View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13386_low_33 (Length: 321)
Name: NF13386_low_33
Description: NF13386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13386_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 24 - 307
Target Start/End: Complemental strand, 6505048 - 6504765
Alignment:
| Q |
24 |
agtgggagttgtgtggaataacaaaagagatagtggactttggtttgctccagctgaatggagagaagctaggacaggaattcagcttataccattggct |
123 |
Q |
| |
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|||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6505048 |
agtgggagttttgtggaataataaaagagatagtggactttggtttgctccacctgaatggagagaagctaggacaggaattcagcttataccattggct |
6504949 |
T |
|
| Q |
124 |
cctatttctgaagatttgttttctgatgttgattatgttaaagatcttgttgagtggacattgcctgctttgaatagggaaggtggtgttggagaaggat |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6504948 |
cctatttctgaagatttgttttctgatgttgattatgttaaagatcttgttgagtggacattgcctgctttgaatagggaaggtggtgttggagaaggat |
6504849 |
T |
|
| Q |
224 |
ggaagggattcttatattcattggaaggaatttatgataatgaaagtgcattgaagaagataagaagcttgaatggttttgatg |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6504848 |
ggaagggattcttatattcattggaaggaatttatgataatgaaagtgcattgaagaagataagaagcttgaatggttttgatg |
6504765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 42 - 310
Target Start/End: Complemental strand, 6464883 - 6464618
Alignment:
| Q |
42 |
taacaaaagagatagtggactttggtttgctccagctgaatggagagaagctaggacaggaattcagcttataccattggctcctatttctgaagatttg |
141 |
Q |
| |
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|||||| ||||| |||||| | ||||||||||| ||||||||| |||| |||| || |||||||| |||||||| ||| ||||||||| || |
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| T |
6464883 |
taacaagagagacagtggattatggtttgctcctcctgaatggaaagaatgtaggcttgggattcagctcttaccattgcttccaatttctgaattctta |
6464784 |
T |
|
| Q |
142 |
ttttctgatgttgattatgttaaagatcttgttgagtggacattgcctgctttgaatagggaaggtggtgttggagaaggatggaagggattcttatatt |
241 |
Q |
| |
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||||| ||||||||| ||| || || ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| || || | ||| |
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| T |
6464783 |
ttttcaaatgttgattttgtgaaggaacttgtggagtggacattgcctgctttgaatagggaaggtg---ttggagaaggatggaaagggtttgtctatg |
6464687 |
T |
|
| Q |
242 |
cattggaaggaatttatgataatgaaagtgcattgaagaagataagaagcttgaatggttttgatgatg |
310 |
Q |
| |
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| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6464686 |
ccttggaaggagtttatgataatgaaagtggattgaagaagataagaagcttgaatggttttgatgatg |
6464618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 42 - 310
Target Start/End: Original strand, 6473671 - 6473936
Alignment:
| Q |
42 |
taacaaaagagatagtggactttggtttgctccagctgaatggagagaagctaggacaggaattcagcttataccattggctcctatttctgaagatttg |
141 |
Q |
| |
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|||||| ||||| |||||| | ||||||||||| |||| ||||| |||| |||| ||||||||||| |||||||| |||||||||||||| |||| |
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|
| T |
6473671 |
taacaagagagacagtggattatggtttgctccggctgcatggaaagaatgtaggcttggaattcagctcctaccattgattcctatttctgaagttttg |
6473770 |
T |
|
| Q |
142 |
ttttctgatgttgattatgttaaagatcttgttgagtggacattgcctgctttgaatagggaaggtggtgttggagaaggatggaagggattcttatatt |
241 |
Q |
| |
|
||||| |||||||||||||| || || ||||| ||||||||||||| |||||| ||||||||| ||||||| |||||||||||| || || | ||| |
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| T |
6473771 |
ttttcagatgttgattatgtgaaggaacttgtggagtggacattgcttgctttaaatagggaa---ggtgttgaagaaggatggaaaggttttgtctatg |
6473867 |
T |
|
| Q |
242 |
cattggaaggaatttatgataatgaaagtgcattgaagaagataagaagcttgaatggttttgatgatg |
310 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||| |||| ||| |||||| | |||||||||| |
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| T |
6473868 |
cattgcaaggaatttatgataatgaaagtggattgaagaatataaaaagtttgaatagatttgatgatg |
6473936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 42 - 310
Target Start/End: Original strand, 6462449 - 6462714
Alignment:
| Q |
42 |
taacaaaagagatagtggactttggtttgctccagctgaatggagagaagctaggacaggaattcagcttataccattggctcctatttctgaagatttg |
141 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||| |||||| |||||| ||| ||||||||||| ||||||||| |||||||||||||| ||| |
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|
| T |
6462449 |
taacaagagagaaagtggactttggtttgctccacctgaatatagagaatgtagacttggaattcagctcttaccattggttcctatttctgaagtattg |
6462548 |
T |
|
| Q |
142 |
ttttctgatgttgattatgttaaagatcttgttgagtggacattgcctgctttgaatagggaaggtggtgttggagaaggatggaagggattcttatatt |
241 |
Q |
| |
|
|| ||||||||||| ||||| || | |||||||| |||||||||||||||||||| || || |||||||| |||||||||||| || || ||||| |
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|
| T |
6462549 |
ttctctgatgttgaatatgtgaagcaacttgttgaatggacattgcctgctttgaaaag---agatggtgttgaagaaggatggaaagggtttgtatatg |
6462645 |
T |
|
| Q |
242 |
cattggaaggaatttatgataatgaaagtgcattgaagaagataagaagcttgaatggttttgatgatg |
310 |
Q |
| |
|
| || |||||||||||||||| |||| |||||||||||| ||||||| || || || |||||||||| |
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|
| T |
6462646 |
ctttacaaggaatttatgataaggaaactgcattgaagaatataagaaatttaaaaggatttgatgatg |
6462714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 113 - 307
Target Start/End: Original strand, 6516812 - 6517003
Alignment:
| Q |
113 |
taccattggctcctatttctgaagatttgttttctgatgttgattatgttaaagatcttgttgagtggacattgcctgctttgaatagggaaggtggtgt |
212 |
Q |
| |
|
|||||||| ||| |||||||||| ||| |||||||||||||||||||| ||||| |||||||||||| |||||||| |||| || | | ||||| || |
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|
| T |
6516812 |
taccattgtgtccaatttctgaagttttattttctgatgttgattatgtgaaagaacttgttgagtgggcattgcctcctttcaaaacgttaggtgctga |
6516911 |
T |
|
| Q |
213 |
tggagaaggatggaagggattcttatattcattggaaggaatttatgataatgaaagtgcattgaagaagataagaagcttgaatggttttgatg |
307 |
Q |
| |
|
| | |||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6516912 |
---aaacagatggacgggatttcggtatgcattggaaggaatttatgataatgaaagtgcattgaagaagataagaagcttgaatggttttgatg |
6517003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 43 - 310
Target Start/End: Complemental strand, 6496222 - 6495958
Alignment:
| Q |
43 |
aacaaaagagatagtggactttggtttgctccagctgaatggagagaagctaggacaggaattcagcttataccattggctcctatttctgaagatttgt |
142 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||| | |||| | |||| |||| ||| ||||||| |||||||| |||||||||||||| |||| |
|
|
| T |
6496222 |
aacaagagagaaagtggactttggtttgctccaccggaatataaagaatgtagggttggagttcagctcttaccattgcttcctatttctgaagtattgt |
6496123 |
T |
|
| Q |
143 |
tttctgatgttgattatgttaaagatcttgttgagtggacattgcctgctttgaatagggaaggtggtgttggagaaggatggaagggattcttatattc |
242 |
Q |
| |
|
| |||||||| || ||||| || | |||||||| ||| |||||||||||||||| || || |||||||| |||||||||||| || || ||||| | |
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|
| T |
6496122 |
tctctgatgtcgaatatgtgaagcaacttgttgaatgggcattgcctgctttgaaaag---agatggtgttgaagaaggatggaaagggtttgtatatgc |
6496026 |
T |
|
| Q |
243 |
attggaaggaatttatgataatgaaagtgcattgaagaagataagaagcttgaatggttttgatgatg |
310 |
Q |
| |
|
|| |||||||||||||||| |||| |||||||||||| ||||||| || || || |||||||||| |
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|
| T |
6496025 |
cttacaaggaatttatgataaggaaaatgcattgaagaatataagaaatttaaaaggatttgatgatg |
6495958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 43 - 310
Target Start/End: Complemental strand, 6525920 - 6525656
Alignment:
| Q |
43 |
aacaaaagagatagtggactttggtttgctccagctgaatggagagaagctaggacaggaattcagcttataccattggctcctatttctgaagatttgt |
142 |
Q |
| |
|
||||||||||| ||||| | ||||||| |||||||||||||| |||| |||| || |||||||| |||||||| ||| |||||||||| |||| |
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|
| T |
6525920 |
aacaaaagagacagtggtttatggtttggtccagctgaatggaaagaatgtaggcttgggattcagctcttaccattgcttccaatttctgaagtcttgt |
6525821 |
T |
|
| Q |
143 |
tttctgatgttgattatgttaaagatcttgttgagtggacattgcctgctttgaatagggaaggtggtgttggagaaggatggaagggattcttatattc |
242 |
Q |
| |
|
| ||||||||| ||||| || | ||||| ||||||||||| |||||||| || ||||| |||||||| ||| || |||||||| || | ||| | |
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|
| T |
6525820 |
tctctgatgttatgtatgtgaagggacttgtggagtggacattacctgctttaaaaaggga---tggtgttgaagagggttggaaggggtttgtttatgc |
6525724 |
T |
|
| Q |
243 |
attggaaggaatttatgataatgaaagtgcattgaagaagataagaagcttgaatggttttgatgatg |
310 |
Q |
| |
|
||| |||| ||||||||||||||||||||| | |||||||||||| ||||| ||||||||||||| |
|
|
| T |
6525723 |
cttgcaagggatttatgataatgaaagtgcacagcagaagataagaaagttgaagggttttgatgatg |
6525656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 310
Target Start/End: Complemental strand, 6456826 - 6456658
Alignment:
| Q |
139 |
ttgttttctgatgttgattatgttaaagatcttgttgagtggacattgcctgctttgaatagggaaggtggtgttggagaaggatggaagggattcttat |
238 |
Q |
| |
|
|||||||| ||||||| |||||| || || ||||| || |||||||| ||| |||||||||| |||||| |||| ||||| ||||| || || ||| |
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|
| T |
6456826 |
ttgttttcggatgttggttatgtaaaggagcttgtggaatggacattacctaatttgaataggaaaggtg---ttggtgaagggtggaaaggttttatat |
6456730 |
T |
|
| Q |
239 |
attcattggaaggaatttatgataatgaaagtgcattgaagaagataagaagcttgaatggttttgatgatg |
310 |
Q |
| |
|
|| | ||||||| | ||||||||| ||||||| ||| | ||| ||||| | ||||| ||||||||||||| |
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|
| T |
6456729 |
atgctatggaaggtacttatgataaacaaagtgctttgcaaaaggtaagaggattgaagggttttgatgatg |
6456658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 289
Target Start/End: Original strand, 3754649 - 3754700
Alignment:
| Q |
238 |
tattcattggaaggaatttatgataatgaaagtgcattgaagaagataagaa |
289 |
Q |
| |
|
||||| ||| |||||||||||||||| |||| ||||||||||||||| |||| |
|
|
| T |
3754649 |
tattctttgcaaggaatttatgataaagaaaatgcattgaagaagattagaa |
3754700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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