View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13386_low_28 (Length: 368)
Name: NF13386_low_28
Description: NF13386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13386_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 31054800 - 31055152
Alignment:
| Q |
1 |
tcatcaaatgacagaaccaactagttttctcatgacatcttaaatttgttgaaacagaaatcgtcgctaaaatggtttcatcctatttatttctaatcat |
100 |
Q |
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| T |
31054800 |
tcattaaatgacagaacgaactagttttctcatgacatcttaaatgtgttgaaacagaaatcgtcgctaaaatggtttcatcctatttatttctaatcaa |
31054899 |
T |
|
| Q |
101 |
ttagaagattatagaagttctgtttatcacattaatcaatcatttgatatggcatcatagcttaccattgatatatcagaagactagcatagtaaaaaac |
200 |
Q |
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| T |
31054900 |
ttagaagattatagaagttctgtttatcacattaatcaatcatatgatatggcatcatagcttaccattgatatatcagaagactagcatagtaaaaaac |
31054999 |
T |
|
| Q |
201 |
attatatcctttgtatctattactattgaactataatctataatacatgttaatttgtttcacttgcagatacctataaatggttctggtttgattgagt |
300 |
Q |
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| T |
31055000 |
attatatcctttgtatctattactattgaactataatctataatacatgttaatttgtttcacttgcagatacctataaatggttctggtttgattgagt |
31055099 |
T |
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| Q |
301 |
ataggtgtcacccctattggaaccaaaaatactgtccgtctcatgaacatgat |
353 |
Q |
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| T |
31055100 |
ataggtgtcacccctattggaaccaaaaatactgtccgtctcatgaacatgat |
31055152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 353
Target Start/End: Complemental strand, 34743589 - 34743498
Alignment:
| Q |
262 |
acttgcagatacctataaatggttctggtttgattgagtataggtgtcacccctattggaaccaaaaatactgtccgtctcatgaacatgat |
353 |
Q |
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| T |
34743589 |
actttcagattcctataaatgctgctggtttgattgagtatagatgccaccccttttggtcccaaaagtattgtccatctcatgaatatgat |
34743498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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