View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13386_low_18 (Length: 503)
Name: NF13386_low_18
Description: NF13386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13386_low_18 |
 | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
| [»] scaffold0577 (1 HSPs) |
| | |
|
| [»] scaffold0607 (1 HSPs) |
| | |
|
| [»] scaffold0004 (1 HSPs) |
| | |
|
| [»] scaffold0011 (2 HSPs) |
| | |
|
| [»] scaffold0200 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 18 - 497
Target Start/End: Complemental strand, 32577261 - 32576783
Alignment:
| Q |
18 |
caagctcgccaaaggaaattcttaactttcgggggcaattttaatctccagatacagttccagttacccggtactcggtgttgaacaattgtcatatcat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
32577261 |
caagctcgccaaaggaaattcttaactttcgggggcaattttaatctccagatatagttccagttactcggtactcggtgttgaacaattgtcatatcat |
32577162 |
T |
|
| Q |
118 |
gattcagaatatctttataagcacttttaactgaataattaccatccctttcaaatgtctaaacaggcatatcatgagttaccgaaggaagcaacggagt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32577161 |
gattcagaatatctttataagcacttttaactgaataattaccatccctttcaaatttccaaacaggcatatcatgagttaccgaaggaagcaacggagt |
32577062 |
T |
|
| Q |
218 |
gttaaaaatatttctggcagtactagagtcaaagaaagtattaatgagctccacattccactgtttctggggtgtaatcaacaagtcagaaacagtgatg |
317 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32577061 |
gt-aaaaatatttctggcaatactagagtcaaagaaagtattaatgagctccacattccactgtttctcgggtgtaatcaacaagtcagaaacagtgatg |
32576963 |
T |
|
| Q |
318 |
gaaggccactccaattgatgatgagttgaaggtaaaattcgtgcaacattactgatccaaggatgatcccaaactggtatgtgttcgcctgtacctatac |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32576962 |
gaaggccactccaattgatgatgagttgaaggtaaaattcgtgcaacattactgatccaaggatgatcccaaactggtatgtgttcgcctgtacctatac |
32576863 |
T |
|
| Q |
418 |
tccactgaaaaccacgccgaatcacatctttagcactccaaataatacgccaaacataactgggattatggcctatgcta |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||| |
|
|
| T |
32576862 |
tccactgaaaaccacgccgaatcacatctttagcactccaaatactacgccaaacataactaggattatggccaatgcta |
32576783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 33 - 497
Target Start/End: Original strand, 32283695 - 32284159
Alignment:
| Q |
33 |
aaattcttaactttcgggggcaattttaatctccagatacagttccagttacccggtactcggtgttgaacaattgtcatatcatgattcagaatatctt |
132 |
Q |
| |
|
|||||||| || || |||||||||||||| ||||| ||||| ||| |||||||||| || ||||||| |||| || || ||||| |||||||||||| | |
|
|
| T |
32283695 |
aaattcttgacctttgggggcaattttaaactccaaatacaattctagttacccggcacatggtgttgtacaactgccacatcattattcagaatatcct |
32283794 |
T |
|
| Q |
133 |
tataagcacttttaactgaataattaccatccctttcaaatgtctaaacaggcatatcatgagttaccgaaggaagcaacggagtgttaaaaatatttct |
232 |
Q |
| |
|
| |||||||||||||||||||| ||||||||| ||||| || ||||||||| |||||||||||||||||| | | ||||| |||||||||||||| |
|
|
| T |
32283795 |
tgtaagcacttttaactgaataggcaccatccctctcaaaattccaaacaggcacatcatgagttaccgaagggaatagtggagtattaaaaatatttct |
32283894 |
T |
|
| Q |
233 |
ggcagtactagagtcaaagaaagtattaatgagctccacattccactgtttctggggtgtaatcaacaagtcagaaacagtgatggaaggccactccaat |
332 |
Q |
| |
|
|||||| | |||||| ||| |||||| | ||||| |||||| | ||| ||| |||||| |||||| ||||||||||| || || || |||||||| |
|
|
| T |
32283895 |
agcagtagcattgtcaaaaaaaacattaattatctccatattccattatttttggtgtgtaaccaacaaatcagaaacagtaatagatggacactccaaa |
32283994 |
T |
|
| Q |
333 |
tgatgatgagttgaaggtaaaattcgtgcaacattactgatccaaggatgatcccaaactggtatgtgttcgcctgtacctatactccactgaaaaccac |
432 |
Q |
| |
|
||||||||||| | ||||||||||||| ||||||||| ||| || |||||||||||||| |||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
32283995 |
tgatgatgagtatacggtaaaattcgtgttgcattactgagccatgggtgatcccaaactggaatgtgttctcctgtgcctatactccactgaaaaccac |
32284094 |
T |
|
| Q |
433 |
gccgaatcacatctttagcactccaaataatacgccaaacataactgggattatggcctatgcta |
497 |
Q |
| |
|
| |||||||| ||||| ||| |||| || |||||||||||||||| |||||||||||||||||| |
|
|
| T |
32284095 |
gtcgaatcacgtctttggcagtccatatgctacgccaaacataactaggattatggcctatgcta |
32284159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 18 - 497
Target Start/End: Original strand, 26430107 - 26430587
Alignment:
| Q |
18 |
caagctcgccaaaggaaattcttaactttcgggggcaattttaatctccagatacagttccagttacccggtactcggtgttgaacaattgtcatatcat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
26430107 |
caagctcgccaaaggaaattcttaactttcgggggcaattttaagctccagatacaattccagttacccggtacacggtgttgaacaattgccatatcat |
26430206 |
T |
|
| Q |
118 |
gattcagaatatctttataagcacttttaactgaataattaccatccctttcaaatgtct-aaacaggcatatcatgagttaccgaaggaagcaacggag |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26430207 |
gattcagaatatctttataagcacttttaactgaataattaccatccctttcaaaattttcaaacaggcatatcatgagttactgaaggaagcaacggag |
26430306 |
T |
|
| Q |
217 |
tgttaaaaatatttctggcagtactagagtcaaagaaagtattaatgagctccacattccactgtttctggggtgtaatcaacaagtcagaaacagtgat |
316 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26430307 |
tgttaaaaatgtttctggcagtactagaatcaaagaaagtattaatgagctccatattccactgtttctggggtgtaatcaacaagtcagaaacagtgat |
26430406 |
T |
|
| Q |
317 |
ggaaggccactccaattgatgatgagttgaaggtaaaattcgtgcaacattactgatccaaggatgatcccaaactggtatgtgttcgcctgtacctata |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26430407 |
ggaaggccactccaattgatgatgagttgaaggtaaaattcgtgcaacattactgatccaaggatgatcccaaactggtatgtgttcgcctgtacctata |
26430506 |
T |
|
| Q |
417 |
ctccactgaaaaccacgccgaatcacatctttagcactccaaataatacgccaaacataactgggattatggcctatgcta |
497 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||| |
|
|
| T |
26430507 |
ctccactgaaaaccactccgaatcacatctttagcactccaaatactacgccaaacataactaggattatggccaatgcta |
26430587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 17 - 497
Target Start/End: Original strand, 26006976 - 26007464
Alignment:
| Q |
17 |
acaagctcgccaaaggaaattcttaactttcgggggcaattttaatctccagatacagttccagttacccggtactcggtgttgaacaattgtcatatca |
116 |
Q |
| |
|
|||||||| ||| | ||||||||| | ||| ||| |||||||| ||||| ||||| || |||||| |||| || | |||||| |||| || || |||| |
|
|
| T |
26006976 |
acaagctctccatatgaaattcttgatcgtcgagggaaattttaaactccaaatacaatttcagttagccggcacacagtgttgtacaactgccacatca |
26007075 |
T |
|
| Q |
117 |
tgattcagaatatctttataagcacttttaactgaataattaccatccctttcaaatgtctaaacaggcatatcatgagttaccgaaggaagcaacggag |
216 |
Q |
| |
|
||||||||| |||| || ||| |||||||||||||||| ||||||| | || ||| || ||||||||| |||||||||||||||||||| ||||| | |
|
|
| T |
26007076 |
tgattcagagtatccttgtaaacacttttaactgaataggcaccatccttctcgaatttccaaacaggcacatcatgagttaccgaaggaaataacgggg |
26007175 |
T |
|
| Q |
217 |
tgttaaaaatatttctggcagtactagagtcaaagaaa--------gtattaatgagctccacattccactgtttctggggtgtaatcaacaagtcagaa |
308 |
Q |
| |
|
| ||| |||||||||| |||||| || || ||| ||| | |||||| ||||||| |||||| ||||| |||||||||| |||||||| |||| |
|
|
| T |
26007176 |
tattataaatatttctagcagtagtattgtaaaaaaaaaaaaaaaagcattaattagctccatattccattgtttttggggtgtaaccaacaagttagaa |
26007275 |
T |
|
| Q |
309 |
acagtgatggaaggccactccaattgatgatgagttgaaggtaaaattcgtgcaacattactgatccaaggatgatcccaaactggtatgtgttcgcctg |
408 |
Q |
| |
|
||| |||| || ||||||||||| ||||||||||| || |||||||||| |||| ||||||| | ||| || |||||||||||||| |||||||| |||| |
|
|
| T |
26007276 |
acaatgatagatggccactccaaatgatgatgagtagacggtaaaattcatgcagcattactaagccatgggtgatcccaaactggaatgtgttctcctg |
26007375 |
T |
|
| Q |
409 |
tacctatactccactgaaaaccacgccgaatcacatctttagcactccaaataatacgccaaacataactgggattatggcctatgcta |
497 |
Q |
| |
|
| |||||||||| ||||||| ||| |||||||| ||||| |||||||| || |||||||||||||||| |||||||||||||||||| |
|
|
| T |
26007376 |
tgtctatactccaatgaaaactacggcgaatcacgtctttggcactccatatgctacgccaaacataactaggattatggcctatgcta |
26007464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 17 - 497
Target Start/End: Complemental strand, 54551832 - 54551353
Alignment:
| Q |
17 |
acaagctcgccaaaggaaattcttaactttcgggggcaattttaatctccagatacagttccagttacccggtactcggtgttgaacaattgtcatatca |
116 |
Q |
| |
|
|||||||| ||| |||||| |||| ||||||| ||| |||||||| ||||| ||||| |||||||| |||| || ||||| || |||| || || ||| |
|
|
| T |
54551832 |
acaagctctccataggaaaatcttgactttcgagggaaattttaaactccaaatacatgtccagttatccggcacacggtgatgtacaactgccacgtca |
54551733 |
T |
|
| Q |
117 |
tgattcagaatatctttataagcacttttaactgaataattaccatccctttcaaatgtctaaacaggcatatcatgagttaccgaaggaagcaacggag |
216 |
Q |
| |
|
||||| ||||||| | ||||||||||||||||||||| ||||||||| || || | ||||||||| ||||||| |||||||| | | || ||| |
|
|
| T |
54551732 |
tgatttagaatattcgtgtaagcacttttaactgaataagcaccatccctctcgaactttcaaacaggcacatcatga-ttaccgaaaggaataatggaa |
54551634 |
T |
|
| Q |
217 |
tgttaaaaatatttctggcagtactagagtcaaagaaagtattaatgagctccacattccactgtttctggggtgtaatcaacaagtcagaaacagtgat |
316 |
Q |
| |
|
| ||||||||||||||| ||||| | |||||| |||| |||||| || |||| |||||| || || |||| ||||| || |||||||||||||||||| |
|
|
| T |
54551633 |
tattaaaaatatttctgacagtagcattgtcaaaaaaagcattaattagatccatattccattgcttatgggatgtaaccagcaagtcagaaacagtgat |
54551534 |
T |
|
| Q |
317 |
ggaaggccactccaattgatgatgagttgaaggtaaaattcgtgcaacattactgatccaaggatgatcccaaactggtatgtgttcgcctgtacctata |
416 |
Q |
| |
|
|| ||||||| ||| || |||||||| | ||||||||||||||| ||||| ||| ||| || ||||| |||||||| |||| | ||||| |||||| |
|
|
| T |
54551533 |
agatggccacttcaaatgttgatgagtgaacggtaaaattcgtgcagcattattgagccatgggtgatctcaaactggaatgttctatcctgtgcctata |
54551434 |
T |
|
| Q |
417 |
ctccactgaaaaccacgccgaatcacatctttagcactccaaataatacgccaaacataactgggattatggcctatgcta |
497 |
Q |
| |
|
||||||||||||||||| |||| ||| ||||| |||||||| || |||||||||||||||| |||||||| ||||||||| |
|
|
| T |
54551433 |
ctccactgaaaaccacgacgaagcacgtctttggcactccatatgctacgccaaacataactaggattatgacctatgcta |
54551353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 17 - 497
Target Start/End: Complemental strand, 48445883 - 48445412
Alignment:
| Q |
17 |
acaagctcgccaaaggaaattcttaactttcgggggcaattttaatctccagatacagttccagttacccggtactcggtgttgaacaattgtcatatca |
116 |
Q |
| |
|
|||||||| ||| | ||||||||| || || |||||||||||||| |||| ||||| |||||||||| ||| || |||||||| |||| || || |||| |
|
|
| T |
48445883 |
acaagctctccatacgaaattcttgacctttgggggcaattttaaaatccaaatacaattccagttactcggcacacggtgttgtacaactgccacatca |
48445784 |
T |
|
| Q |
117 |
tgattcagaatatctttataagcacttttaactgaataattaccatccctttcaaatgtctaaacaggcatatcatgagttaccgaaggaagcaacggag |
216 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||| | ||||||| || || || ||||| ||| |||||||||||||||| | | ||||||| |
|
|
| T |
48445783 |
tgattcagaatatccttgtaagcacttttaactgaataagcatcatccctctcgaacttccaaacatgcacatcatgagttaccgaatggaataacggag |
48445684 |
T |
|
| Q |
217 |
tgttaaaaatatttctggcagtactagagt--caaagaaagtattaatgagctccacattccactgtttctggggtgtaatcaacaagtcagaaacagtg |
314 |
Q |
| |
|
| |||||||||||||| || || || || ||| ||| |||||| ||||||| ||||| ||||| |||||||||| ||||||||||||||| ||| |
|
|
| T |
48445683 |
tattaaaaatatttctagctatagtattgtaaaaaaaaaaacattaattagctccatattcccttgtttttggggtgtaaccaacaagtcagaaaccgtg |
48445584 |
T |
|
| Q |
315 |
atggaaggccactccaattgatgatgagttgaaggtaaaattcgtgcaacattactgatccaaggatgatcccaaactggtatgtgttcgcctgtaccta |
414 |
Q |
| |
|
|| || || || | ||| |||||||||| || ||||||||||||||| | ||||||| ||| | ||||||||||| ||| | ||||| ||||| |||| |
|
|
| T |
48445583 |
atagatggtcatttcaaatgatgatgagaagacggtaaaattcgtgcagc-ttactgagccatgaatgatcccaaattggaaattgttctcctgtgccta |
48445485 |
T |
|
| Q |
415 |
tactccactgaaaaccacgccgaatcacatctttagcactccaaataatacgccaaacataactgggattatggcctatgcta |
497 |
Q |
| |
|
| ||||||||||||||||| ||||| |||||||| || |||||||||||||||| |||||||| ||||||||| |
|
|
| T |
48445484 |
tgctccactgaaaaccacg----------tctttggcactccatatgctacgccaaacataactaggattatgacctatgcta |
48445412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 17 - 341
Target Start/End: Original strand, 22360144 - 22360467
Alignment:
| Q |
17 |
acaagctcgccaaaggaaattcttaactttcgggggcaattttaatctccagatacagttccagttacccggtactcggtgttgaacaattgtcatatca |
116 |
Q |
| |
|
|||||||| ||| | ||||||||| || ||||||||||||||||| ||||| ||| | ||||||||||||| || || ||||| |||| | || ||| |
|
|
| T |
22360144 |
acaagctctccataagaaattcttgaccttcgggggcaattttaaactccaaatataattccagttacccgacacacg-tgttgtacaacttccacctca |
22360242 |
T |
|
| Q |
117 |
tgattcagaatatctttataagcacttttaactgaataattaccatccctttcaaatgtctaaacaggcatatcatgagttaccgaaggaagcaacggag |
216 |
Q |
| |
|
||||| |||||||| || |||||| |||||||||||||| ||||||||| || || || ||||||||| ||| ||||||| ||||| | ||| || |
|
|
| T |
22360243 |
tgatttagaatatccttgtaagcatttttaactgaataagcaccatccctctcgaacttccaaacaggcacatcttgagttatcgaagagaataacaaag |
22360342 |
T |
|
| Q |
217 |
tgttaaaaatatttctggcagtactagagtcaaagaaagtattaatgagctccacattccactgtttctggggtgtaatcaacaagtcagaaacagtgat |
316 |
Q |
| |
|
| |||||||||||||| |||||| || ||| || |||| |||||| ||||| ||||| ||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
22360343 |
tattaaaaatatttctagcagtagtattgtccaaaaaagcattaatttactccatattccgttgtttttggggtgtaaccaacaagtcagaaacagtgat |
22360442 |
T |
|
| Q |
317 |
ggaaggccactccaattgatgatga |
341 |
Q |
| |
|
|| | ||||||||| ||||||||| |
|
|
| T |
22360443 |
agatgaccactccaaatgatgatga |
22360467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 18 - 496
Target Start/End: Original strand, 9610417 - 9610895
Alignment:
| Q |
18 |
caagctcgccaaaggaaattcttaactttcgggggcaattttaatctccagatacagttccagttacccggtactcggtgttgaacaattgtcatatcat |
117 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||| |||||| ||||||||||| ||||| ||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
9610417 |
caagctcaccaaagaaaattcttaactttcgggggcagttttaagctccagatacaattccaattacccggtacacggtgttgaacaattgccatatcat |
9610516 |
T |
|
| Q |
118 |
gattcagaatatctttataagcacttttaactgaataattaccatccctttcaaatgtctaaacaggcatatcatgagttaccgaaggaagcaacggagt |
217 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
9610517 |
gattcagcatatctttataagcacttttaactgaataattaccatccctttcaaatttccaaacaggcatatcatgagttactgaaggaagtaacggagt |
9610616 |
T |
|
| Q |
218 |
gttaaaaatatttctggcagtactagagtcaaagaaagtattaatgagctccacattccactgtttctggggtgtaatcaacaagtcagaaacagtgatg |
317 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9610617 |
gttaaaaatgtttctggcagtactagagtcaaagaaagtattaatgagctccatattccactgtttctggggtgtaatcaacaagtcagaaacagtgatg |
9610716 |
T |
|
| Q |
318 |
gaaggccactccaattgatgatgagttgaaggtaaaattcgtgcaacattactgatccaaggatgatcccaaactggtatgtgttcgcctgtacctatac |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9610717 |
gaaggccactccaattgatgatgagttgaaggtaaaattcgtgcaacattactgatccaaggatgatcccaaactggtatgtgttcgcctgtacctatac |
9610816 |
T |
|
| Q |
418 |
tccactgaaaaccacgccgaatcacatctttagcactccaaataatacgccaaacataactgggattatggcctatgct |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||| |
|
|
| T |
9610817 |
tccactgaaaaccacgccgaatcacatctttagcactccaaatactacgccaaacataactaggattatggccaatgct |
9610895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 18 - 393
Target Start/End: Original strand, 30797713 - 30798088
Alignment:
| Q |
18 |
caagctcgccaaaggaaattcttaactttcgggggcaattttaatctccagatacagttccagttacccggtactcggtgttgaacaattgtcatatcat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||| ||| |||||||| |
|
|
| T |
30797713 |
caagctcgccaaaggaaattcttaactttcgggggcaattttaagctccagatacaattccagttacccggtacacggtgttgaacacttgccatatcat |
30797812 |
T |
|
| Q |
118 |
gattcagaatatctttataagcacttttaactgaataattaccatccctttcaaatgtctaaacaggcatatcatgagttaccgaaggaagcaacggagt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30797813 |
gattcagaatatctttataagcacttttaactgaataattaccatccctttcaaatttccaaacaggcatatcatgagttaccgaaggaagcaacggagt |
30797912 |
T |
|
| Q |
218 |
gttaaaaatatttctggcagtactagagtcaaagaaagtattaatgagctccacattccactgtttctggggtgtaatcaacaagtcagaaacagtgatg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30797913 |
gttaaaaatatttctggcagtactagagtcaaagaaagtattaatgagctccatattccactgtttctggggtgtaatcaacaagtcagaaacagtgatg |
30798012 |
T |
|
| Q |
318 |
gaaggccactccaattgatgatgagttgaaggtaaaattcgtgcaacattactgatccaaggatgatcccaaactg |
393 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
30798013 |
gaaggccactccgattgatgatgagttgaaggtaaaattcgttcaattttactgatccaaggatgatcccaaactg |
30798088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 18 - 344
Target Start/End: Original strand, 29243022 - 29243348
Alignment:
| Q |
18 |
caagctcgccaaaggaaattcttaactttcgggggcaattttaatctccagatacagttccagttacccggtactcggtgttgaacaattgtcatatcat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||| || ||||| |
|
|
| T |
29243022 |
caagctcgccaaaggaaattcttaactttcgggggcatttttaagctccagatacagttccagttacccggtacacggtgttgaacaattgccacatcat |
29243121 |
T |
|
| Q |
118 |
gattcagaatatctttataagcacttttaactgaataattaccatccctttcaaatgtctaaacaggcatatcatgagttaccgaaggaagcaacggagt |
217 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
29243122 |
gattcagaatatctttataggcacttttaactgaataattaccatccctttcaaatttccaaacaggcacatcatgagttaccgaaggaagcaacagagt |
29243221 |
T |
|
| Q |
218 |
gttaaaaatatttctggcagtactagagtcaaagaaagtattaatgagctccacattccactgtttctggggtgtaatcaacaagtcagaaacagtgatg |
317 |
Q |
| |
|
||||||||||||||| |||||| | ||||||| ||||||||||| ||||||| |||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
29243222 |
gttaaaaatatttctagcagtaacaaagtcaaaaaaagtattaataagctccatattccactgtttttggggtgtaatcaacaagttagaaacagtgatg |
29243321 |
T |
|
| Q |
318 |
gaaggccactccaattgatgatgagtt |
344 |
Q |
| |
|
|| ||||| |||||||||||||||||| |
|
|
| T |
29243322 |
gatggccattccaattgatgatgagtt |
29243348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 17 - 486
Target Start/End: Original strand, 27453389 - 27453864
Alignment:
| Q |
17 |
acaagctcgccaaaggaaattcttaactttcgggggcaattttaatctccagatacagttccagttacccggtactcggtgttgaacaattgtcatatca |
116 |
Q |
| |
|
|||||||| ||| | ||||||||| || || |||||||||||||| ||||| ||||| || |||||||||| || | ||||| |||| || || |||| |
|
|
| T |
27453389 |
acaagctctccataagaaattcttgacctttgggggcaattttaaactccaaatacaattttagttacccggcacacagtgttctacaactgccacatca |
27453488 |
T |
|
| Q |
117 |
tgattcagaatatctttataagcacttttaactgaataattaccatccctttcaaatgtctaaacaggcatatcatgagttaccgaaggaagcaacggag |
216 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||| ||||||||| || || || ||||| | | |||||||||||||||||| | ||| ||| |
|
|
| T |
27453489 |
tgattcagaatattcttgtaagcacttttaactgaatatgcaccatccctctcgaacttccaaacaagaacatcatgagttaccgaagggaataacagag |
27453588 |
T |
|
| Q |
217 |
tgttaaaaatatttctggcagtactagagtcaaagaaa------gtattaatgagctccacattccactgtttctggggtgtaatcaacaagtcagaaac |
310 |
Q |
| |
|
| |||||||||||||| ||| || || || ||| ||| | |||||| ||||||| |||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
27453589 |
tattaaaaatatttctagcaatagtattgtaaaaaaaaaaagaagcattaattagctccatattccattgtttctggggtgtaaacaacaagtcagaaac |
27453688 |
T |
|
| Q |
311 |
agtgatggaaggccactccaattgatgatgagttgaaggtaaaattcgtgcaacattactgatccaaggatgatcccaaactggtatgtgttcgcctgta |
410 |
Q |
| |
|
| |||| | |||||| |||| |||||||| || || ||||||||||||||||||||||||| ||| || |||||||||||||| |||||||| ||| |
|
|
| T |
27453689 |
aatgatatatggccacaccaaatgatgatgggtagacggtaaaattcgtgcaacattactgagccatgggtgatcccaaactggaatgtgttcttttgtg |
27453788 |
T |
|
| Q |
411 |
cctatactccactgaaaaccacgccgaatcacatctttagcactccaaataatacgccaaacataactgggattat |
486 |
Q |
| |
|
|||||||||||||||||| |||| |||||||| ||||| |||||||| || |||||||||||||||| ||||||| |
|
|
| T |
27453789 |
cctatactccactgaaaagcacgacgaatcacgtctttggcactccatatgctacgccaaacataactaggattat |
27453864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 400; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 497
Target Start/End: Complemental strand, 32956662 - 32956183
Alignment:
| Q |
18 |
caagctcgccaaaggaaattcttaactttcgggggcaattttaatctccagatacagttccagttacccggtactcggtgttgaacaattgtcatatcat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||| ||||||||||| ||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
32956662 |
caagctcgccaaaggaaattcttaactttcaggggaaattttaagctccagatacaattccagttacccggtacacggtgttgaacaattgccatatcat |
32956563 |
T |
|
| Q |
118 |
gattcagaatatctttataagcacttttaactgaataattaccatccctttcaaatgtctaaacaggcatatcatgagttaccgaaggaagcaacggagt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
32956562 |
gattcagaatatctttataagcacttttaactgaataattcccatccctttcaaatttccaaacaggtatatcatgagttaccgaaggaagcaacggagt |
32956463 |
T |
|
| Q |
218 |
gttaaaaatatttctggcagtactagagtcaaagaaagtattaatgagctccacattccactgtttctggggtgtaatcaacaagtcagaaacagtgatg |
317 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32956462 |
gttaaaaatatttctggcagtaccagagtcaaaaaaagtattaatgagctccatattccactgtttctggggtgtaatcaacaagtcagaaacaatgatg |
32956363 |
T |
|
| Q |
318 |
gaaggccactccaattgatgatgagttgaaggtaaaattcgtgcaacattactgatccaaggatgatcccaaactggtatgtgttcgcctgtacctatac |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32956362 |
gaaggccactccaattgatgatgagttgaaggtaaaattcgtgcaacattactgatccaagggtgatcccaaactggtatatgttcgcctgtacctatac |
32956263 |
T |
|
| Q |
418 |
tccactgaaaaccacgccgaatcacatctttagcactccaaataatacgccaaacataactgggattatggcctatgcta |
497 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||| |
|
|
| T |
32956262 |
tccactgaaaaccacgtcgaatcacatctttagcactccaaatactacgccaaacataactaggattatggccaatgcta |
32956183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 259 - 497
Target Start/End: Original strand, 7437443 - 7437681
Alignment:
| Q |
259 |
taatgagctccacattccactgtttctggggtgtaatcaacaagtcagaaacagtgatggaaggccactccaattgatgatgagttgaaggtaaaattcg |
358 |
Q |
| |
|
|||| ||||||| |||||| ||||| ||| |||||| |||||| ||||||||| | || || ||||||||||| ||||||||||| || || |||||||| |
|
|
| T |
7437443 |
taattagctccatattccattgtttttggtgtgtaaccaacaaatcagaaacaataatagatggccactccaaatgatgatgagtagacggcaaaattcg |
7437542 |
T |
|
| Q |
359 |
tgcaacattactgatccaaggatgatcccaaactggtatgtgttcgcctgtacctatactccactgaaaaccacgccgaatcacatctttagcactccaa |
458 |
Q |
| |
|
|| |||||| || ||| || |||||||||||||| |||||||| ||||| ||||||||||||| ||||||||| |||||||| ||||| |||||||| |
|
|
| T |
7437543 |
tgttgcattaccgagccatgggtgatcccaaactggaatgtgttctcctgtgcctatactccactcaaaaccacggcgaatcacgtctttggcactccat |
7437642 |
T |
|
| Q |
459 |
ataatacgccaaacataactgggattatggcctatgcta |
497 |
Q |
| |
|
|| |||||||||||||||| |||||| ||||||||||| |
|
|
| T |
7437643 |
atgctacgccaaacataactaggattaaggcctatgcta |
7437681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 7436448 - 7436668
Alignment:
| Q |
17 |
acaagctcgccaaaggaaattcttaactttcgggggcaattttaatctccagatacagttccagttacccggtactcggtgttgaacaattgtcatatca |
116 |
Q |
| |
|
|||||||| ||| || |||||||| || || |||||||||||||| ||| | ||||| |||||||||||||| || |||||||| |||| || || |||| |
|
|
| T |
7436448 |
acaagctctccatagaaaattcttgacctttgggggcaattttaaactctaaatacaattccagttacccggcacacggtgttgtacaactgccacatca |
7436547 |
T |
|
| Q |
117 |
tgattcagaatatctttataagcacttttaactgaataattaccatccctttcaaatgtctaaacaggcatatcatgagttaccgaaggaagcaacggag |
216 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||| ||| ||||| || ||| || ||||| ||| |||||||||||||||||| | || || | |
|
|
| T |
7436548 |
tgattcagaatatccttgtaagcacttttaactgaataggcaccttccctctcgaatttccaaacatgcacatcatgagttaccgaagggaataatgggg |
7436647 |
T |
|
| Q |
217 |
tgttaaaaatatttctggcag |
237 |
Q |
| |
|
| |||||||||||||| |||| |
|
|
| T |
7436648 |
tattaaaaatatttctagcag |
7436668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 321 - 497
Target Start/End: Complemental strand, 7607114 - 7606938
Alignment:
| Q |
321 |
ggccactccaattgatgatgagttgaaggtaaaattcgtgcaacattactgatccaaggatgatcccaaactggtatgtgttcgcctgtacctatactcc |
420 |
Q |
| |
|
||||||||||| |||| | |||| || ||||||||||||| ||||||| ||| || ||||| |||||||| |||||||| ||| | |||||||||| |
|
|
| T |
7607114 |
ggccactccaaatgataacgagtagacggtaaaattcgtgttgcattactaggccatgggtgatctcaaactggaatgtgttctcctatgcctatactcc |
7607015 |
T |
|
| Q |
421 |
actgaaaaccacgccgaatcacatctttagcactccaaataatacgccaaacataactgggattatggcctatgcta |
497 |
Q |
| |
|
||||||||| || |||||||| ||||| |||||| | || |||||||||||||||| |||||||||||||||||| |
|
|
| T |
7607014 |
actgaaaactacatcgaatcacgtctttggcactcaatatgctacgccaaacataactaggattatggcctatgcta |
7606938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 395; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 496
Target Start/End: Original strand, 3963209 - 3963687
Alignment:
| Q |
18 |
caagctcgccaaaggaaattcttaactttcgggggcaattttaatctccagatacagttccagttacccggtactcggtgttgaacaattgtcatatcat |
117 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||||| ||||||||||| ||||| |||||| |||| |||||||||||||||| |||||||| |
|
|
| T |
3963209 |
caagctcgccaaagaaaattcttaactttcgggggcagttttaaactccagatacaattccaattacccagtacacggtgttgaacaattgccatatcat |
3963308 |
T |
|
| Q |
118 |
gattcagaatatctttataagcacttttaactgaataattaccatccctttcaaatgtctaaacaggcatatcatgagttaccgaaggaagcaacggagt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3963309 |
gattcagaatatctttataagcacttttaactgaataattaccatccctttcaaaattccaaacaggcatatcatgagttactgaaggaagcaacggagt |
3963408 |
T |
|
| Q |
218 |
gttaaaaatatttctggcagtactagagtcaaagaaagtattaatgagctccacattccactgtttctggggtgtaatcaacaagtcagaaacagtgatg |
317 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3963409 |
gttaaaaatgtttatggcagtactagagtcaaagaaagtattaatgagctccatattccactgtttctggggtgtaatcaacaagtcagaaacagtgatg |
3963508 |
T |
|
| Q |
318 |
gaaggccactccaattgatgatgagttgaaggtaaaattcgtgcaacattactgatccaaggatgatcccaaactggtatgtgttcgcctgtacctatac |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
3963509 |
gaaggccactccaattgatgatgagttgaaggtaaaattcgtgcaacattactgatccagggatgatctcaaactggtatgtgttcacctgtacctatac |
3963608 |
T |
|
| Q |
418 |
tccactgaaaaccacgccgaatcacatctttagcactccaaataatacgccaaacataactgggattatggcctatgct |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||| |
|
|
| T |
3963609 |
tccactgaaaaccacgccgaatcacatctttagcactccaaatactacgccaaacataactaggattatggccaatgct |
3963687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 372
Target Start/End: Complemental strand, 30465892 - 30465535
Alignment:
| Q |
18 |
caagctcgccaaaggaaattcttaactttcgggggcaattttaatctccagatacagttccagttacccggtactcggtgttgaacaattgtcatatcat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || || ||||||||||||| | || ||||| |
|
|
| T |
30465892 |
caagctcgccaaaggaaattcttaactttcgggggcaattttaaactccagatacaattccagttacctggcacacggtgttgaacaactaccaaatcat |
30465793 |
T |
|
| Q |
118 |
gattcagaatatctttataagcacttttaactgaataattaccatccctttcaaatgtctaaacaggcatatcatgagttaccgaaggaagcaacggagt |
217 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||| ||||||||||||||| || ||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
30465792 |
gattcagaatatccttataagcacttttaactaaataagcaccatccctttcaaacttccaaacaggcacatcaagagttaccgaaggaagcaacggagt |
30465693 |
T |
|
| Q |
218 |
gttaaaaatatttctggcagtactagagtcaaagaaagtattaatgagctccacattccac---tgtttctggggtgtaatcaacaagtcagaaacagtg |
314 |
Q |
| |
|
||||||||| ||||| |||||| || |||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
30465692 |
gttaaaaatgtttctagcagtaacagtgtcaaaaaaagtattaatgagctccatattccactgttgtttctggggtgtaatcaacaagtcagaaacggtg |
30465593 |
T |
|
| Q |
315 |
atggaaggccactccaattgatgatgagttgaaggtaaaattcgtgcaacattactga |
372 |
Q |
| |
|
||| | ||||||||||| ||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
30465592 |
atgaatggccactccaagtgatgataagttgaaggtaaaattcgtgcaatattactga |
30465535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 17 - 497
Target Start/End: Complemental strand, 9359968 - 9359485
Alignment:
| Q |
17 |
acaagctcgccaaaggaaattcttaactttcgggggcaattttaatctccagatacagttccagttacccggtactcggtgttgaacaattgtcatatca |
116 |
Q |
| |
|
|||||||| ||| ||||||||||| || ||||||||||||||||| ||||| ||||| ||||||||||| || ||||| || |||| ||||| |||| |
|
|
| T |
9359968 |
acaagctctccataggaaattcttgaccttcgggggcaattttaaactccaaatacaattccagttaccttccacacggtgatgtacaactgtcacatca |
9359869 |
T |
|
| Q |
117 |
tgattcagaatatctttataagcacttttaactgaataattaccatccctttcaaatgtctaaacaggcatatcatgagttaccgaaggaagcaacggag |
216 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||| ||||||||| || || || ||||||||| |||||||| ||||||||| | ||||| | |
|
|
| T |
9359868 |
tgattcagaatatccttgtaagcacttttaactgaataggcaccatccctctcgaacatccaaacaggcacatcatgagctaccgaagggaataacgggg |
9359769 |
T |
|
| Q |
217 |
tgttaaaaatatttctggcagtactagagtcaaagaaag-ta--ttaatgagctccacattccactgtttctggggtgtaatcaacaagtcagaaacagt |
313 |
Q |
| |
|
| |||||||||||||| ||||| | |||||| ||| || ||||| ||||||| |||||| ||||| |||||||||| |||||||||||||||||| |
|
|
| T |
9359768 |
tattaaaaatatttctagcagttgcattgtcaaaaaaaaataatttaattagctccatattccattgtttttggggtgtaaccaacaagtcagaaacagt |
9359669 |
T |
|
| Q |
314 |
gatggaaggccactccaattgatgatgagttgaaggtaaaattcgtgcaacattactgatccaaggatgatcccaaactggtatgtgttcgcctgtacct |
413 |
Q |
| |
|
||| || ||||||||||| |||||||| || || ||||||||||||||| ||||||||| || || |||||||||||||| ||||| || ||| ||| |
|
|
| T |
9359668 |
gatagatggccactccaaatgatgatgggtagacggtaaaattcgtgcagcattactgagtcatgggtgatcccaaactggaatgtgatcttttgtgcct |
9359569 |
T |
|
| Q |
414 |
atactccactgaaaaccacgccgaatcacatctttagcactccaaataatacgccaaacataactgggattatggcctatgcta |
497 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| |||||||| || ||||||||||||||| |||||||||||||||||| |
|
|
| T |
9359568 |
atactccactgaaaaccacggcgaatcacgtctttggcactccatatgctacgccaaacataacaaggattatggcctatgcta |
9359485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 113 - 493
Target Start/End: Original strand, 24268731 - 24269108
Alignment:
| Q |
113 |
atcatgattcagaatatctttataagcacttttaactgaataattaccatccctttcaaatgtctaaacaggcatatcatgagttaccgaaggaagcaac |
212 |
Q |
| |
|
||||||||| |||||||| |||||| ||||||||| ||||||| ||||||| | || || | || |||||| ||||||||| |||||||| |||||| |
|
|
| T |
24268731 |
atcatgatttagaatatccttataaacacttttaaatgaataagcaccatccttctcgaactttcaagcaggcacatcatgagtcaccgaagggagcaac |
24268830 |
T |
|
| Q |
213 |
ggagtgttaaaaatatttctggcagtactagagtcaaagaaagtattaatgagctccacattccactgtttctggggtgtaatcaacaagtcagaaacag |
312 |
Q |
| |
|
|| ||||| ||||||||||| |||||| | |||||| ||| ||||| |||||| |||||| ||||| || | ||||| |||||||||||||| || |
|
|
| T |
24268831 |
ggggtgttgaaaatatttctagcagtagcattgtcaaaaaaaacattaactggctccatattccattgtttttgagatgtaaccaacaagtcagaaatag |
24268930 |
T |
|
| Q |
313 |
tgatggaaggccactccaattgatgatgagttgaaggtaaaattcgtgcaacattactgatccaaggatgatcccaaactggtatgtgttcgcctgtacc |
412 |
Q |
| |
|
|||| |||||||| || ||||||| | || |||| |||| ||||||||||||||| ||| ||||||| ||||| |||||| ||||| | ||| || |
|
|
| T |
24268931 |
tgatatgtggccactctaa---atgatgactagacggtacaatttgtgcaacattactgagccatggatgattccaaattggtatatgttcacatgttcc |
24269027 |
T |
|
| Q |
413 |
tatactccactgaaaaccacgccgaatcacatctttagcactccaaataatacgccaaacataactgggattatggcctat |
493 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
24269028 |
tatactccactgaaaattgcgacgaatcacatcttttgcactccaaatactacgccaaacataactaggattatggcctat |
24269108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 25612278 - 25612322
Alignment:
| Q |
18 |
caagctcgccaaaggaaattcttaactttcgggggcaattttaat |
62 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25612278 |
caagctctccaaaggaaattcttaactttcgggggcaattttaat |
25612322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 408 - 475
Target Start/End: Original strand, 33337247 - 33337314
Alignment:
| Q |
408 |
gtacctatactccactgaaaaccacgccgaatcacatctttagcactccaaataatacgccaaacata |
475 |
Q |
| |
|
|||||||||||||| ||||||||| | ||||||||||||| ||||||||||| |||||||| |||| |
|
|
| T |
33337247 |
gtacctatactccattgaaaaccaaggtgaatcacatctttcacactccaaatactacgccaaccata |
33337314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 497
Target Start/End: Complemental strand, 186349 - 185885
Alignment:
| Q |
18 |
caagctcgccaaaggaaattcttaactttcgggggcaattttaatctccagatacagttccagttacccggtactcggtgttgaacaattgtcatatcat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||| |||||||| |
|
|
| T |
186349 |
caagctcgccaaaggaaattcttaactttcgggggcaattttaagctccagatacagttccaattacccggta---------------ttgccatatcat |
186265 |
T |
|
| Q |
118 |
gattcagaatatctttataagcacttttaactgaataattaccatccctttcaaatgtctaaacaggcatatcatgagttaccgaaggaagcaacggagt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||||||| |||| || ||||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
186264 |
gattcagaatatctttataagcacttttaattgtataattaccatccctttaaaatttccaaacaggcatatcatgagttaccaaaggaagcaacgaagt |
186165 |
T |
|
| Q |
218 |
gttaaaaatatttctggcagtactagagtcaaagaaagtattaatgagctccacattccactgtttctggggtgtaatcaacaagtcagaaacagtgatg |
317 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
186164 |
gttaaaaatatttatggcagtactagagtcaaagaaagtattaatgagctccatattccactgtttctggggtgtaatcaacaagtcagaaacaatgata |
186065 |
T |
|
| Q |
318 |
gaaggccactccaattgatgatgagttgaaggtaaaattcgtgcaacattactgatccaaggatgatcccaaactggtatgtgttcgcctgtacctatac |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
186064 |
gaaggccactccaattgatgatgagttgaaggtaaaattcgtgcaacattactgatccaaggttgatcccaaactggtatttgttcgcctgtacctatac |
185965 |
T |
|
| Q |
418 |
tccactgaaaaccacgccgaatcacatctttagcactccaaataatacgccaaacataactgggattatggcctatgcta |
497 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| | ||||||||||| |||||| |
|
|
| T |
185964 |
tccactgaaaaccacgtcgaatcacatctttagcactccaaatactacgccaaacataagtaggattatggccaatgcta |
185885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 497
Target Start/End: Original strand, 46091458 - 46091936
Alignment:
| Q |
18 |
caagctcgccaaaggaaattcttaactttcgggggcaattttaatctccagatacagttccagttacccggtactcggtgttgaacaattgtcatatcat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||| |||||||||||||| || ||||||||||||||| || ||||| |
|
|
| T |
46091458 |
caagctcgccaaaggaaattcttaactttcgagggcaattataaactccagatacaattccagttacccggcacatggtgttgaacaattgccacatcat |
46091557 |
T |
|
| Q |
118 |
gattcagaatatctttataagcacttttaactgaataattaccatccctttcaaatgtctaaacaggcatatcatgagttaccgaaggaagcaacggagt |
217 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||| |||||||||||||||| || ||||||||| ||||||||||||| |||||||||||| ||| |
|
|
| T |
46091558 |
gattcagaatatccttatatgcacttttaactgaataagtaccatccctttcaaacttccaaacaggcacatcatgagttaccaaaggaagcaacg-agt |
46091656 |
T |
|
| Q |
218 |
gttaaaaatatttctggcagtactagagtcaaagaaagtattaatgagctccacattccactgtttctggggtgtaatcaacaagtcagaaacagtgatg |
317 |
Q |
| |
|
||||||||| ||||| |||||| || |||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
46091657 |
gttaaaaatgtttctagcagtaacagtgtcaaaaaaagtattaatgagctccatattccactgtttctcgggtgtaatcaacaagtcagaaatagtgatg |
46091756 |
T |
|
| Q |
318 |
gaaggccactccaattgatgatgagttgaaggtaaaattcgtgcaacattactgatccaaggatgatcccaaactggtatgtgttcgcctgtacctatac |
417 |
Q |
| |
|
|| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46091757 |
gatggccactctaagtgatgatgagttgaaggtaaaattcgtgcaacattactgatccaagggtgatcccaaactggtatgtgttcgcctgtacctatac |
46091856 |
T |
|
| Q |
418 |
tccactgaaaaccacgccgaatcacatctttagcactccaaataatacgccaaacataactgggattatggcctatgcta |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
46091857 |
tccactgaaaaccacgccgaatcacatctttagcactccaaatactacgccaaacataactaggattatggcctatgcta |
46091936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0577 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: scaffold0577
Description:
Target: scaffold0577; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 18 - 493
Target Start/End: Original strand, 3114 - 3589
Alignment:
| Q |
18 |
caagctcgccaaaggaaattcttaactttcgggggcaattttaatctccagatacagttccagttacccggtactcggtgttgaacaattgtcatatcat |
117 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||| ||| ||||||| |||||||||||||| || ||||||||||||| || || ||||| |
|
|
| T |
3114 |
caagctcgccaaaggaaattctttacttacgggggcaattttaaactctagatacaattccagttacccggcacacggtgttgaacaactgccacatcat |
3213 |
T |
|
| Q |
118 |
gattcagaatatctttataagcacttttaactgaataattaccatccctttcaaatgtctaaacaggcatatcatgagttaccgaaggaagcaacggagt |
217 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||| |||||| ||| || || | ||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
3214 |
gattcagaatatccttataagcacttttgactgaataagtaccattcctctcgaactttcaaacaggcacatcatgagttaccgaaggaagcaacgtagt |
3313 |
T |
|
| Q |
218 |
gttaaaaatatttctggcagtactagagtcaaagaaagtattaatgagctccacattccactgtttctggggtgtaatcaacaagtcagaaacagtgatg |
317 |
Q |
| |
|
||||||||||| ||| |||||| | ||||| |||||||| |||||||||| ||||||||||||||||||||||| |||||| ||||||| |||| | |
|
|
| T |
3314 |
gttaaaaatatatctagcagtaacattatcaaaaaaagtattgatgagctccatattccactgtttctggggtgtaagcaacaaatcagaaatagtggta |
3413 |
T |
|
| Q |
318 |
gaaggccactccaattgatgatgagttgaaggtaaaattcgtgcaacattactgatccaaggatgatcccaaactggtatgtgttcgcctgtacctatac |
417 |
Q |
| |
|
|| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3414 |
gatagccactccaagtgatgatgagttgatggtaaaattcgtgcaacattactgatccaagggtgatcccaaactggtatgtgttcgcctgtacctatac |
3513 |
T |
|
| Q |
418 |
tccactgaaaaccacgccgaatcacatctttagcactccaaataatacgccaaacataactgggattatggcctat |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
3514 |
tccactgaaaaccacgccgaatcacatctttagcactccaaatactacgccaaacataactaggattatggcctat |
3589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0607 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: scaffold0607
Description:
Target: scaffold0607; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 497
Target Start/End: Complemental strand, 4893 - 4416
Alignment:
| Q |
18 |
caagctcgccaaaggaaattcttaactttcgggggcaattttaatctccagatacagttccagttacccggtactcggtgttgaacaattgtcatatcat |
117 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||| |||| ||||||||||| ||||| |||| | | || |||||||| ||||||| || ||||| |
|
|
| T |
4893 |
caagctcgccaaaggaaattcttcactttcggg--caatcttaaactccagatacaattccatttacgcagcacacggtgttgtacaattgccacatcat |
4796 |
T |
|
| Q |
118 |
gattcagaatatctttataagcacttttaactgaataattaccatccctttcaaatgtctaaacaggcatatcatgagttaccgaaggaagcaacggagt |
217 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||| ||| ||||||| || |||||||||||||||||||| |||||||||| ||| ||| |
|
|
| T |
4795 |
gattcagaatatccttataagcacttttaactgaataagtaccgtccgtttcaaacttcgaaacaggcatatcatgagttgccgaaggaaggaacaaagt |
4696 |
T |
|
| Q |
218 |
gttaaaaatatttctggcagtactagagtcaaagaaagtattaatgagctccacattccactgtttctggggtgtaatcaacaagtcagaaacagtgatg |
317 |
Q |
| |
|
||||||||||||||| ||||| || ||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4695 |
gttaaaaatatttctagcagtgacagtctcaaagaaagtattaatgagctccatattccactatttatggggtgtaatcaacaagtcagaaacagtgatg |
4596 |
T |
|
| Q |
318 |
gaaggccactccaattgatgatgagttgaaggtaaaattcgtgcaacattactgatccaaggatgatcccaaactggtatgtgttcgcctgtacctatac |
417 |
Q |
| |
|
|| ||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4595 |
gatggccactccaagtgatgatgagttgatggtaaaattcatgcaacattactgatccaagggtgatcccaaactggtatgtgttcgcctatacctatac |
4496 |
T |
|
| Q |
418 |
tccactgaaaaccacgccgaatcacatctttagcactccaaataatacgccaaacataactgggattatggcctatgcta |
497 |
Q |
| |
|
|||||| |||| |||||| ||||||||||||||| ||||||||| |||||||||||||||| |||||||| ||||||||| |
|
|
| T |
4495 |
tccactaaaaatcacgccaaatcacatctttagccctccaaatactacgccaaacataactaggattatgacctatgcta |
4416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 497
Target Start/End: Original strand, 23770691 - 23771170
Alignment:
| Q |
19 |
aagctcgccaaaggaaattcttaactttcgggggcaattttaatctccagatacagttccagttacccggtactcggtgttgaacaattgtcatatcatg |
118 |
Q |
| |
|
|||||| ||| ||||||||||| || ||||||||||||||||| ||||| ||||| |||||||||||||| || || || || |||| || | ||| || |
|
|
| T |
23770691 |
aagctctccataggaaattcttgaccttcgggggcaattttaaactccaaatacaattccagttacccggcacacgatgatgtacaactgcctcatcgtg |
23770790 |
T |
|
| Q |
119 |
attcagaatatctttataagcacttttaactgaataattaccatccctttcaaatgtctaaacaggcatatcatgagttaccgaaggaagcaacggagtg |
218 |
Q |
| |
|
||| |||||||| || |||||||||||||||||||| ||||||||| || || || ||||||||| |||||||||||||||||| | |||||||| |
|
|
| T |
23770791 |
atttagaatatccttgtaagcacttttaactgaataggcaccatccctctcgaacttccaaacaggcacatcatgagttaccgaagggaataacggagta |
23770890 |
T |
|
| Q |
219 |
ttaaaaatatttctggcagtactagagtc-aaagaaagtattaatgagctccacattccactgtttctggggtgtaatcaacaagtcagaaacagtgatg |
317 |
Q |
| |
|
|||||||||||||| || || || ||| ||| |||| |||||||||||| | |||||| ||||| |||||||||| |||||||||||||| ||||| |
|
|
| T |
23770891 |
ttaaaaatatttctagctatagtattgtcaaaaaaaagcattaatgagctcaatattccattgtttttggggtgtaactaacaagtcagaaaccgtgata |
23770990 |
T |
|
| Q |
318 |
gaaggccactccaattgatgatgagttgaaggtaaaattcgtgcaacattactgatccaaggatgatcccaaactggtatgtgttcgcctgtacctatac |
417 |
Q |
| |
|
|| ||||| |||| |||||||||| || ||||||||||||||| ||||||||| ||| || |||||||||||||| |||||||| ||||| ||||||| |
|
|
| T |
23770991 |
gatggccatcccaaatgatgatgagaagacggtaaaattcgtgcagcattactgagccatgggtgatcccaaactggaatgtgttctcctgtgcctatac |
23771090 |
T |
|
| Q |
418 |
tccactgaaaaccacgccgaatcacatctttagcactccaaataatacgccaaacataactgggattatggcctatgcta |
497 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| |||||||| || |||||||||||||||| | |||||||||||||||| |
|
|
| T |
23771091 |
tccattgaaaaccacgacgaatcacatctttggcactccatatgctacgccaaacataactagaattatggcctatgcta |
23771170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 36 - 471
Target Start/End: Complemental strand, 10213025 - 10212586
Alignment:
| Q |
36 |
ttcttaactttcgggggcaattttaatctccagatacagttccagttacccggtactcggtgttgaacaattgtcatatcatgattcagaatatctttat |
135 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||| | ||| ||||| ||||||| || |||||||| |||| || || |||||||||||||||||| |||| |
|
|
| T |
10213025 |
ttcttaaccttcgggggcaactttaagctccaaacacaattccaattacccgacacacggtgttgtacaactgacacatcatgattcagaatatccttat |
10212926 |
T |
|
| Q |
136 |
aagcacttttaactgaataattaccatccctttcaaatgtctaaacaggcatatcatgagttaccgaaggaagcaacggagtgttaaaaatatttctg-g |
234 |
Q |
| |
|
|||||||||||||||||||| ||||||| | || || || || ||||| ||||||||| | ||||| |||||| | ||||||||||||||||| | |
|
|
| T |
10212925 |
aagcacttttaactgaataagcaccatccttctcgaacttccaagtaggcacatcatgagtcattgaagggagcaacagggtgttaaaaatatttctaag |
10212826 |
T |
|
| Q |
235 |
cagtact---agagtcaaagaaagtattaatgagctccacattccactgtttctggggtgtaatcaacaagtcagaaacagtgatggaaggccactccaa |
331 |
Q |
| |
|
|| | | | | ||| |||| ||||| || |||| |||||| ||||| | | ||||| |||||||||||||||| |||| ||||| ||||| |
|
|
| T |
10212825 |
tagaattgtaaaaaaaaaaaaaagcattaactagatccatattccattgtttttaagatgtaaccaacaagtcagaaacaatgatatgcggccattccaa |
10212726 |
T |
|
| Q |
332 |
ttgatgatgagttgaaggtaaaattcgtgcaacattactgatccaaggatgatcccaaactggtatgtgttcgcctgtacctatactccactgaaaacca |
431 |
Q |
| |
|
||||||||||| | |||| |||||||||| ||||||||| ||| ||||||| |||||||||||| ||||| ||| ||||||||||||||||||||||| |
|
|
| T |
10212725 |
atgatgatgagtacacggtacaattcgtgcagcattactgagccatggatgattccaaactggtatatgttcacctatacctatactccactgaaaacca |
10212626 |
T |
|
| Q |
432 |
cgccgaatcacatctttagcactccaaataatacgccaaa |
471 |
Q |
| |
|
| |||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
10212625 |
tgacgaatcacatctttcacactccaaatactacgccaaa |
10212586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 23797624 - 23797695
Alignment:
| Q |
17 |
acaagctcgccaaaggaaattcttaactttcgggggcaattttaatctccagatacagttccagttacccgg |
88 |
Q |
| |
|
|||||||| || ||||||||||| || |||||||| |||||||| ||||| ||||| ||| |||||||||| |
|
|
| T |
23797624 |
acaagctcttcataggaaattcttgaccttcgggggaaattttaaactccaaatacaattcaagttacccgg |
23797695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 490
Target Start/End: Original strand, 40075325 - 40075380
Alignment:
| Q |
435 |
cgaatcacatctttagcactccaaataatacgccaaacataactgggattatggcc |
490 |
Q |
| |
|
||||| |||||||| || |||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
40075325 |
cgaattacatctttcacattccaaatactacgccaaacataactaggattatggcc |
40075380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 177; Significance: 3e-95; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 17 - 497
Target Start/End: Original strand, 51192786 - 51193266
Alignment:
| Q |
17 |
acaagctcgccaaaggaaattcttaactttcgggggcaattttaatctccagatacagttccagttacccggtactcggtgttgaacaattgtcatatca |
116 |
Q |
| |
|
|||||||| ||| || |||||||| || || |||||||||||||| ||||| ||||| |||||||||||||| || |||||||| |||| || || |||| |
|
|
| T |
51192786 |
acaagctctccatagaaaattcttgacctttgggggcaattttaaactccaaatacaattccagttacccggcacacggtgttgtacaactgccacatca |
51192885 |
T |
|
| Q |
117 |
tgattcagaatatctttataagcacttttaactgaataattaccatccctttcaaatgtctaaacaggcatatcatgagttaccgaaggaagcaacggag |
216 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||| ||||||||| || || || ||||||||| |||||||||||||||||| | | |||| |
|
|
| T |
51192886 |
tgattcagaatatccttgtaagcacttttaactgaataggcaccatccctctcgaaattccaaacaggcacatcatgagttaccgaagggaatagtggag |
51192985 |
T |
|
| Q |
217 |
tgttaaaaatatttctggcagtactagagtcaaagaaagtattaatgagctccacattccactgtttctggggtgtaatcaacaagtcagaaacagtgat |
316 |
Q |
| |
|
| |||||||||||||| |||||| | |||||| ||| |||||| ||||||| |||||| ||||| ||| |||||| |||||| | |||||| || || |
|
|
| T |
51192986 |
tattaaaaatatttctagcagtagcactgtcaaaaaaaacattaattagctccatattccattgtttttggtgtgtaaccaacaaattagaaacggtaat |
51193085 |
T |
|
| Q |
317 |
ggaaggccactccaattgatgatgagttgaaggtaaaattcgtgcaacattactgatccaaggatgatcccaaactggtatgtgttcgcctgtacctata |
416 |
Q |
| |
|
|| ||||||||||| ||||||||||| || ||||||||||||| |||| |||| ||| || || |||||||||| |||||||| ||| | ||||| |
|
|
| T |
51193086 |
agatggccactccaaatgatgatgagtagacggtaaaattcgtgttgcattcctgagccatgggtgctcccaaactgaaatgtgttctcctatgcctatg |
51193185 |
T |
|
| Q |
417 |
ctccactgaaaaccacgccgaatcacatctttagcactccaaataatacgccaaacataactgggattatggcctatgcta |
497 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| |||||||| || |||||||||||||||| |||||||||||||||||| |
|
|
| T |
51193186 |
ctccactgaaaaccacggcgaatcacatatttggcactccatatgctacgccaaacataactaggattatggcctatgcta |
51193266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 17 - 497
Target Start/End: Original strand, 43019269 - 43019749
Alignment:
| Q |
17 |
acaagctcgccaaaggaaattcttaactttcgggggcaattttaatctccagatacagttccagttacccggtactcggtgttgaacaattgtcatatca |
116 |
Q |
| |
|
|||||||| ||| | ||||||||| || ||||||||||||||||| ||||| ||||| || ||||||||||| || || |||| |||| | || |||| |
|
|
| T |
43019269 |
acaagctctccatatgaaattcttgaccttcgggggcaattttaagctccaaatacaatttcagttacccggcacacgtggttgtacaactaccacatca |
43019368 |
T |
|
| Q |
117 |
tgattcagaatatctttataagcacttttaactgaataattaccatccctttcaaatgtctaaacaggcatatcatgagttaccgaaggaagcaacggag |
216 |
Q |
| |
|
||||||| |||||| || || | ||||||||||||||| ||||||| | || || || |||||| || ||||||||||||| |||| | ||||||| |
|
|
| T |
43019369 |
tgattcaaaatatccttgtaggtacttttaactgaatagacaccatccttctcgaacttccaaacagacacatcatgagttaccaaagggaataacggag |
43019468 |
T |
|
| Q |
217 |
tgttaaaaatatttctggcagtactagagtcaaagaaagtattaatgagctccacattccactgtttctggggtgtaatcaacaagtcagaaacagtgat |
316 |
Q |
| |
|
| ||||||||||| | |||||| | |||||| | || |||||| | ||||| |||||| ||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
43019469 |
tattaaaaatattcttagcagtagcattgtcaaaaagagcattaattaactccatattccattgtttttggggtgtaaccaacaagtcagaaacagtgat |
43019568 |
T |
|
| Q |
317 |
ggaaggccactccaattgatgatgagttgaaggtaaaattcgtgcaacattactgatccaaggatgatcccaaactggtatgtgttcgcctgtacctata |
416 |
Q |
| |
|
|| ||||||||||| |||||||||| || |||||||||||||| ||||||| | ||| || ||||||||||||| |||||||| ||||| |||||| |
|
|
| T |
43019569 |
agatggccactccaaatgatgatgaggagactgtaaaattcgtgcagcattactaagccatgggtgatcccaaactgaaatgtgttcccctgtgcctata |
43019668 |
T |
|
| Q |
417 |
ctccactgaaaaccacgccgaatcacatctttagcactccaaataatacgccaaacataactgggattatggcctatgcta |
497 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| |||||||| || |||||||||||||||| |||||||||||||||||| |
|
|
| T |
43019669 |
ctccactgaaaaccacgacgaatcacgtctttggcactccatatgctacgccaaacataactaggattatggcctatgcta |
43019749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 321 - 497
Target Start/End: Complemental strand, 21688734 - 21688558
Alignment:
| Q |
321 |
ggccactccaattgatgatgagttgaaggtaaaattcgtgcaacattactgatccaaggatgatcccaaactggtatgtgttcgcctgtacctatactcc |
420 |
Q |
| |
|
||||||||||| || |||||||| | |||| || || ||| ||||||||| || || |||||||||||||| |||||||| ||||| || ||||||| |
|
|
| T |
21688734 |
ggccactccaagtgttgatgagtatacggtataagtctggcagcattactgagtcatgggtgatcccaaactggaatgtgttctcctgtgccaatactcc |
21688635 |
T |
|
| Q |
421 |
actgaaaaccacgccgaatcacatctttagcactccaaataatacgccaaacataactgggattatggcctatgcta |
497 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||| ||| || |||| |||||||| |||||||||||||||||| |
|
|
| T |
21688634 |
actgaaaaccacggcgaatcacatctttggcactccatatactatgccatacataactaggattatggcctatgcta |
21688558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 17 - 461
Target Start/End: Complemental strand, 13441398 - 13440956
Alignment:
| Q |
17 |
acaagctcgccaaaggaaattcttaactttcgggggcaattttaatctccagatacagttccagttacccggtactcggtgttgaacaattgtcatatca |
116 |
Q |
| |
|
|||||||| ||| | ||| |||||||| ||||| ||||||||||| ||| | | ||| ||||| |||||| | || | ||||| |||| || | |||| |
|
|
| T |
13441398 |
acaagctctccacatgaagttcttaaccttcggaggcaattttaagctctaaacacaattccaattacccagcacaagatgttgtacaactgcaacatca |
13441299 |
T |
|
| Q |
117 |
tgattcagaatatctttataagcacttttaactgaataattaccatccctttcaaatgtctaaacaggcatatcatgagttaccgaaggaagcaacggag |
216 |
Q |
| |
|
||||||| ||||||| |||||||| ||||||| ||||| ||||||| | || || || || |||||| ||||| ||| |||||||| || || | |
|
|
| T |
13441298 |
tgattcacaatatctagataagcacatttaactaaataagaaccatccttctcgaacttccaagcaggcacatcataagtcaccgaagggag----gggg |
13441203 |
T |
|
| Q |
217 |
tgttaaaaatatttctggcagtactagagtcaaagaaa--gtattaatgagctccacattccactgtttctggggtgtaatcaacaagtcagaaacagtg |
314 |
Q |
| |
|
||| |||||| ||||| | |||| | |||||| ||| | ||||| ||||| | |||||| ||||| | | |||| ||| |||||| |||||||| |
|
|
| T |
13441202 |
tgtgaaaaatgtttctaggagtagcattgtcaaaaaaaaagcattaagtagctctatattccaatgttttttagatgtagccaaaaagtcaaaaacagtg |
13441103 |
T |
|
| Q |
315 |
atggaaggccactccaattgatgatgagttgaaggtaaaattcgtgcaacattactgatccaaggatgatcccaaactggtatgtgttcgcctgtaccta |
414 |
Q |
| |
|
|| ||||||||||| ||||||||||| || | | |||||||||||||||||||| ||| ||||||| |||||||||||| ||||| |||| ||| |
|
|
| T |
13441102 |
atatgtggccactccaaatgatgatgagtagacaggacaattcgtgcaacattactgagccatggatgattccaaactggtatatgttcaactgtgcctt |
13441003 |
T |
|
| Q |
415 |
tactccactgaaaaccacgccgaatcacatctttagcactccaaata |
461 |
Q |
| |
|
|||||||| ||||| ||| |||||||| |||| |||||||||||| |
|
|
| T |
13441002 |
tactccacataaaactacgatgaatcacacctttcgcactccaaata |
13440956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 199
Target Start/End: Complemental strand, 21688976 - 21688822
Alignment:
| Q |
45 |
ttcgggggcaattttaatctccagatacagttccagttacccggtactcggtgttgaacaattgtcatatcatgattcagaatatctttataagcacttt |
144 |
Q |
| |
|
|||||||||| |||||| ||||| | ||| ||||| ||| | || || |||| ||| |||| || | ||||||||||||||||||||||| |||||||| |
|
|
| T |
21688976 |
ttcgggggcagttttaaactccaaaaacaattccaattatctggcacacggtattgtacaactgctacatcatgattcagaatatctttatgagcacttt |
21688877 |
T |
|
| Q |
145 |
taactgaataattaccatccctttcaaatgtctaaacaggcatatcatgagttac |
199 |
Q |
| |
|
||||| |||| | |||||| || || || |||||||||||||||||||||| |
|
|
| T |
21688876 |
taactaaatatgcatcatcccactcgaacttccaaacaggcatatcatgagttac |
21688822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 8457537 - 8457438
Alignment:
| Q |
30 |
aggaaattcttaactttcgggggcaattttaatctccagatacagttccagttacccggtactcggtgttgaacaattgtcatatcatgattcagaatat |
129 |
Q |
| |
|
||||||||||| || || |||||||||||||| ||||| ||||| || |||||| ||| || |||| ||| |||| || || ||||||||| ||||||| |
|
|
| T |
8457537 |
aggaaattcttgacctttgggggcaattttaaactccaaatacaatttcagttatccgacacacggtattgtacaactgccaaatcatgatttagaatat |
8457438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 140; Significance: 4e-73; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 17 - 497
Target Start/End: Complemental strand, 215690 - 215208
Alignment:
| Q |
17 |
acaagctcgccaaaggaaattcttaactttcgggggcaattttaatctccagatacagttccagttacccggtactcggtgttgaacaattgtcatatca |
116 |
Q |
| |
|
|||||||| ||| ||||||||||| | |||| ||| |||||||||||||| ||||| || ||||||| | || |||||||| | || | ||||||| |
|
|
| T |
215690 |
acaagctctccataggaaattcttgaacttcgagggaaattttaatctccaaatacaactcgagttacctgacacacggtgttgtaaaacttccatatca |
215591 |
T |
|
| Q |
117 |
tgattcagaatatctttataagcacttttaactgaataattaccatccctttcaaatgtctaaacaggcatatcatgagttaccgaaggaagcaacggag |
216 |
Q |
| |
|
||||||| |||||| || |||||||||||||||||| | ||||||| | || || | ||| ||| | |||||||||||||||||| | ||||||| |
|
|
| T |
215590 |
tgattcataatatccttgtaagcacttttaactgaacaggcaccatccttctcgaactttcaaagaggaacatcatgagttaccgaagggaataacggag |
215491 |
T |
|
| Q |
217 |
tgttaaaaatatttctggcagtactagagtcaaagaaagta--ttaatgagctccacattccactgtttctggggtgtaatcaacaagtcagaaacagtg |
314 |
Q |
| |
|
| ||||||||||||| |||||| | || ||| ||| | ||||| ||||||| |||||| ||||| ||||||||| ||||||||||||||| ||| |
|
|
| T |
215490 |
taataaaaatatttctagcagtagaattgtaaaaaaaaaaacattaattagctccatattccattgttttcggggtgtaaccaacaagtcagaaaccgtg |
215391 |
T |
|
| Q |
315 |
atggaaggccactccaattgatgatgagttgaaggtaaaattcgtgcaacattactgatccaaggatgatcccaaactggtatgtgttcgcctgtaccta |
414 |
Q |
| |
|
|| || || || ||||| ||||||||||| | |||||||||||||| |||||||| ||| || |||||||||||||| |||||||| ||||| |||| |
|
|
| T |
215390 |
atagatggtcattccaaatgatgatgagtaaacagtaaaattcgtgcagtattactgagccatgggtgatcccaaactggaatgtgttctcctgtgccta |
215291 |
T |
|
| Q |
415 |
tactccactgaaaaccacgccgaatcacatctttagcactccaaataatacgccaaacataactgggattatggcctatgcta |
497 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| |||||||| || |||||||||||||||| |||||||| ||||||||| |
|
|
| T |
215290 |
tactccactgaaaaccacgacgaatcacgtctttggcactccatatgctacgccaaacataactaggattatgacctatgcta |
215208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 131; Significance: 9e-68; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 191 - 497
Target Start/End: Complemental strand, 55523 - 55217
Alignment:
| Q |
191 |
atgagttaccgaaggaagcaacggagtgttaaaaatatttctggcagtactagagtcaaagaaagtattaatgagctccacattccactgtttctggggt |
290 |
Q |
| |
|
||||||||||||||| | ||| |||| |||||||||||||| |||||| | ||||| |||| |||||| ||||||| |||||| ||||| || ||| |
|
|
| T |
55523 |
atgagttaccgaagggaataacagagtattaaaaatatttctagcagtatcattatcaaaaaaagcattaattagctccatattccattgtttttgcggt |
55424 |
T |
|
| Q |
291 |
gtaatcaacaagtcagaaacagtgatggaaggccactccaattgatgatgagttgaaggtaaaattcgtgcaacattactgatccaaggatgatcccaaa |
390 |
Q |
| |
|
|||| ||||||||||||||||||||| || ||||||||||| ||||||||||| || || ||||||||||| ||||| || ||| || |||||||||| |
|
|
| T |
55423 |
gtaaccaacaagtcagaaacagtgatagatggccactccaaatgatgatgagtagacagttaaattcgtgcatcattattgggccatggctgatcccaaa |
55324 |
T |
|
| Q |
391 |
ctggtatgtgttcgcctgtacctatactccactgaaaaccacgccgaatcacatctttagcactccaaataatacgccaaacataactgggattatggcc |
490 |
Q |
| |
|
|||| || ||||| | ||| ||||||||||||||||||||||| |||||||||||||| |||||||| || ||||||||||||||| ||||||||||| |
|
|
| T |
55323 |
ctggaatatgttctcttgtgcctatactccactgaaaaccacgacgaatcacatctttggcactccatatgcaacgccaaacataactaggattatggcc |
55224 |
T |
|
| Q |
491 |
tatgcta |
497 |
Q |
| |
|
||||||| |
|
|
| T |
55223 |
tatgcta |
55217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 57624 - 57555
Alignment:
| Q |
17 |
acaagctcgccaaaggaaattcttaactttcgggggcaattttaatctccagatacagttccagttaccc |
86 |
Q |
| |
|
|||||||| ||| || |||||||| | ||||||||||||||||| ||||| ||||| || ||||||||| |
|
|
| T |
57624 |
acaagctctccatagaaaattcttgatcttcgggggcaattttaaactccaaatacaatttcagttaccc |
57555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0200 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 27851 - 28073
Alignment:
| Q |
17 |
acaagctcgccaaaggaaattcttaactttcgggggcaattttaatctccagatacagttccagttacccggtactcggtgttgaacaattgtcatatca |
116 |
Q |
| |
|
|||| ||| ||||| ||||||||| || ||||||||||||||||| ||||| ||||| || || ||||||| || |||||||| |||| | || |||| |
|
|
| T |
27851 |
acaaactctccaaatgaaattcttgaccttcgggggcaattttaaactccaaatacaatttcaattacccgacacacggtgttgtacaacggccacatca |
27950 |
T |
|
| Q |
117 |
tgattcagaatatctttataagcacttttaactgaataattaccatccctttcaaatgtctaaacaggcatatcatgagttaccgaaggaagcaacggag |
216 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||| | ||| || || || || ||||||||| ||||||||| ||||||| | ||||||| |
|
|
| T |
27951 |
tgattcagaatatccttgtaagcacttttaactgaatagacattatctctctcgaacttcgaaacaggcacatcatgagtaaccgaagataataacggag |
28050 |
T |
|
| Q |
217 |
tgttaaaaatatttctggcagta |
239 |
Q |
| |
|
| |||||||||||| | |||||| |
|
|
| T |
28051 |
tattaaaaatatttttagcagta |
28073 |
T |
|
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