View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13386_low_10 (Length: 614)
Name: NF13386_low_10
Description: NF13386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13386_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 521; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 67 - 595
Target Start/End: Complemental strand, 40145865 - 40145337
Alignment:
| Q |
67 |
gagaaactcaaactaaggaattaatgagattaaaaacttattttatatatctaatatgtgtgttgtgtataaattgtttttaaaaacaacacctaaactt |
166 |
Q |
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| T |
40145865 |
gagaaactcaaactaaggaattaatgagattaaaaacatattttatatatctaatatgtgtgttgtgtataaattgtttttaaaaacaacacctaaactt |
40145766 |
T |
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| Q |
167 |
gaattttattcaaaggcgtggcttgttcttctgcacatgtagtatgtcaatcagataccgaatcaaattggcatgcctttcaaaattgtgcggacagcgt |
266 |
Q |
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| T |
40145765 |
gaattttattcaaaggcgtggcttgttcttctgcacatgtagtatgtcaatcagataccgaatcaaattggcatgcctttcaaaattgtgcggacagcgt |
40145666 |
T |
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| Q |
267 |
tgcatgttgtagaaggttttgatgatgtttacaatggattctgaagtatattatcctagaacaaatcacaaatgtgtttctttgcgataacttcttgaag |
366 |
Q |
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| T |
40145665 |
tgcatgttgtagaaggttttgatgatgtttacaatggattctgaagtatattatcctagaacaaatcacaaatgtgtttctttgcgataacttcttgaag |
40145566 |
T |
|
| Q |
367 |
cattagtatctagatactgtgttttacactctctttccatttgatgatgctgaagaatccataaatcccaacatatagaccaattctttgacttgtataa |
466 |
Q |
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| T |
40145565 |
cattagtatctagatactgtgttttacactctctttccatttgatgatgctgaagaatccataaatcccaacatatagaccaattctttgacttgtataa |
40145466 |
T |
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| Q |
467 |
aatcacatgtataagagtcatttgtagggtggaatagagtagatgatgttgaggttgacaacgatcactgataacatagaactcaaaatgaaattccaaa |
566 |
Q |
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| T |
40145465 |
aatcacatgtataagagtcatttgtagggtggaatagagaagatgatgttgaggttgacaacgatcactgataacatagaactcaaaatgaaattccaaa |
40145366 |
T |
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| Q |
567 |
aggccaagtatttgtggggctaatcaaaa |
595 |
Q |
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| T |
40145365 |
aggccaagtatttgtggggctaatcaaaa |
40145337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 40145921 - 40145889
Alignment:
| Q |
12 |
agagacgacgagtgagttcttttggttacacaa |
44 |
Q |
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| T |
40145921 |
agagacgacgagtgagttattttggttacacaa |
40145889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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