View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13386_low_40 (Length: 257)

Name: NF13386_low_40
Description: NF13386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13386_low_40
NF13386_low_40
[»] chr2 (2 HSPs)
chr2 (1-242)||(42693589-42693830)
chr2 (64-120)||(42688092-42688148)
[»] chr3 (1 HSPs)
chr3 (63-120)||(36744660-36744717)
[»] chr8 (10 HSPs)
chr8 (55-135)||(6457559-6457639)
chr8 (55-125)||(6451370-6451440)
chr8 (64-120)||(6263797-6263853)
chr8 (63-120)||(6289527-6289584)
chr8 (63-120)||(6321909-6321966)
chr8 (63-120)||(6332483-6332540)
chr8 (61-118)||(6391482-6391539)
chr8 (63-119)||(6275040-6275096)
chr8 (63-119)||(6363675-6363731)
chr8 (63-119)||(6424566-6424622)
[»] chr5 (1 HSPs)
chr5 (67-119)||(9604084-9604136)
[»] chr7 (1 HSPs)
chr7 (64-119)||(46710884-46710939)


Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 42693589 - 42693830
Alignment:
Q  1 ttttggtttgagtagtttttattgaaaactcttgagcttacctgaaggcaacagatcacatttggatttactccagctagcatttctcttgcaaattctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42693589 ttttggtttgagtagtttttattgaaaactcttgagcttacctgaaggcaacagatcacatttggatttactccagctagcatttctcttgcaaattctt 42693688  T
Q  101 catcagtcatccatgcagacctgcttactgttcaattaataatatagaatagcgactgtcaaataagattaattcttgagatccaaaagcacttaacagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42693689 catcagtcatccatgcagacctgcttactgttcaattaataatatagaatagcgactgtcaaataagattaattcttgagatccaaaagcacttaacagg 42693788  T
Q  201 tccattttagttaaaagtacttttaaggtatgacaatgaaat 242  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  42693789 tccattttagctaaaagtacttttaaggtatgacaatgaaat 42693830  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 42688148 - 42688092
Alignment:
Q  64 ggatttactccagctagcatttctcttgcaaattcttcatcagtcatccatgcagac 120  Q
    |||||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||    
T  42688148 ggatttacaccagcaagcatttctcttgcaaactcttcatctgtcatccatgcagac 42688092  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 36744717 - 36744660
Alignment:
Q  63 tggatttactccagctagcatttctcttgcaaattcttcatcagtcatccatgcagac 120  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36744717 tggatttacaccagcaagcatttctcttgcaaattcttcatcagtcatccatgcagac 36744660  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 135
Target Start/End: Original strand, 6457559 - 6457639
Alignment:
Q  55 atcacatttggatttactccagctagcatttctcttgcaaattcttcatcagtcatccatgcagacctgcttactgttcaa 135  Q
    |||||||| |||||||| ||||| | ||| |||||| ||||||||||||| ||||||||||||||| |||| |||| ||||    
T  6457559 atcacattaggatttacaccagcaaccatctctcttccaaattcttcatctgtcatccatgcagacttgctaactgctcaa 6457639  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 125
Target Start/End: Original strand, 6451370 - 6451440
Alignment:
Q  55 atcacatttggatttactccagctagcatttctcttgcaaattcttcatcagtcatccatgcagacctgct 125  Q
    |||||||| |||||||| ||||| ||||| |||||| ||||||||||||||||  ||||||||||| ||||    
T  6451370 atcacattaggatttacaccagcaagcatctctcttccaaattcttcatcagtattccatgcagacttgct 6451440  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 6263797 - 6263853
Alignment:
Q  64 ggatttactccagctagcatttctcttgcaaattcttcatcagtcatccatgcagac 120  Q
    |||||||| ||||| || || |||||| ||||||| |||||||||||||||||||||    
T  6263797 ggatttacaccagcaagaatctctcttccaaattcatcatcagtcatccatgcagac 6263853  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 6289527 - 6289584
Alignment:
Q  63 tggatttactccagctagcatttctcttgcaaattcttcatcagtcatccatgcagac 120  Q
    |||||| || ||||| | ||| ||||||| |||||||||||||||||||||| |||||    
T  6289527 tggattcacaccagcaatcatctctcttgtaaattcttcatcagtcatccatccagac 6289584  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 6321909 - 6321966
Alignment:
Q  63 tggatttactccagctagcatttctcttgcaaattcttcatcagtcatccatgcagac 120  Q
    |||||| || ||||| | ||| || |||||||||||||||||||||||||| ||||||    
T  6321909 tggattcacaccagcaatcatctcccttgcaaattcttcatcagtcatccacgcagac 6321966  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 6332483 - 6332540
Alignment:
Q  63 tggatttactccagctagcatttctcttgcaaattcttcatcagtcatccatgcagac 120  Q
    |||||| || ||||| | ||| || |||||||||||| ||||||||||||||||||||    
T  6332483 tggattcacaccagcaatcatctcccttgcaaattctccatcagtcatccatgcagac 6332540  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 6391482 - 6391539
Alignment:
Q  61 tttggatttactccagctagcatttctcttgcaaattcttcatcagtcatccatgcag 118  Q
    |||||||| || ||||| | ||| || ||||||||||| |||||||||||||||||||    
T  6391482 tttggattcacaccagcaatcatctcccttgcaaattcctcatcagtcatccatgcag 6391539  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 6275040 - 6275096
Alignment:
Q  63 tggatttactccagctagcatttctcttgcaaattcttcatcagtcatccatgcaga 119  Q
    ||||||||| ||||| | ||| ||||||| ||||||||| |||||||||||| ||||    
T  6275040 tggatttacaccagcaatcatctctcttgtaaattcttcgtcagtcatccatccaga 6275096  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 6363675 - 6363731
Alignment:
Q  63 tggatttactccagctagcatttctcttgcaaattcttcatcagtcatccatgcaga 119  Q
    |||||| || ||||| | ||| || ||||||||||| ||||||||||||||||||||    
T  6363675 tggattcaccccagcaatcatctcccttgcaaattcctcatcagtcatccatgcaga 6363731  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 6424566 - 6424622
Alignment:
Q  63 tggatttactccagctagcatttctcttgcaaattcttcatcagtcatccatgcaga 119  Q
    |||||| |||||||| | ||| || ||||||||||| |||||||||||||| |||||    
T  6424566 tggattcactccagcaatcatctcccttgcaaattcctcatcagtcatccacgcaga 6424622  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 9604136 - 9604084
Alignment:
Q  67 tttactccagctagcatttctcttgcaaattcttcatcagtcatccatgcaga 119  Q
    ||||||||||| | ||| |||||| ||||||||||||||||||||||||||||    
T  9604136 tttactccagcaaccatctctcttccaaattcttcatcagtcatccatgcaga 9604084  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 46710884 - 46710939
Alignment:
Q  64 ggatttactccagctagcatttctcttgcaaattcttcatcagtcatccatgcaga 119  Q
    |||||||| ||||| ||||||||||| |||||||||||||||||  ||||||||||    
T  46710884 ggatttacaccagccagcatttctctagcaaattcttcatcagttctccatgcaga 46710939  T

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