View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13386_low_3 (Length: 812)
Name: NF13386_low_3
Description: NF13386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13386_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 670; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 670; E-Value: 0
Query Start/End: Original strand, 14 - 809
Target Start/End: Original strand, 14760112 - 14760908
Alignment:
| Q |
14 |
atcaatagccggattagcagaacatattaccttcagtgatttagacttatcatatcttcccccagaaggattggcagcggcaagaatggaagtacgggca |
113 |
Q |
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| T |
14760112 |
atcaatagtcggattagcagaacatattaccttcagtgatttagacttatcatatcttcccccagaaggattggcagcggcaagaatggaagtacgggca |
14760211 |
T |
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| Q |
114 |
ttaagtgttgcttgtattcctgcttttgtgatactaatagtctgctgctccatggcttcatgaattgcaaccttcagtccaatcaaatatgagatacttt |
213 |
Q |
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| T |
14760212 |
ttaagtgttgcttgtattcctgcttttgtgatactgatagtctgctgctccatagcttcatgaattgcaaccttcagtgcaatcaaatatgagatacttt |
14760311 |
T |
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| Q |
214 |
ccggtccatgaccatgagttgcaactcaaagaaagatactcctcttacctgatctttggtgtccatcttatcaaattcatcgatgcagcaaatgccattg |
313 |
Q |
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| T |
14760312 |
tcggtccatgaccatgagttgcaactcaaagaaagatactcctcttacctgatctttggtgtccatcttatcaaattcatcgatgcaggaaatgccattg |
14760411 |
T |
|
| Q |
314 |
tcagaaagcatcaaagctccagtctgaaaacaaggtcttaaataagaaaacaccacactggtgaatatttaggcagttagataataaaagaagttcttat |
413 |
Q |
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| T |
14760412 |
tcagcaagcatcaaagctccagcctgaaaacaaggtcttaaataagaaaacaccacactggtgaatatttaggcagttagataataaaagaagttcttat |
14760511 |
T |
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| Q |
414 |
ataacgcctgaacatattaatacccactccttttgaattc-nnnnnnnccatattcagtcaatatcgctaagtcatgtaccataaacaatttttatgcta |
512 |
Q |
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| T |
14760512 |
ataacgcctgaacatattaatacccactccttttgaattctttttttcccctattcaggcaatatctctaagtcatgtaccataaacaatttttatgcta |
14760611 |
T |
|
| Q |
513 |
ctctctatactggttgctagatgtaaaatcctaattacaacatgcaaacattttggcatgattgttatagttcaaaaatccaagatgagcagacaaactt |
612 |
Q |
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| T |
14760612 |
--ctctatactggttggtagatgtaaaatcctaattacaacatgcaaacattttggcatgattattatagttcaaaaatccaagatgagcagacaaactt |
14760709 |
T |
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| Q |
613 |
acgatatgaagcctactagtactacattgaagagaagccagaggattctaatacctgctttaacttaattcttctgaaatgtgtatataacatttctta- |
711 |
Q |
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| T |
14760710 |
acgatatgaagcctactagtactacattgaagagaagccagaggattctaatacctgctttaacttaattcttctgaaatgtgtatataacatttcttat |
14760809 |
T |
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| Q |
712 |
ttttttgattca-nnnnnnnccatggagtaatttcaacctaaaaagttctaatcctgttattatgttttatcaagtaattgagatgaacagttgtatta |
809 |
Q |
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| T |
14760810 |
ttttttgattcattttttttccatggagtaatttcaacctaaaaagttctaatcctgttattatgttttatcaagtaattgagatgaacagttgtatta |
14760908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 168; Significance: 1e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 38 - 365
Target Start/End: Original strand, 37646999 - 37647325
Alignment:
| Q |
38 |
tattaccttcagtgatttagacttatcatatcttcccccagaaggattggcagcggcaagaatggaagtacgggcattaagtgttgcttgtattcctgct |
137 |
Q |
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| T |
37646999 |
tattaccttcagtggtttagacttatcgtaccgtcctccagcagggttggcagcggcaagaatggaagtacgagcattcagtgttgcttgtattcctgct |
37647098 |
T |
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| Q |
138 |
tttgtgatactaatagtctgctgctccatggcttcatgaattgcaaccttcagtccaatcaaatatgagatactttccggtccatgaccatgagttgcaa |
237 |
Q |
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| T |
37647099 |
tttgtgatactaatagtttgttgttccatagcctcatgaattgcaaccttcaatccaatcaaatatgagatactttccagtccatgaccctcaaatgcca |
37647198 |
T |
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| Q |
238 |
ctcaaagaaagatactcctcttacctgatctttggtgtccatcttatcaaattcatcgatgcagcaaatgccattgtcagaaagcatcaaagctccagtc |
337 |
Q |
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| T |
37647199 |
gt-aaaaaaatgcatgcctcttacctgatctcttatgtccatcttgtcaaattcatcgatgcagcaaatgccattgtcagcaagcatcaaagcgccggcc |
37647297 |
T |
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| Q |
338 |
tgaaaacaaggtcttaaataagaaaaca |
365 |
Q |
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| T |
37647298 |
tgaaaacaagctcttacataagaaaaca |
37647325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 735 - 802
Target Start/End: Original strand, 37647638 - 37647706
Alignment:
| Q |
735 |
ggagtaatttcaacctaaaa-agttctaatcctgttattatgttttatcaagtaattgagatgaacagt |
802 |
Q |
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||||||||||||||||||| || ||||||||| ||||| ||||||||||| ||||| |||||||||| |
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| T |
37647638 |
ggagtaatttcaacctaaagcagatctaatcctattattgtgttttatcaaataattatgatgaacagt |
37647706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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