View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13386_low_25 (Length: 377)
Name: NF13386_low_25
Description: NF13386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13386_low_25 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 366
Target Start/End: Complemental strand, 34561043 - 34560697
Alignment:
| Q |
19 |
tttctggtatgtattcaaactagtcatttactaattgtgatttgcttcgctattatatttctaagatggttattgcagcaaattcatggggaaatcaggt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
34561043 |
tttctggtatgtattcaaactagtcatttactaattgtgatttgcgtcgctattatatttctaagatggttattgcagcgaattcatggg-aaatcaggt |
34560945 |
T |
|
| Q |
119 |
aaacctccggattcagggagcattaataattggaattccattaattgatgaagaaactcaccctttaagaactatgacaataaacattctttgaatgatt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34560944 |
aaacctccggattcagggagcattaataattggaattccattaattgacgaagaaactcaccctttaagaactatgacaataaacattctttgaatgatt |
34560845 |
T |
|
| Q |
219 |
ttcaacacattttagttgatatgaatgaaaatctcttctgcttaaattaaagaactacaaactcatttttctttgatgtagttctctttgatacctgatc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34560844 |
ttcaacacattttagttgatatgaatgaaaatctcttctgcttaaattaaagaactacaaactcatttttctttgatgtagttctctttgatacctgatc |
34560745 |
T |
|
| Q |
319 |
ttttcaactgcaaggttgcattgcattgcattatccctatatgatgat |
366 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34560744 |
ttttcaactgtaaggttgcattgcattgcattatccctatattatgat |
34560697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 286
Target Start/End: Complemental strand, 34549335 - 34549241
Alignment:
| Q |
191 |
tatgacaataaacattctttgaatgattttcaacacattttagttgatatgaatgaaaatctcttctgcttaaattaaagaactacaaactcattt |
286 |
Q |
| |
|
|||| |||||||||||||| ||| ||||| |||| |||| ||||||||| ||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
34549335 |
tatggcaataaacattcttaaaatccttttctccacactttaattgatatgagtgatt-tcttttctgcttaaattaaagaactacaaactcattt |
34549241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 345
Target Start/End: Complemental strand, 34549243 - 34549203
Alignment:
| Q |
305 |
tttgatacctgatcttttcaactgcaaggttgcattgcatt |
345 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
34549243 |
tttgatacctcatcttttcaactccaaggttgcattgcatt |
34549203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 261 - 345
Target Start/End: Complemental strand, 36085177 - 36085093
Alignment:
| Q |
261 |
taaattaaagaactacaaactcatttttctttgatgtagttctctttgatacctgatcttttcaactgcaaggttgcattgcatt |
345 |
Q |
| |
|
||||||| ||||||||||||| ||||| | ||| ||||| |||| ||||| ||||||||| | |||||||||||||||||||| |
|
|
| T |
36085177 |
taaattacagaactacaaactagtttttttgtgaaatagttatcttagatacgtgatcttttaatctgcaaggttgcattgcatt |
36085093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University