View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13386_low_19 (Length: 492)
Name: NF13386_low_19
Description: NF13386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13386_low_19 |
 | |
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| [»] chr4 (6 HSPs) |
| |
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| [»] scaffold0002 (5 HSPs) |
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| [»] scaffold0702 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold1779 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0008 (1 HSPs) |
| | |
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| [»] scaffold0625 (1 HSPs) |
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| [»] scaffold0330 (2 HSPs) |
| | |
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| [»] scaffold0477 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 95 - 492
Target Start/End: Complemental strand, 18343691 - 18343294
Alignment:
| Q |
95 |
ttttttggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataa |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18343691 |
ttttttggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataa |
18343592 |
T |
|
| Q |
195 |
ccatcaactataaccccaaaagaaccagattccgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaata |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18343591 |
ccatcaactataaccccaaaagaaccagattccgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaata |
18343492 |
T |
|
| Q |
295 |
tgctcttcaggcacttgagcccgcttggatcacatctagacaaatagaagcagggcgacgggcaatgtcacgaaatgttcgccgaggtgggaaaatatgg |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18343491 |
tgctcttcaggcacttgagcccgcttggatcacatctagacaaatagaagcagggcgacgggcaatgtcacgaaatgttcgccgaggtgggaaaatatgg |
18343392 |
T |
|
| Q |
395 |
gtacgcatatttccagacaaacccgttacagtaagacctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaa |
492 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18343391 |
gtacgcatatttccagacaaacctgttacagtaagacctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaa |
18343294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 2 - 97
Target Start/End: Complemental strand, 18343811 - 18343716
Alignment:
| Q |
2 |
ggtctataagaatccatatttggttctatatcaaagcaagatatacaaatttctaatatgtcaaaaaatcccgcgattgtattctattttaaattt |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18343811 |
ggtctataagaatccatatttggttctatatcaaagcaagatatacaaatttctaatatgtcaaaaaatcccgcgattgtattctattttaaattt |
18343716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 506506 - 506555
Alignment:
| Q |
132 |
aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
506506 |
aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg |
506555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 18042124 - 18042075
Alignment:
| Q |
132 |
aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18042124 |
aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg |
18042075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 108 - 263
Target Start/End: Original strand, 50593542 - 50593696
Alignment:
| Q |
108 |
tatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatcaactataa |
207 |
Q |
| |
|
||||||| |||||||||| | ||| ||||||| |||| |||||||| | || | ||| |||||||||||| ||||||| ||| ||||| |||||||| |
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|
| T |
50593542 |
tattttttgatcgatttatgcacgatgagccgtgtgagacgaaaatctaacgtgcagtt-tgtaatagagatagaattgataaacaaccactaactataa |
50593640 |
T |
|
| Q |
208 |
ccccaaaagaaccagattccgtaaacaacatcgaggaagaatgaaaggaaaagcct |
263 |
Q |
| |
|
|||| |||||||||||| | ||||||||||| ||||| ||| ||| ||||||||| |
|
|
| T |
50593641 |
cccccaaagaaccagatccaataaacaacatcaaggaaaaattaaaagaaaagcct |
50593696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 18179734 - 18179696
Alignment:
| Q |
131 |
gaggagccgtatgaggtgaaaatctcatgtacggttctg |
169 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
18179734 |
gaggagccgtatgagatgaaaatctcacgtacggttctg |
18179696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 354; Significance: 0; HSPs: 5)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 95 - 492
Target Start/End: Original strand, 163678 - 164075
Alignment:
| Q |
95 |
ttttttggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataa |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
163678 |
ttttttggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataa |
163777 |
T |
|
| Q |
195 |
ccatcaactataaccccaaaagaaccagattccgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaata |
294 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
163778 |
ctatcaactataaccccaaaagaaccagattccgcaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcgaaaaata |
163877 |
T |
|
| Q |
295 |
tgctcttcaggcacttgagcccgcttggatcacatctagacaaatagaagcagggcgacgggcaatgtcacgaaatgttcgccgaggtgggaaaatatgg |
394 |
Q |
| |
|
|| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
163878 |
tgttctttaggcacttgagcccgcttggatcacatctagacaaatagaagtagggcgatgggcaatgtcacgaaatgttcgccgaggtgggaaaatatgg |
163977 |
T |
|
| Q |
395 |
gtacgcatatttccagacaaacccgttacagtaagacctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaa |
492 |
Q |
| |
|
||| ||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
163978 |
gtatgcatatttccagacaaacctgttacattaagatctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaa |
164075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 125 - 492
Target Start/End: Complemental strand, 278382 - 278013
Alignment:
| Q |
125 |
attcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaata--accatcaactataaccccaaaagaaccag |
222 |
Q |
| |
|
||||||||||||| | ||||| |||| |||||||| | ||| || | ||||||||||| | ||||| | |||||| |||||||||||||||||||||| |
|
|
| T |
278382 |
attcgcgaggagctggatgagaagaaactctcatgtccagttttggagtagagatggaactaagaaagagaaccatcgactataaccccaaaagaaccag |
278283 |
T |
|
| Q |
223 |
attccgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaatatgctcttcaggcacttgagcccgcttgg |
322 |
Q |
| |
|
||| || ||||||||| |||||||||||||||||||| ||| ||||| ||| |||| || || | |||||||||||| |||||||| ||||||||| |
|
|
| T |
278282 |
atttcgcaaacaacatagaggaagaatgaaaggaaaatccttccgaggcaatcgtatttgttttggtagatatgctcttcaagcacttgaacccgcttgg |
278183 |
T |
|
| Q |
323 |
atcacatctagacaaatagaagcagggcgacgggcaatgtcacgaaatgttcgccgaggtgggaaaatatgggtacgcatatttccagacaaacccgtta |
422 |
Q |
| |
|
||||| | ||||| ||||||||||| ||| | ||||| ||||| ||| || || ||||| |||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
278182 |
atcacggcgagacagatagaagcaggacgaagagcaataacacgatatgcacgtcgtggtggaaaaatatgggtacgtatatttcccgacaaaccggtta |
278083 |
T |
|
| Q |
423 |
cagtaagacctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaa |
492 |
Q |
| |
|
|| ||||||| || ||||| |||||||| |||||||| || || ||||||||||||||||| || ||||| |
|
|
| T |
278082 |
cactaagacccacggaaacacgtatgggctcgggaaaggggtcccccgaatattgggtagccgttgttaa |
278013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 163532 - 163589
Alignment:
| Q |
2 |
ggtctataagaatccatatttggttctatatcaaagcaagatatacaaatttctaata |
59 |
Q |
| |
|
||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
163532 |
ggtctataaaaatccatatttggttttatatccaagcaagatatacaaatttctaata |
163589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 190645 - 190687
Alignment:
| Q |
130 |
cgaggagccgtatgaggtgaaaatctcatgtacggttctgtaa |
172 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
190645 |
cgaggagccgtatgaggtgaaaatctcatgtacggttctgtaa |
190687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 163610 - 163648
Alignment:
| Q |
59 |
atgtcaaaaaatcccgcgattgtattctattttaaattt |
97 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
163610 |
atgtcaaaaaatcccgcgattctattctattttaaattt |
163648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0702 (Bit Score: 260; Significance: 1e-144; HSPs: 1)
Name: scaffold0702
Description:
Target: scaffold0702; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 193 - 492
Target Start/End: Original strand, 6873 - 7172
Alignment:
| Q |
193 |
aaccatcaactataaccccaaaagaaccagattccgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaa |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6873 |
aaccatcaactataaccccaaaagaaccagatttcgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaa |
6972 |
T |
|
| Q |
293 |
tatgctcttcaggcacttgagcccgcttggatcacatctagacaaatagaagcagggcgacgggcaatgtcacgaaatgttcgccgaggtgggaaaatat |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||| |||||||||||||||||| |
|
|
| T |
6973 |
tatgctcttcaggcacttgagcccgcttggatcacatctagacaaatagaagcaaggcgacgggcaatatcacaaaatgtttgccgaggtgggaaaatat |
7072 |
T |
|
| Q |
393 |
gggtacgcatatttccagacaaacccgttacagtaagacctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaa |
492 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7073 |
gggtacgtatatttccagacaaacctgttacagtaatacctaccgaaacgcgtatgggttcaggaaaagaatctcccgaatattgggtagctgtcgttaa |
7172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 260; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 193 - 492
Target Start/End: Original strand, 35194958 - 35195257
Alignment:
| Q |
193 |
aaccatcaactataaccccaaaagaaccagattccgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaa |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35194958 |
aaccatcaactataaccccaaaagaaccagatttcgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaa |
35195057 |
T |
|
| Q |
293 |
tatgctcttcaggcacttgagcccgcttggatcacatctagacaaatagaagcagggcgacgggcaatgtcacgaaatgttcgccgaggtgggaaaatat |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||| |||||||||||||||||| |
|
|
| T |
35195058 |
tatgctcttcaggcacttgagcccgcttggatcacatctagacaaatagaagcaaggcgacgggcaatatcacaaaatgtttgccgaggtgggaaaatat |
35195157 |
T |
|
| Q |
393 |
gggtacgcatatttccagacaaacccgttacagtaagacctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaa |
492 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35195158 |
gggtacgtatatttccagacaaacctgttacagtaatacctaccgaaacgcgtatgggttcaggaaaagaatctcccgaatattgggtagctgtcgttaa |
35195257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1779 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold1779
Description:
Target: scaffold1779; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 126 - 492
Target Start/End: Original strand, 48 - 414
Alignment:
| Q |
126 |
ttcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatcaactataaccccaaaagaaccagatt |
225 |
Q |
| |
|
|||||||||||| | ||||| |||| |||||||| | |||||||| ||||||||||||| | ||| || ||||||||||||||||||||||||| |||| |
|
|
| T |
48 |
ttcgcgaggagctggatgagaagaaactctcatgtccagttctgtagtagagatggaattcataaacaaacatcaactataaccccaaaagaacccgatt |
147 |
T |
|
| Q |
226 |
ccgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaatatgctcttcaggcacttgagcccgcttggatc |
325 |
Q |
| |
|
|||||||||||| ||||||||||||| || | | | |||||||||||| |||| ||||| | |||||||||||| |||||||| ||||||||||| |
|
|
| T |
148 |
tcgtaaacaacatagaggaagaatgaaggggatatcttatcgaggtaatcggatttgtttcggtagatatgctcttcaagcacttgaacccgcttggatt |
247 |
T |
|
| Q |
326 |
acatctagacaaatagaagcagggcgacgggcaatgtcacgaaatgttcgccgaggtgggaaaatatgggtacgcatatttccagacaaacccgttacag |
425 |
Q |
| |
|
|||||||||||||||||||| ||||| || |||||| |||||||||| ||||| ||||| ||| |||||||||| ||||||||||||||||| ||||| | |
|
|
| T |
248 |
acatctagacaaatagaagcggggcgccgcgcaatgacacgaaatgtacgccgtggtggaaaactatgggtacgtatatttccagacaaaccagttacgg |
347 |
T |
|
| Q |
426 |
taagacctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaa |
492 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
348 |
taagacctacagaaacacgtatgggttcggggaaaggatctcccgagtattgggtagctgtcgttaa |
414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 120 - 221
Target Start/End: Complemental strand, 54630277 - 54630176
Alignment:
| Q |
120 |
gatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatcaactataaccccaaaagaac |
219 |
Q |
| |
|
|||||||||| ||||||| ||||| ||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
54630277 |
gatttattcgtgaggagctgtatggggtgaaaatctcatgtacgattttgtaatagagatggaattgagaaataactatcaactataacaccaaaagaac |
54630178 |
T |
|
| Q |
220 |
ca |
221 |
Q |
| |
|
|| |
|
|
| T |
54630177 |
ca |
54630176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 17223756 - 17223707
Alignment:
| Q |
132 |
aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17223756 |
aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg |
17223707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 13226970 - 13227011
Alignment:
| Q |
130 |
cgaggagccgtatgaggtgaaaatctcatgtacggttctgta |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13226970 |
cgaggagccgtatgaggtgaaaatctcatgtacggttctgta |
13227011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 419 - 492
Target Start/End: Complemental strand, 36841142 - 36841069
Alignment:
| Q |
419 |
gttacagtaagacctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaa |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36841142 |
gttacagtaagacctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaa |
36841069 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 17442435 - 17442387
Alignment:
| Q |
133 |
ggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg |
181 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
17442435 |
ggagccgtacgaggtgaaaatctcatgtacggttttgtaatagagatgg |
17442387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 390 - 492
Target Start/End: Original strand, 10258309 - 10258411
Alignment:
| Q |
390 |
tatgggtacgcatatttccagacaaacccgttacagtaagacctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgt |
489 |
Q |
| |
|
|||||||| ||||| |||||||||||| |||| |||||||||||| |||||| ||||||||| |||||| ||||||||||||||||||||||||||| | |
|
|
| T |
10258309 |
tatgggtatgcataattccagacaaacttgttagagtaagacctactgaaacgtgtatgggtttgggaaacggatctcccgaatattgggtagctgtcat |
10258408 |
T |
|
| Q |
490 |
taa |
492 |
Q |
| |
|
||| |
|
|
| T |
10258409 |
taa |
10258411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 19153829 - 19153780
Alignment:
| Q |
132 |
aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg |
181 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19153829 |
aggagccgtacgaggtgaaaatctcatgtacggttctgtaatagagatgg |
19153780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 95 - 154
Target Start/End: Original strand, 31058806 - 31058865
Alignment:
| Q |
95 |
ttttttggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatc |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31058806 |
ttttttggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatc |
31058865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 31058724 - 31058776
Alignment:
| Q |
45 |
tacaaatttctaatatgtcaaaaaatcccgcgattgtattctattttaaattt |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31058724 |
tacaaatttctaatatgtcaaaaaatcccgcgattgtattctattttaaattt |
31058776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 14543003 - 14543052
Alignment:
| Q |
132 |
aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14543003 |
aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg |
14543052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 4639385 - 4639423
Alignment:
| Q |
131 |
gaggagccgtatgaggtgaaaatctcatgtacggttctg |
169 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
4639385 |
gaggagccgtatgagatgaaaatctcacgtacggttctg |
4639423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 265217 - 265168
Alignment:
| Q |
132 |
aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg |
181 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
265217 |
aggagccgtatgaggtgaaaatcttatgtacggttctgtaatagagatgg |
265168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 6930438 - 6930487
Alignment:
| Q |
132 |
aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6930438 |
aggagccgtatgaggtgaaaatctcatgtacggttctgtattagagatgg |
6930487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 1399882 - 1399923
Alignment:
| Q |
130 |
cgaggagccgtatgaggtgaaaatctcatgtacggttctgta |
171 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1399882 |
cgaggagtcgtatgaggtgaaaatctcatgtacggttctgta |
1399923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 18961072 - 18961112
Alignment:
| Q |
130 |
cgaggagccgtatgaggtgaaaatctcatgtacggttctgta |
171 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
18961072 |
cgaggagcc-tatgaggtgaaaatctcatgtacggttctgta |
18961112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 18993033 - 18993073
Alignment:
| Q |
130 |
cgaggagccgtatgaggtgaaaatctcatgtacggttctgta |
171 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
18993033 |
cgaggagcc-tatgaggtgaaaatctcatgtacggttctgta |
18993073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0625 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0625
Description:
Target: scaffold0625; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 8664 - 8623
Alignment:
| Q |
130 |
cgaggagccgtatgaggtgaaaatctcatgtacggttctgta |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8664 |
cgaggagccgtatgaggtgaaaatctcatgtacggttctgta |
8623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0330 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0330
Description:
Target: scaffold0330; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 13478 - 13433
Alignment:
| Q |
14 |
tccatatttggttctatatcaaagcaagatatacaaatttctaata |
59 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13478 |
tccatatttggttctatatcaaagcaaaatatacaaatttctaata |
13433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0330; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 13412 - 13374
Alignment:
| Q |
59 |
atgtcaaaaaatcccgcgattgtattctattttaaattt |
97 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13412 |
atgtcaaaaaatctcgcgattgtattctattttaaattt |
13374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 308 - 384
Target Start/End: Complemental strand, 5478497 - 5478421
Alignment:
| Q |
308 |
cttgagcccgcttggatcacatctagacaaatagaagcagggcgacgggcaatgtcacgaaatgttcgccgaggtgg |
384 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| || ||||| |||||||||||||||||| |||||||| |
|
|
| T |
5478497 |
cttgagcctgcttggatcacatctagacaaatagaaatgaggtgacggataatgtcacgaaatgttcgtcgaggtgg |
5478421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 31266029 - 31265991
Alignment:
| Q |
131 |
gaggagccgtatgaggtgaaaatctcatgtacggttctg |
169 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
31266029 |
gaggagccgtatgagatgaaaatctcacgtacggttctg |
31265991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 49771397 - 49771361
Alignment:
| Q |
132 |
aggagccgtatgaggtgaaaatctcatgtacggttct |
168 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
49771397 |
aggagccgtatgaggtgaaaatcttatgtacagttct |
49771361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 8731 - 8693
Alignment:
| Q |
131 |
gaggagccgtatgaggtgaaaatctcatgtacggttctg |
169 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
8731 |
gaggagccgtatgagatgaaaatctcacgtacggttctg |
8693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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