View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13386_low_14 (Length: 559)
Name: NF13386_low_14
Description: NF13386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13386_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 470; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 9 - 544
Target Start/End: Original strand, 34007528 - 34008057
Alignment:
| Q |
9 |
agcataggcataacagcgaacttcatttgtccgaggttgcaatgtaatccatttttctcaccacatgaaaagtaataaggcttccatttgtttaacacga |
108 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34007528 |
agcattggcataacagcgaacttcatttgtccgacgttgcaatgtaatccatttttctcaccacatgaaaagtaataaggcttccacttgtttaacacga |
34007627 |
T |
|
| Q |
109 |
acttgaatccctctccaacaccttgtgtgtgatttgccaccatcttagccttcttcacatcacatttcatgaagctttcccaagttggaaacatgtatac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34007628 |
acttgaatccctctccaacaccttgtgtgtgatttgccaccatcttagccttcttcacatcacatttcatgaagctttgccaagttggaaacatgtatac |
34007727 |
T |
|
| Q |
209 |
gctgtgtgggaaacttgttgcatttggagcatcatacttgaaaactacacatgcataaatatcaaatatcaacattatataagattcatgccgtaagtac |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34007728 |
gctgtgtgggaaacttgttgcatttggagcatcatacttgaaaactacacatgcataaatatcaaatatcaacattatataagattcatgccgtaagtac |
34007827 |
T |
|
| Q |
309 |
tatcgaattgtgaaatgctaaatgaacattgccacattggagtatatgttagggtttactagtgtataaatattaaatttataaaataatatgtatgcct |
408 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34007828 |
aatcgaattgtgaaatgctaaat--------caacattggagtatatgttagggtttactagtgtataaatattaaatttataaaataatatgtatgcct |
34007919 |
T |
|
| Q |
409 |
caataatttatgattaatcttgaccaatggagtttataattta--ttataaataataaagggaagcttaccgagagtatcattgaggtaaaaaggaccat |
506 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34007920 |
caataatttatgattaatcttgaccaatggagtttataatttattttataaataataaagggaagcttaccgagagtatcattgaggtaaaaaggaccat |
34008019 |
T |
|
| Q |
507 |
tcttaatagcccaatcagagtaattatagccaaagtgc |
544 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |
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|
| T |
34008020 |
tcttaatagcccaatcagagtagttatagccaaagtgc |
34008057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 9 - 339
Target Start/End: Original strand, 33999749 - 34000079
Alignment:
| Q |
9 |
agcataggcataacagcgaacttcatttgtccgaggttgcaatgtaatccatttttctcaccacatgaaaagtaataaggcttccatttgtttaacacga |
108 |
Q |
| |
|
||||| |||||||| | |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33999749 |
agcattggcataaccgtaaacttcatttgtccaacgttgcaatgtaatccatttttctcaccacatgaaaagtaataaggcttccatttgtttaacacga |
33999848 |
T |
|
| Q |
109 |
acttgaatccctctccaacaccttgtgtgtgatttgccaccatcttagccttcttcacatcacatttcatgaagctttcccaagttggaaacatgtatac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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|
| T |
33999849 |
acttgaatccctctccaacaccttgtgtgtgatttgccaccatcttagccttcttcacatcacatttcatgaagctctgccaagttggaaacatgtatac |
33999948 |
T |
|
| Q |
209 |
gctgtgtgggaaacttgttgcatttggagcatcatacttgaaaactacacatgcataaatatcaaatatcaacattatataagattcatgccgtaagtac |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33999949 |
actgtgtgggaaacttgttgcatttggagcatcatacttgaaaactacacatgcataaatatcaaatatcaacattatataagattcatgccgtaagtac |
34000048 |
T |
|
| Q |
309 |
tatcgaattgtgaaatgctaaatgaacattg |
339 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |
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|
| T |
34000049 |
aatcgaattgtaaaatgctaaatgaacattg |
34000079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 15 - 334
Target Start/End: Original strand, 33994992 - 33995312
Alignment:
| Q |
15 |
ggcataacagcgaacttcatttgtccgaggttgcaatgtaatccatttttctcaccacatgaaaagtaataaggcttccatttgtttaacacgaacttga |
114 |
Q |
| |
|
||||||| ||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33994992 |
ggcataatagcaaacttcatttgtccaacgttgcaatgtaatccatttttctcaccacatgaaaagtaataaggcttccatttgtttaacacgaacttga |
33995091 |
T |
|
| Q |
115 |
atccctctccaacaccttgtgtgtgatttgccaccatcttagccttcttcacatcacatttcatgaagctttcccaagttggaaacatgtatacgctgtg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
33995092 |
atccctctccaacaccttgtgtgtgatttgccaccatcttagccttcttcacatcacatttcatgaagctttgccaagttggaaacatgtatacgctgtg |
33995191 |
T |
|
| Q |
215 |
tgggaaacttgttgcatttggagcatcatacttgaaaactacacatgcataaatatcaaatatcaacattatataa-gattcatgccgtaagtactatcg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||| ||| | |||||||||| ||| |
|
|
| T |
33995192 |
tgggaaacttgttgcatttggagcatcatatttgaaaactacacatggataaatatcaaatatcaacatcatataataatttgtcccgtaagtacaatca |
33995291 |
T |
|
| Q |
314 |
aattgtgaaatgctaaatgaa |
334 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
33995292 |
aattgtaaaatgctaaatgaa |
33995312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 273
Target Start/End: Original strand, 34003117 - 34003381
Alignment:
| Q |
9 |
agcataggcataacagcgaacttcatttgtccgaggttgcaatgtaatccatttttctcaccacatgaaaagtaataaggcttccatttgtttaacacga |
108 |
Q |
| |
|
||||| |||||||| | |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
34003117 |
agcattggcataaccgtaaacttcatttgtccaacgttgcaatgtaatccatttttctcaccacatgaaaagtaataaggcttccacttgtttaacacga |
34003216 |
T |
|
| Q |
109 |
acttgaatccctctccaacaccttgtgtgtgatttgccaccatcttagccttcttcacatcacatttcatgaagctttcccaagttggaaacatgtatac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
34003217 |
acttgaatccctctccaacaccttgtgtgtgatttgccaccatcttagccttcttcacatcacatttcatgaagctctgccaagttggaaacatgtatac |
34003316 |
T |
|
| Q |
209 |
gctgtgtgggaaacttgttgcatttggagcatcatacttgaaaactacacatgcataaatatcaa |
273 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34003317 |
gctgtgtgggaaactcgtcgcatttggagcatcatatttgaaaactacacatgcataaatatcaa |
34003381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 15 - 266
Target Start/End: Original strand, 33989002 - 33989253
Alignment:
| Q |
15 |
ggcataacagcgaacttcatttgtccgaggttgcaatgtaatccatttttctcaccacatgaaaagtaataaggcttccatttgtttaacacgaacttga |
114 |
Q |
| |
|
||||||| ||| |||||||||||||| | |||||||| || | ||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
33989002 |
ggcataatagcaaacttcatttgtccaacattgcaatgcaacctatttttctcaccacatgcaaagtaatagggcttccacttgtttaacacgaacttga |
33989101 |
T |
|
| Q |
115 |
atccctctccaacaccttgtgtgtgatttgccaccatcttagccttcttcacatcacatttcatgaagctttcccaagttggaaacatgtatacgctgtg |
214 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |||||||||| | || | |||||||||||||||||| | |||||||||||||||||||||| |||| |
|
|
| T |
33989102 |
acccctctccaacaccttgtgtgtgatttgccaacatcttagccattttaagatcacatttcatgaagctctgccaagttggaaacatgtatacgttgtg |
33989201 |
T |
|
| Q |
215 |
tgggaaacttgttgcatttggagcatcatacttgaaaactacacatgcataa |
266 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
33989202 |
tgggaaactctttgcatttggagcatcatatttgaaaactacacatggataa |
33989253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 342 - 544
Target Start/End: Original strand, 34003407 - 34003592
Alignment:
| Q |
342 |
acattggagtatatgttagggtttactagtgtataaatattaaatttataaaataatatgtatgcctcaataatttatgattaatcttgaccaatggagt |
441 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||||| |
|
|
| T |
34003407 |
acattggagtatatgttagggcttactagtgtattaatattaaatttataaaataatatatatgcctcaataatttat---taagtttgacaaatggagt |
34003503 |
T |
|
| Q |
442 |
ttataatttattataaataataaagggaagcttaccgagagtatcattgaggtaaaaaggaccattcttaatagcccaatcagagtaattatagccaaag |
541 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
34003504 |
ttataa--------------taaagggaagcttaccaagagtatcattgaggtaaaaaggaccattcttgatagcccaatcagagtagttatagccaaag |
34003589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 470 - 544
Target Start/End: Original strand, 34000093 - 34000167
Alignment:
| Q |
470 |
agcttaccgagagtatcattgaggtaaaaaggaccattcttaatagcccaatcagagtaattatagccaaagtgc |
544 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
34000093 |
agcttaccgagggtatcattgaggtaaaaaggaccattcttgatagcccaatcagagtagttatagccaaagtgc |
34000167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 458 - 544
Target Start/End: Original strand, 33993355 - 33993441
Alignment:
| Q |
458 |
ataataaagggaagcttaccgagagtatcattgaggtaaaaaggaccattcttaatagcccaatcagagtaattatagccaaagtgc |
544 |
Q |
| |
|
||||||||| ||| | ||||||||||||| ||||||||||||||||||||||||||||| |||||||| || || |||||||||||| |
|
|
| T |
33993355 |
ataataaagtgaaccataccgagagtatcgttgaggtaaaaaggaccattcttaatagctcaatcagaatagttgtagccaaagtgc |
33993441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 447 - 540
Target Start/End: Original strand, 33995377 - 33995470
Alignment:
| Q |
447 |
atttattataaataataaagggaagcttaccgagagtatcattgaggtaaaaaggaccattcttaatagcccaatcagagtaattatagccaaa |
540 |
Q |
| |
|
||||||| || ||| ||||| ||||||||| |||||||||||||| |||||||||||||||||| ||||||||||| || || ||||||||||| |
|
|
| T |
33995377 |
atttattttatatattaaagtgaagcttactgagagtatcattgacgtaaaaaggaccattcttgatagcccaatctgaatagttatagccaaa |
33995470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 419
Target Start/End: Original strand, 33995335 - 33995382
Alignment:
| Q |
371 |
tgtataaatattaaatttataaaataatatgtatgcctcaataatttat |
419 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||| |||||| |
|
|
| T |
33995335 |
tgtataaatattaa-tttataaaataatatatatgcctcaatgatttat |
33995382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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