View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13386_low_20 (Length: 473)
Name: NF13386_low_20
Description: NF13386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13386_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 18 - 458
Target Start/End: Complemental strand, 30346802 - 30346362
Alignment:
| Q |
18 |
agaacatgtaaccatactcatcatcaaccaaaagagtacctttaatgcttggaaaccttgatgccaaaagaggcttcccactcatcatagcctccatcaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30346802 |
agaacatgtaaccatactcatcatcaaccaaaagagtacctttaatgcttggaaaccttgatgccaaaagaggcttcccactcatcatagcctccatcaa |
30346703 |
T |
|
| Q |
118 |
agtaagatcaagcccttgcggcctaagtgttggattgacgaaaatgtcaatagcattataaaatgctttcaacatggaaggactcattgatcctagaaca |
217 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30346702 |
agtaagatcaagcccttgtggcctaagtgttggattgacgaaaatgtcaatagcattataaaatgctttcaacatggaaggactcattgatcctagaaca |
30346603 |
T |
|
| Q |
218 |
agaacttggtttcctaaatccttgtacctgttcccccatggtccagaaccagcaataatcaaataaacattagggtgttttgttattagctttgaatacg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30346602 |
agaacttggtttcctaaatccttgtacctgttcccccatggtccagaaccagcaataatcaaataaacattagggtgttttgttattagctttgaatacg |
30346503 |
T |
|
| Q |
318 |
cttcatgaagcaaaggatgacctttgtctttaactaatctccctgctacaccaagtactaaacttgcattgcttggaatcccaattttggttctaaattt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30346502 |
cttcatgaagcaaaggatgacctttgtctttaactaatctccctgctacaccaagtactaaacttgcattgcttggaatcccaattttggttctaaattt |
30346403 |
T |
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| Q |
418 |
ccttcccaattcagcatcttctccaaactcatcctcatcaa |
458 |
Q |
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| T |
30346402 |
ccttcccaattcagcatcttctccaaactcatcctcatcaa |
30346362 |
T |
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Back To:
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Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 458
Target Start/End: Original strand, 10840842 - 10841280
Alignment:
| Q |
20 |
aacatgtaaccatactcatcatcaaccaaaagagtacctttaatgcttggaaaccttgatgccaaaagaggcttcccactcatcatagcctccatcaaag |
119 |
Q |
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|||||||||||| | ||||||||||| | || | |||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||| | |
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| T |
10840842 |
aacatgtaaccaaattcatcatcaacaagaatactacctttaatgcttggaaaccttgatgccaaaagtggctttccaatcatcatagcctccatcagtg |
10840941 |
T |
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| Q |
120 |
taagatcaagcccttgcggcctaagtgttggattgacgaaaatgtcaatagcattataaaatgctttcaacatggaaggactcattgatcctagaacaag |
219 |
Q |
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|||||||||| ||||| || || | ||| ||||| || ||||| |||||||||||||| |||||| | ||||| |||||| |||||||||| |||||||| |
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| T |
10840942 |
taagatcaagtccttgtggtcttaatgtaggattaacaaaaatatcaatagcattatagaatgctcttaacatagaaggattcattgatccaagaacaag |
10841041 |
T |
|
| Q |
220 |
aacttggtttcctaaatccttgtacctgttcccccatggtccagaaccagcaataatcaaataaacattagggtgttttgttattagctttgaatacgct |
319 |
Q |
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||||||||| || | |||||| ||||| ||| ||||||||||||||||||| | ||||||||| ||||| | || |||||||| ||| ||||| | ||| |
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| T |
10841042 |
aacttggttcccgatatccttatacctattctcccatggtccagaaccagctacaatcaaatacacattggtgtactttgttataagccttgaaaatgct |
10841141 |
T |
|
| Q |
320 |
tcatgaagcaaaggatgacctttgtctttaactaatctccctgctacaccaagtactaaacttgcattgcttggaatcccaattttggttctaaatttcc |
419 |
Q |
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|||||||| || ||||||||||| || || |||||||| || ||||| |||| ||||||||| ||||| |||||||||||||||||||||||||| | |
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| T |
10841142 |
tcatgaagtaatggatgacctttatcctttactaatcttccagctactccaaatactaaactagcattacttggaatcccaattttggttctaaactctt |
10841241 |
T |
|
| Q |
420 |
ttcccaattcagcatcttctccaaactcatcctcatcaa |
458 |
Q |
| |
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|||| |||||||||||||||| ||| || ||||| |||| |
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| T |
10841242 |
ttcctaattcagcatcttctctaaaatcttcctcgtcaa |
10841280 |
T |
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