View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13386_low_16 (Length: 539)
Name: NF13386_low_16
Description: NF13386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13386_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 18 - 531
Target Start/End: Complemental strand, 37558729 - 37558216
Alignment:
| Q |
18 |
tgtgagatgataattcgcaaatggttattggcaatagcattattcttattgggtccaattttaaaacttacatgttcttattattgctatagtaagatta |
117 |
Q |
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| T |
37558729 |
tgtgagatgataattcgcaaatggttattggcaatagcattattcttatcgggtccaattttaaaacttacatgttcttattattgctatagtaagatta |
37558630 |
T |
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| Q |
118 |
ttttacaggccttaaatttgacatggcttcggaaggtttgattatatattttttgcagcaaagtgatcaaacattgctgagttcgaaatcctagttcata |
217 |
Q |
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| T |
37558629 |
ttttacaggccttaaatttgacatggcttcggaaggtttgattatatattttttgcagcaaagtgatcaaacattgctgagtttgaaatcctagttcata |
37558530 |
T |
|
| Q |
218 |
acacaaaggaagtagatatctgaaggcatttcctttcccattttattattgatcaatcatttccttttcattcacgatttcagtttcggtttttcctaaa |
317 |
Q |
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| T |
37558529 |
acacaaaggaagtagatatctgaaggcatttcctttcccattttattattgatcaatcatttccttttcattcacgatttcagtttcggtttttcctaaa |
37558430 |
T |
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| Q |
318 |
cacactcaggattattgctagtaaatcaaagaaaaatccagtagcttcactaacactcatatccgttacttcagaccatggatacggcttcactggtttt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37558429 |
cacactcaggattattgctagtaaatcaaagaaaaatccagtagcttcactaacactcatatccgttacttcagaccatggatacggcttcactggtttt |
37558330 |
T |
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| Q |
418 |
gttgcttcaagaagaatctccaatggaatctttggttttgacctttccataggaaccgtgtaatgatagtatttctctgggtctggacaaagatcctgca |
517 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37558329 |
gttgcttcaagaagaacctccaatggaatctttggttttgacctttccataggaaccgtgtaatgatagtatttctctgggtctggacaaagatcctgca |
37558230 |
T |
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| Q |
518 |
gaatttcacctttg |
531 |
Q |
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| T |
37558229 |
gaatttcacctttg |
37558216 |
T |
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