View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13386_high_8 (Length: 613)
Name: NF13386_high_8
Description: NF13386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13386_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 536; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 13 - 597
Target Start/End: Complemental strand, 43255951 - 43255367
Alignment:
| Q |
13 |
cacagaagactccaagattggtacaatcctggttccatgggaaaacaatacttcttaggacttgagaaagggcttggaggttccggcgaaccagcatacc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43255951 |
cacagaagactccaagattggtacaatcctggttccatgggaaaacaatacttcttaggacttgagaaagggcttggaggttccggcgaaccagcatacc |
43255852 |
T |
|
| Q |
113 |
ctggtggacctatatttaaccctcttggttttggtaaagatgagaaatcattgaaagaattaaagctgaaggaagttaagaatggaagattagctatgtt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
43255851 |
ctggtggacctatatttaaccctcttggttttggtaaagatgagaaatcattgaaagaattaaagctgaaggaagttaagaatggaaggttagcaatgtt |
43255752 |
T |
|
| Q |
213 |
ggcaatattgggttactttattcaagctcttgttacaggagttggaccataccaaaacctcttagatcatttggctgaccctgtcaacaacaacatcttg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43255751 |
ggcaatattgggttactttattcaagctcttgttacaggagttggaccataccaaaacctcttagatcatttggctgaccctgtcaacaacaacatcttg |
43255652 |
T |
|
| Q |
313 |
accagtctcaagttccactaaatgaatgtattatatatatgctcttttcttttctttgctcttgttggttgctgtaagttataattattaccnnnnnnnc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
43255651 |
accagtctcaagttccactaaatgaatgtattatatatatgctcctttattttctttgctcttgttggttgttgtaagttataattattaccaaaaaaac |
43255552 |
T |
|
| Q |
413 |
tcaaccaccttttcttcactttcttgtcttggcatcctgtgagcatgtttcatgatatggccttgtaagaaatgacatttacaagaactagaataattca |
512 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43255551 |
tcaaccaccttttcttcactttcttgtcttagcatcctgtgagcatgtttcatgatgtggccttgtaagaaatgacatttacaagaactagaataattca |
43255452 |
T |
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| Q |
513 |
gcatctttgtgtgttaacttctttgttgcaccccttccttaatggaagttttccctttctcatgaaaggttccttttgttacttg |
597 |
Q |
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| T |
43255451 |
gcatctttgtgtgttaacttctttgttgcaccccttccttaatggaagttttccctttctcatgaaaggttccttttgttacttg |
43255367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 13 - 542
Target Start/End: Complemental strand, 43259217 - 43258688
Alignment:
| Q |
13 |
cacagaagactccaagattggtacaatcctggttccatgggaaaacaatacttcttaggacttgagaaagggcttggaggttccggcgaaccagcatacc |
112 |
Q |
| |
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||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43259217 |
cacagaagattccaagattggtacaatcctggctccatgggaaaacaatacttcttaggacttgagaaagggcttggaggttccggcgaaccagcatacc |
43259118 |
T |
|
| Q |
113 |
ctggtggacctatatttaaccctcttggttttggtaaagatgagaaatcattgaaagaattaaagctgaaggaagttaagaatggaagattagctatgtt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
43259117 |
ctggtggacctatatttaaccctcttggttttggtaaagatgagaaatcattgaaggaattaaagctgaaggaagttaagaatggaaggttagcaatgtt |
43259018 |
T |
|
| Q |
213 |
ggcaatattgggttactttattcaagctcttgttacaggagttggaccataccaaaacctcttagatcatttggctgaccctgtcaacaacaacatcttg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43259017 |
ggcaatattgggttactttattcaagctcttgttacaggagttggaccataccaaaacctcttagatcatttggctgaccctgtcaacaacaacatcttg |
43258918 |
T |
|
| Q |
313 |
accagtctcaagttccactaaatgaatgtattatatatatgctcttttcttttctttgctcttgttggttgctgtaagttataattattaccnnnnnnnc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
43258917 |
accagtctcaagttccactaaatgaatgtattatatatatgctcctttattttctttgctcttgttggttgttgtaagttataattattaccaaaaaaac |
43258818 |
T |
|
| Q |
413 |
tcaaccaccttttcttcactttcttgtcttggcatcctgtgagcatgtttcatgatatggccttgtaagaaatgacatttacaagaactagaataattca |
512 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43258817 |
tcaaccaccttttcttcactttcttgtcttagcatcttgtgagcatgtttcatgatgtggccttgtaagaaatgacatttacaagaactagaaatattca |
43258718 |
T |
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| Q |
513 |
gcatctttgtgtgttaacttctttgttgca |
542 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
43258717 |
gcatctttgtgtgttaacttctttgttgca |
43258688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 49 - 352
Target Start/End: Complemental strand, 43247918 - 43247615
Alignment:
| Q |
49 |
atgggaaaacaatacttcttaggacttgagaaagggcttggaggttccggcgaaccagcataccctggtggacctatatttaaccctcttggttttggta |
148 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43247918 |
atgggaaaacaatactttttaggacttgagaaaggtcttggcggttccggtgaaccagcataccctggtggacctatatttaaccctcttggttttggta |
43247819 |
T |
|
| Q |
149 |
aagatgagaaatcattgaaagaattaaagctgaaggaagttaagaatggaagattagctatgttggcaatattgggttactttattcaagctcttgttac |
248 |
Q |
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||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
43247818 |
aagatgagaaatcattgaaggatttaaagctgaaggaagttaagaatggaaggttagctatgttggcaatattgggttactttgttcaagctctagttac |
43247719 |
T |
|
| Q |
249 |
aggagttggaccataccaaaacctcttagatcatttggctgaccctgtcaacaacaacatcttgaccagtctcaagttccactaaatgaatgtattatat |
348 |
Q |
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| |||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43247718 |
aagagttggaccataccaaaacttcttaaatcatttggctgacccttcaaacaacaacatcttgaccagtctcaagttccactaaatgaatgtattatat |
43247619 |
T |
|
| Q |
349 |
atat |
352 |
Q |
| |
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|||| |
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| T |
43247618 |
atat |
43247615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 216 - 311
Target Start/End: Complemental strand, 43234059 - 43233964
Alignment:
| Q |
216 |
aatattgggttactttattcaagctcttgttacaggagttggaccataccaaaacctcttagatcatttggctgaccctgtcaacaacaacatctt |
311 |
Q |
| |
|
|||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
43234059 |
aatactgggtgactttgttcaatctcttgttacaggagttggaccataccaaaacctcttggatcatttggctgaccctttcaacaacaacatctt |
43233964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 298 - 352
Target Start/End: Complemental strand, 43254144 - 43254090
Alignment:
| Q |
298 |
aacaacaacatcttgaccagtctcaagttccactaaatgaatgtattatatatat |
352 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43254144 |
aacaacaacatcttgaccagtctcaagttccactaaatgaatgtattatatatat |
43254090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 480 - 542
Target Start/End: Complemental strand, 43226066 - 43226006
Alignment:
| Q |
480 |
agaaatgacatttacaagaactagaataattcagcatctttgtgtgttaacttctttgttgca |
542 |
Q |
| |
|
||||||||||| |||||||||||||| |||| | |||| |||||||||||||||||||||| |
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|
| T |
43226066 |
agaaatgacatgtacaagaactagaaatattcggtatct--gtgtgttaacttctttgttgca |
43226006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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