View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13386_low_17 (Length: 514)
Name: NF13386_low_17
Description: NF13386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13386_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Complemental strand, 47344 - 46848
Alignment:
| Q |
1 |
acgaagaagatgatagagatgaaagatgggatcgtgattttgatatggatgttgataggtattctcttgtgtttctggagtcccatcatgatagtctgtc |
100 |
Q |
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| T |
47344 |
acgaagaagatgatagagatgaaagatgggatcgtgattttgatatggatgttgataggtattctcttgtgtttctggagtcccatcatgatagtctgtc |
47245 |
T |
|
| Q |
101 |
tttcagggctcttaatggttttctttttacagcaattctcttgcacgaagggtgaaaagtgaatatgctgaagctgagcataaagacgtggtatgtccta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47244 |
tttcagggctcttaatggttttctttttacagcaattctcttgcacgaagggtgaaaagtgaatatgctgaagctgagcataaagacgtggtatgtccta |
47145 |
T |
|
| Q |
201 |
acctgttttctttgctttgcattgcattgcaacaacaaaaattctttccaaacaattatctcaacattatgacctcagatctaatacccaggcattagaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47144 |
acctgttttctttgctttgcattgcattgcaacaacaaaaattctttccaaacaattatctcaacattatgacctcagatctaatacccaggcattagaa |
47045 |
T |
|
| Q |
301 |
taagtattgagtacaatatagtgtgagggatatttcattttaatacttttcctgatagctttgttgctgcagtttagaatttttagccatgaaggattag |
400 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47044 |
taagtaatgagtacaatatagtgtgagggatatttcattttaatacttttcctgatagctttgttgctgcagtttagaatttttagccatgaaggattag |
46945 |
T |
|
| Q |
401 |
tccaccctcgattggattcttaatcaaagattactttctataatgtactatcaaagtgagatatgcannnnnnncaaacaaattaaatgtgtatttt |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
46944 |
tccaccctcgattggattcttaatcaaagattactttctataatgtactatcaaagtgagatgtgcatttttttcaaacaaattaaatgtgtatttt |
46848 |
T |
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