
Target Start/End: Original strand, 44478765 - 44479539
Alignment:
| Q |
1 |
catgccttctcctactatcccaagtgtgatgtgctgatgaataatatatctgagtcttttaatgcaacaatcttgttagctagggacaaaccaatactaa |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44478765 |
catgccttctcctattatcccaagtgtgatgtgctgatgaataatatatctgagtcttttaatgcaacaatcttgttagctagggacaaaccaatactaa |
44478864 |
T |
|
| Q |
101 |
caatggctgagtggattagaacttatatcatgaataggataacaacccttagagagaaacttagtaaatgggaacaaaatatcatgcttatgcctaagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
44478865 |
caatggctgagtggattagaacttatattatgaataggatatcaagccttagagagaaacttagtaaatgggaacaaaatatcatgcctatgcctaagaa |
44478964 |
T |
|
| Q |
201 |
aagactgaatactgagatacaaaaggctggtaattggattgcaacttggggaaatgatgaggagtttgaggttgaaatgattggtggtgggcagagattt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44478965 |
aagactgaatactgagatacaaaaggctggtaattggattgcaacttggggaaatggtgaggagtttgaggttgaaatgattggtggtgggcagagattt |
44479064 |
T |
|
| Q |
301 |
actgtggacatgaggnnnnnnncttgtagttgtaatttttgggagcttgtaggtataccttgcagacatgctattgttgcaatgtctaagatggatcaaa |
400 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
44479065 |
actgtggacatggggaaaagaacttgtagttgtaatttttgggagctagtaggtataccttgcagacatgctattgttgcaatgtctaagacagaccaaa |
44479164 |
T |
|
| Q |
401 |
acccagagggctatgtttctgaatggtatactaggagcaagtatgaagcatgttataactttaatgtgagtgccataaatggtcaagatatgtggcctga |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44479165 |
acccagagggctatgtttctgaatggtatactaggagcaagtatgaagcatgttataacttcaatgtgagtgctataaatggtcaagatatgtggcctga |
44479264 |
T |
|
| Q |
501 |
agttgaatgtgaggagatgcttcctcctgtgtacaagaaaggaccaggaagacctaagaaactaaggaggagagagcctgatgagccagcaaaaacatgt |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44479265 |
agttgaatgtgaggagatgcttcctcctgtgtacatcaaaggaccaggaagacctaagaaactaaggaggagagagcctgatgagccagcaaaatcatgt |
44479364 |
T |
|
| Q |
601 |
gggaaatttagcagaggtgctagtaagtacaagtgcacaaaatgtggaagttgtggtcacaatgcaagaggttgtaaatgtcagacagtgaaccctgaag |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| ||| |||||||| ||||||| |||| |
|
|
| T |
44479365 |
gggaaatttagcagaggtgctagtaagtacaagtgcacaagatgtgggagttgtggtcacaatgctagaggttgcaaaagtcagacaatgaacccagaag |
44479464 |
T |
|
| Q |
701 |
cacaaaaaagaaaggtattttactgctgtcaaaatattgatc-atatttcttgtcagtttatttgtaactatatt |
774 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| | |||||||||| |
|
|
| T |
44479465 |
cacaaaaaagaaaggtattttacttctgtcaaaatattgatcaatatttcttgtcagtttatctctaactatatt |
44479539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 638; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 1 - 774
Target Start/End: Complemental strand, 21975413 - 21974639
Alignment:
| Q |
1 |
catgccttctcctactatcccaagtgtgatgtgctgatgaataatatatctgagtcttttaatgcaacaatcttgttagctagggacaaaccaatactaa |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21975413 |
catgccttctcctattatcccaagtgtgatgtgctgatgaataatatatctgagtcttttaatgcaacaatcttgttagctagggacaaaccaatactaa |
21975314 |
T |
|
| Q |
101 |
caatggctgagtggattagaacttatatcatgaataggataacaacccttagagagaaacttagtaaatgggaacaaaatatcatgcttatgcctaagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
21975313 |
caatggctgagtggattagaacttatattatgaataggatatcaagccttagagagaaacttagtaaatgggaacaaaatatcatgcctatgcctaagaa |
21975214 |
T |
|
| Q |
201 |
aagactgaatactgagatacaaaaggctggtaattggattgcaacttggggaaatgatgaggagtttgaggttgaaatgattggtggtgggcagagattt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21975213 |
aagactgaatactgagatacaaaaggctggtaattggattgcaacttggggaaatggtgaggagtttgaggttgaaatgattggtggtgggcagagattt |
21975114 |
T |
|
| Q |
301 |
actgtggacatgaggnnnnnnncttgtagttgtaatttttgggagcttgtaggtataccttgcagacatgctattgttgcaatgtctaagatggatcaaa |
400 |
Q |
| |
|
|||||| ||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
21975113 |
actgtgaacatggggaaaagaacttgtagttgtaatttttgggagctagtaggtataccttgcagacatgctattgttgcaatgtctaagacagaccaaa |
21975014 |
T |
|
| Q |
401 |
acccagagggctatgtttctgaatggtatactaggagcaagtatgaagcatgttataactttaatgtgagtgccataaatggtcaagatatgtggcctga |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
21975013 |
acccagagggctatgtttctgaatggtatactaggagcaagtatgaagcatgttataacttcaatgtgagtgctataaatggtcaagatatgtggcctga |
21974914 |
T |
|
| Q |
501 |
agttgaatgtgaggagatgcttcctcctgtgtacaagaaaggaccaggaagacctaagaaactaaggaggagagagcctgatgagccagcaaaaacatgt |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21974913 |
agttgaatgtgaggagatgcttcctcctgtgtacatcaaaggaccaggaagacctaagaaactaaggaggagagagcctgatgagccagcaaaatcatgt |
21974814 |
T |
|
| Q |
601 |
gggaaatttagcagaggtgctagtaagtacaagtgcacaaaatgtggaagttgtggtcacaatgcaagaggttgtaaatgtcagacagtgaaccctgaag |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| ||| |||||||| ||||||| |||| |
|
|
| T |
21974813 |
gggaaatttagcagaggtgctagtaagtacaagtgcacaagatgtgggagttgtggtcacaatgctagaggttgcaaaagtcagacaatgaacccagaag |
21974714 |
T |
|
| Q |
701 |
cacaaaaaagaaaggtattttactgctgtcaaaatattgatc-atatttcttgtcagtttatttgtaactatatt |
774 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| | |||||||||| |
|
|
| T |
21974713 |
cacaaaaaagaaaggtattttacttctgtcaaaatattgatcaatatttcttgtcagtttatctctaactatatt |
21974639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 412 - 774
Target Start/End: Complemental strand, 76026 - 75664
Alignment:
| Q |
412 |
tatgtttctgaatggtatactaggagcaagtatgaagcatgttataactttaatgtgagtgccataaatggtcaagatatgtggcctgaagttgaatgtg |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
76026 |
tatgtttctgaatggtatactaggagcaagtatgaagcatgttataactttaatgtgagtgctataaatggtcaagatatgtggcctgaagttaaatgtg |
75927 |
T |
|
| Q |
512 |
aggagatgcttcctcctgtgtacaagaaaggaccaggaagacctaagaaactaaggaggagagagcctgatgagccagcaaaaacatgtgggaaatttag |
611 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
75926 |
aggagatgcttcctcctttgtacaagaaaggaccaggaagacctaagaaactaaggaggagagagcctgatgagccagcaaaatcatgtgggaaatttag |
75827 |
T |
|
| Q |
612 |
cagaggtgctagtaagtacaagtgcacaaaatgtggaagttgtggtcacaatgcaagaggttgtaaatgtcagacagtgaaccctgaagcacaaaaaaga |
711 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
75826 |
cagaggtgctagtaagtacaagtgcacaacatgtgggagttgtggtcacaatgccagaggttgcaaaagtcagacagtgaaccctgaagcacaaaagaga |
75727 |
T |
|
| Q |
712 |
aaggtattttactgctgtcaaaatattgatcatatttcttgtcagtttatttgtaactatatt |
774 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
75726 |
aaggtattttacttctgtcaaaatattgatcatatttcttgtcagtttatctctaactatatt |
75664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 412 - 688
Target Start/End: Complemental strand, 76304 - 76028
Alignment:
| Q |
412 |
tatgtttctgaatggtatactaggagcaagtatgaagcatgttataactttaatgtgagtgccataaatggtcaagatatgtggcctgaagttgaatgtg |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
76304 |
tatgtttctgaatggtatactaggagcaagtatgaagcatgttataactttaatgtgagtgctataaatggtcaagatatgtggcctgaagttaaatgtg |
76205 |
T |
|
| Q |
512 |
aggagatgcttcctcctgtgtacaagaaaggaccaggaagacctaagaaactaaggaggagagagcctgatgagccagcaaaaacatgtgggaaatttag |
611 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
76204 |
aggagatgcttcctcctttgtacaagaaaggaccaggaagacctaagaaactaaggaggagagagcctgatgagccagcaaaatcatgtgggaaatttag |
76105 |
T |
|
| Q |
612 |
cagaggtgctagtaagtacaagtgcacaaaatgtggaagttgtggtcacaatgcaagaggttgtaaatgtcagacag |
688 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| || ||||||||||||| |||||||| ||| ||||||||| |
|
|
| T |
76104 |
cagaggtgctagtaagtacaagtgcacaacatgtgggagctgtggtcacaatggcagaggttgcaaaagtcagacag |
76028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 412 - 688
Target Start/End: Complemental strand, 76582 - 76306
Alignment:
| Q |
412 |
tatgtttctgaatggtatactaggagcaagtatgaagcatgttataactttaatgtgagtgccataaatggtcaagatatgtggcctgaagttgaatgtg |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
76582 |
tatgtttctgaatggtatactaggagcaagtatgaagcatgttataactttaatgtgagtgctataaatggtcaagatatgtggcctgaagttaaatgtg |
76483 |
T |
|
| Q |
512 |
aggagatgcttcctcctgtgtacaagaaaggaccaggaagacctaagaaactaaggaggagagagcctgatgagccagcaaaaacatgtgggaaatttag |
611 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
76482 |
aggagatgcttcctcctttgtacaagaaaggaccaggaagacctaagaaactaaggaggagagagcctgatgagccagcaaaatcatgtgggaaatttag |
76383 |
T |
|
| Q |
612 |
cagaggtgctagtaagtacaagtgcacaaaatgtggaagttgtggtcacaatgcaagaggttgtaaatgtcagacag |
688 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| || ||||||||||||| |||||||| ||| ||||||||| |
|
|
| T |
76382 |
cagaggtgctagtaagtacaagtgcacaacatgtgggagctgtggtcacaatggcagaggttgcaaaagtcagacag |
76306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 2e-30; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 16 - 585
Target Start/End: Original strand, 47735766 - 47736335
Alignment:
| Q |
16 |
tatcccaagtgtgatgtgctgatgaataatatatctgagtcttttaatgcaacaatcttgttagctagggacaaaccaatactaacaatggctgagtgga |
115 |
Q |
| |
|
||||| ||||||||||| | |||||||| || || ||| |||||||||| || || || |||||||| || || ||||| || |||||||| ||||||| |
|
|
| T |
47735766 |
tatcctaagtgtgatgtattaatgaataacatttcagaggcttttaatgctactatattattagctagagataagccaatcctcacaatggcagagtgga |
47735865 |
T |
|
| Q |
116 |
ttagaacttatatcatgaataggataacaacccttagagagaaacttagtaaatgggaacaaaatatcatgcttatgcctaagaaaagactgaatactga |
215 |
Q |
| |
|
||||||| || ||||||||||||| ||| ||||| | || | ||||| ||| || ||||||||| |||||| | ||||||| |||| ||||| |
|
|
| T |
47735866 |
ttagaacatacctcatgaataggatgtcaaaacttaggaataagttaagtaactggcaaggtgatatcatgcctatgccaaggaaaagattgaacactga |
47735965 |
T |
|
| Q |
216 |
gatacaaaaggctggtaattggattgcaacttggggaaatgatgaggagtttgaggttgaaatgattggtggtgggcagagatttactgtggacatgagg |
315 |
Q |
| |
|
||| |||| |||| || | ||| ||||||||||||| | ||| |||||||||||||||||| | |||||||| || ||||||||||| ||| |
|
|
| T |
47735966 |
gattcaaagatctggaaactagatagcaacttggggaataggtgatgagtttgaggttgaaatggtgggtggtggacatagatttactgtaaacactgca |
47736065 |
T |
|
| Q |
316 |
nnnnnnncttgtagttgtaatttttgggagcttgtaggtataccttgcagacatgctattgttgcaatgtctaagatggatcaaaacccagagggctatg |
415 |
Q |
| |
|
| ||||||||||||||||||||| | |||||||||||||| || ||||| ||| || || ||||| ||| || ||||| | ||||| |
|
|
| T |
47736066 |
aataggacatgtagttgtaatttttgggagttggtaggtataccttgtaggcatgcagttgcagccataggtaagagagatggaaggccagaagactatg |
47736165 |
T |
|
| Q |
416 |
tttctgaatggtatactaggagcaagtatgaagcatgttataactttaatgtgagtgccataaatggtcaagatatgtggcctgaagttgaatgtgagga |
515 |
Q |
| |
|
| ||| || ||| |||| | | |||||||||||| | ||| ||||||||||||||| ||||| ||||||||||||||||| || ||||||||||| |
|
|
| T |
47736166 |
tccatgagtgttattctagaaagacatatgaagcatgtaacaaccataatgtgagtgccattaatggacaagatatgtggcctgaggtggaatgtgagga |
47736265 |
T |
|
| Q |
516 |
gatgcttcctcctgtgtacaagaaaggaccaggaagacctaagaaactaaggaggagagagcctgatgag |
585 |
Q |
| |
|
||||||||| || || || ||||| || || ||||| ||||| || |||||||| ||||||| |||| |
|
|
| T |
47736266 |
gatgcttccaccaacttataaaaaagggcctgggagaccaaagaagcttaggaggagggagcctggtgag |
47736335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 13047690 - 13047587
Alignment:
| Q |
37 |
atgaataatatatctgagtcttttaatgcaacaatcttgttagctagggacaaaccaatactaacaatggctgagtggattagaacttatatcatgaata |
136 |
Q |
| |
|
||||| || |||||||| ||||||||| ||||||| || | ||||| |||||||||||||| || |||||||| ||||||||||| ||| | ||||||| |
|
|
| T |
13047690 |
atgaacaacatatctgaatcttttaattcaacaatattagttgctagagacaaaccaatacttaccatggctgaatggattagaacatatttaatgaata |
13047591 |
T |
|
| Q |
137 |
ggat |
140 |
Q |
| |
|
|||| |
|
|
| T |
13047590 |
ggat |
13047587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 450 - 584
Target Start/End: Original strand, 37876506 - 37876640
Alignment:
| Q |
450 |
atgttataactttaatgtgagtgccataaatggtcaagatatgtggcctgaagttgaatgtgaggagatgcttcctcctgtgtacaagaaaggaccagga |
549 |
Q |
| |
|
|||||||| ||||||||| ||||| || ||||| ||||| |||||||| | |||||| || || ||||||||||| ||||||||||| |||||| |
|
|
| T |
37876506 |
atgttatagctttaatgttagtgcaatcaatggacaagacatgtggccaaatgttgaagtggaagatatgcttcctccaacctacaagaaaggtccagga |
37876605 |
T |
|
| Q |
550 |
agacctaagaaactaaggaggagagagcctgatga |
584 |
Q |
| |
|
||||| ||||| ||||| ||||| || |||||||| |
|
|
| T |
37876606 |
agaccaaagaagctaagaaggagggaacctgatga |
37876640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 554
Target Start/End: Complemental strand, 34796593 - 34796502
Alignment:
| Q |
463 |
aatgtgagtgccataaatggtcaagatatgtggcctgaagttgaatgtgaggagatgcttcctcctgtgtacaagaaaggaccaggaagacc |
554 |
Q |
| |
|
||||| ||||| || ||||||||||| |||||||| || ||||||||||||||| || | ||||||| || || || || ||||||||||| |
|
|
| T |
34796593 |
aatgtaagtgctatcaatggtcaagacatgtggccagaggttgaatgtgaggagttgttacctcctgcttataaaaagggtccaggaagacc |
34796502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 140
Target Start/End: Complemental strand, 34796999 - 34796917
Alignment:
| Q |
58 |
tttaatgcaacaatcttgttagctagggacaaaccaatactaacaatggctgagtggattagaacttatatcatgaataggat |
140 |
Q |
| |
|
|||||| ||||||| || | ||||| |||||||||||||| || |||||||| || |||||||| ||| | ||||||||||| |
|
|
| T |
34796999 |
tttaattcaacaatattagttgctagagacaaaccaatacttaccatggctgaatgaattagaacatatttaatgaataggat |
34796917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 4e-25; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 442 - 585
Target Start/End: Complemental strand, 41770530 - 41770387
Alignment:
| Q |
442 |
tatgaagcatgttataactttaatgtgagtgccataaatggtcaagatatgtggcctgaagttgaatgtgaggagatgcttcctcctgtgtacaagaaag |
541 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||| ||||| ||||||||||||||||| || |||||||||||||||||||| || | || || |||| |
|
|
| T |
41770530 |
tatgaagcatgttacaaccataatgtgagtgccattaatgggcaagatatgtggcctgaggtggaatgtgaggagatgcttccaccaatttataaaaaag |
41770431 |
T |
|
| Q |
542 |
gaccaggaagacctaagaaactaaggaggagagagcctgatgag |
585 |
Q |
| |
|
| || || ||||| ||||| || |||||||| ||||||| |||| |
|
|
| T |
41770430 |
ggcctgggagaccaaagaagctgaggaggagggagcctggtgag |
41770387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 290
Target Start/End: Complemental strand, 41770956 - 41770682
Alignment:
| Q |
16 |
tatcccaagtgtgatgtgctgatgaataatatatctgagtcttttaatgcaacaatcttgttagctagggacaaaccaatactaacaatggctgagtgga |
115 |
Q |
| |
|
||||| ||||||||||| | |||||||| || || ||| | |||||||| || || || |||||||| || || ||||| || |||||||| |||||| |
|
|
| T |
41770956 |
tatcctaagtgtgatgtattaatgaataacatttcagaggcatttaatgctactatattattagctagagataagccaatcctcacaatggcaaagtgga |
41770857 |
T |
|
| Q |
116 |
ttagaacttatatcatgaataggataacaacccttagagagaaacttagtaaatgggaacaaaatatcatgcttatgcctaagaaaagactgaatactga |
215 |
Q |
| |
|
||||||| || ||||||||||||| ||| ||||| | || | ||||| ||| || ||||||||| |||||| | ||||||| |||| ||||| |
|
|
| T |
41770856 |
ttagaacatacctcatgaataggatgtcaaaacttaggaataagttaagtaactggcaaggtgatatcatgcctatgccaaggaaaagattgaacactga |
41770757 |
T |
|
| Q |
216 |
gatacaaaaggctggtaattggattgcaacttggggaaatgatgaggagtttgaggttgaaatgattggtggtgg |
290 |
Q |
| |
|
||| || || |||| || ||||| ||||| ||||||| | ||| |||||||||||||||||| | |||||||| |
|
|
| T |
41770756 |
gattcagaaatctggaaactggatagcaacatggggaataggtgatgagtttgaggttgaaatggtgggtggtgg |
41770682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 7308945 - 7309075
Alignment:
| Q |
10 |
tcctactatcccaagtgtgatgtgctgatgaataatatatctgagtcttttaatgcaacaatcttgttagctagggacaaaccaatactaacaatggctg |
109 |
Q |
| |
|
||||| ||||| || |||||||| | ||||| || |||||||| | |||||| ||||||| || | ||||| |||||||||||||| || ||||||| |
|
|
| T |
7308945 |
tcctattatcctaaatgtgatgtcttaatgaacaacatatctgaagcatttaattcaacaatattagttgctagagacaaaccaatacttaccatggctg |
7309044 |
T |
|
| Q |
110 |
agtggattagaacttatatcatgaataggat |
140 |
Q |
| |
|
| ||||||||||| ||| | ||||||||||| |
|
|
| T |
7309045 |
aatggattagaacatatttaatgaataggat |
7309075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 3920849 - 3920800
Alignment:
| Q |
22 |
aagtgtgatgtgctgatgaataatatatctgagtcttttaatgcaacaat |
71 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| || |||||||| ||||| |
|
|
| T |
3920849 |
aagtgtgatgtactgatgaataacatatctgaatcctttaatgccacaat |
3920800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 4e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 442 - 585
Target Start/End: Original strand, 35599648 - 35599791
Alignment:
| Q |
442 |
tatgaagcatgttataactttaatgtgagtgccataaatggtcaagatatgtggcctgaagttgaatgtgaggagatgcttcctcctgtgtacaagaaag |
541 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||| ||||| ||||||||||||||||| || |||||||||||||||||||| || | || || |||| |
|
|
| T |
35599648 |
tatgaagcatgttacaaccataatgtgagtgccattaatgggcaagatatgtggcctgaggtggaatgtgaggagatgcttccaccaatttataaaaaag |
35599747 |
T |
|
| Q |
542 |
gaccaggaagacctaagaaactaaggaggagagagcctgatgag |
585 |
Q |
| |
|
| || || ||||| ||||| || |||||||| ||||||| |||| |
|
|
| T |
35599748 |
ggcctgggagaccaaagaagctgaggaggagggagcctggtgag |
35599791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 290
Target Start/End: Original strand, 35599222 - 35599496
Alignment:
| Q |
16 |
tatcccaagtgtgatgtgctgatgaataatatatctgagtcttttaatgcaacaatcttgttagctagggacaaaccaatactaacaatggctgagtgga |
115 |
Q |
| |
|
||||| ||||||||||| | |||||||| || || ||| | |||||||| || || || |||||||| || || ||| | || |||||||| |||||| |
|
|
| T |
35599222 |
tatcctaagtgtgatgtattaatgaataacatttcagaggcatttaatgctactatattattagctagagataagccagtcctcacaatggcaaagtgga |
35599321 |
T |
|
| Q |
116 |
ttagaacttatatcatgaataggataacaacccttagagagaaacttagtaaatgggaacaaaatatcatgcttatgcctaagaaaagactgaatactga |
215 |
Q |
| |
|
||||||| || ||||||||||||| ||| ||||| | || | ||||| ||| || ||||||||| |||||| | ||||||| |||| ||||| |
|
|
| T |
35599322 |
ttagaacatacctcatgaataggatgtcaaaacttaggaataagttaagtaactggcaaggtgatatcatgcctatgccaaggaaaagattgaacactga |
35599421 |
T |
|
| Q |
216 |
gatacaaaaggctggtaattggattgcaacttggggaaatgatgaggagtttgaggttgaaatgattggtggtgg |
290 |
Q |
| |
|
||| || || |||| || ||||| ||||| ||||||| | ||| |||||||||||||||||| | |||||||| |
|
|
| T |
35599422 |
gattcagaaatctggaaactggatagcaacatggggaataggtgatgagtttgaggttgaaatggtgggtggtgg |
35599496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 16 - 585
Target Start/End: Complemental strand, 13649428 - 13648859
Alignment:
| Q |
16 |
tatcccaagtgtgatgtgctgatgaataatatatctgagtcttttaatgcaacaatcttgttagctagggacaaaccaatactaacaatggctgagtgga |
115 |
Q |
| |
|
||||| ||||||||||| | |||||||| || || ||| |||||||||| || || || |||||||| || || ||| | || |||||||| |||||| |
|
|
| T |
13649428 |
tatcctaagtgtgatgtattaatgaataacatttcagaggcttttaatgctactatattattagctagagataagccattcctcacaatggcatagtgga |
13649329 |
T |
|
| Q |
116 |
ttagaacttatatcatgaataggataacaacccttagagagaaacttagtaaatgggaacaaaatatcatgcttatgcctaagaaaagactgaatactga |
215 |
Q |
| |
|
||||||| || ||||||||||||| ||| ||||| | || | ||||| ||| || ||||||||| |||||| | ||||||| |||| ||||| |
|
|
| T |
13649328 |
ttagaacatacctcatgaataggatgtcaaaacttaggaataagttaagtaactggcaaggtgatatcatgcctatgccaaggaaaagattgaacactga |
13649229 |
T |
|
| Q |
216 |
gatacaaaaggctggtaattggattgcaacttggggaaatgatgaggagtttgaggttgaaatgattggtggtgggcagagatttactgtggacatgagg |
315 |
Q |
| |
|
||| |||| |||| || | ||| ||||||||||||| | ||| |||||||||||||||||| | |||||||| || || |||||||| ||| |
|
|
| T |
13649228 |
gattcaaagatctggaaacttgatagcaacttggggaataggtgatgagtttgaggttgaaatggtgggtggtggacatagttttactgtaaacactgca |
13649129 |
T |
|
| Q |
316 |
nnnnnnncttgtagttgtaatttttgggagcttgtaggtataccttgcagacatgctattgttgcaatgtctaagatggatcaaaacccagagggctatg |
415 |
Q |
| |
|
| ||||||||||||||||||||| | |||||||||||||| || ||||| ||| || || ||||| ||| || ||||| | ||||| |
|
|
| T |
13649128 |
aataggacatgtagttgtaatttttgggagttggtaggtataccttgtaggcatgcagttgcagccataggtaagagagatggaaggccagaagactatg |
13649029 |
T |
|
| Q |
416 |
tttctgaatggtatactaggagcaagtatgaagcatgttataactttaatgtgagtgccataaatggtcaagatatgtggcctgaagttgaatgtgagga |
515 |
Q |
| |
|
| ||| || ||| |||| | | |||||||||||| | ||| ||||||||||||||| ||||| ||||||||||||||||| || ||||||||||| |
|
|
| T |
13649028 |
tccatgagtgttattctagaaagacatatgaagcatgtaacaaccataatgtgagtgccattaatggacaagatatgtggcctgaggtggaatgtgagga |
13648929 |
T |
|
| Q |
516 |
gatgcttcctcctgtgtacaagaaaggaccaggaagacctaagaaactaaggaggagagagcctgatgag |
585 |
Q |
| |
|
||||||||| || || || ||||| || || ||||| ||||| || |||||||| ||||||| |||| |
|
|
| T |
13648928 |
gatgcttccaccaacttataaaaaagggcctgggagaccaaagaagcttaggaggagggagcctggtgag |
13648859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 22370462 - 22370359
Alignment:
| Q |
37 |
atgaataatatatctgagtcttttaatgcaacaatcttgttagctagggacaaaccaatactaacaatggctgagtggattagaacttatatcatgaata |
136 |
Q |
| |
|
||||| || |||||||| | |||||| ||||||| ||| | ||||| |||||||||||||| || |||||||| ||||||||||| ||| | ||||||| |
|
|
| T |
22370462 |
atgaacaacatatctgaagcctttaattcaacaatattggttgctagagacaaaccaatactgaccatggctgaatggattagaacatatttaatgaata |
22370363 |
T |
|
| Q |
137 |
ggat |
140 |
Q |
| |
|
|||| |
|
|
| T |
22370362 |
ggat |
22370359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 463 - 584
Target Start/End: Complemental strand, 22370035 - 22369914
Alignment:
| Q |
463 |
aatgtgagtgccataaatggtcaagatatgtggcctgaagttgaatgtgaggagatgcttcctcctgtgtacaagaaaggaccaggaagacctaagaaac |
562 |
Q |
| |
|
||||||||||| || ||||||||||| |||||||| || || |||||||| || ||| | ||||||| || ||||| | |||||||||||| || || | |
|
|
| T |
22370035 |
aatgtgagtgctatcaatggtcaagacatgtggccagaggtagaatgtgaagaaatgttacctcctgcttataagaaggcaccaggaagaccaaaaaagc |
22369936 |
T |
|
| Q |
563 |
taaggaggagagagcctgatga |
584 |
Q |
| |
|
| || || ||||| |||||||| |
|
|
| T |
22369935 |
ttagaagaagagaacctgatga |
22369914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 51016697 - 51016776
Alignment:
| Q |
58 |
tttaatgcaacaatcttgttagctagggacaaaccaatactaacaatggctgagtggattagaacttatatcatgaatag |
137 |
Q |
| |
|
|||||| ||||||| || | ||||| |||||||||||||| || |||||||| ||||||||||| ||| | |||||||| |
|
|
| T |
51016697 |
tttaattcaacaatattagttgctagagacaaaccaatacttaccatggctgaatggattagaacatatttaatgaatag |
51016776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 554
Target Start/End: Original strand, 51017102 - 51017193
Alignment:
| Q |
463 |
aatgtgagtgccataaatggtcaagatatgtggcctgaagttgaatgtgaggagatgcttcctcctgtgtacaagaaaggaccaggaagacc |
554 |
Q |
| |
|
||||| ||||| || ||||||||||| |||||||| || ||||||||||||||| || | ||||||| || || || || ||||||||||| |
|
|
| T |
51017102 |
aatgtaagtgctatcaatggtcaagacatgtggccagaggttgaatgtgaggagttgttacctcctgcttataaaaagggtccaggaagacc |
51017193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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