View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13386_low_42 (Length: 229)
Name: NF13386_low_42
Description: NF13386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13386_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 4211317 - 4211510
Alignment:
| Q |
20 |
aacttccacgtgttgtttatgagtttcatgagtgaaaacgttgttactgttgtcgggtgagagctttgtagtgaagggttgtgtaggtaagtaactataa |
119 |
Q |
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| T |
4211317 |
aacttccacgtgttgtttatgagtttcatgagtgaaaacgttgttactgttgtcgggtgagagctttgtagtgaagggttgtgtaggtaagtaactataa |
4211416 |
T |
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| Q |
120 |
aggttaatggatttgagtctttgtaaaacagaaggagatctagcaagttgaggaacatggatttcattttcgtacgtttgaagttgttgatatt |
213 |
Q |
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| T |
4211417 |
aggttaatggatttgagtctttgtaaaacagaaggagatctagcaagttgaggaacatggatttcattttcgtacgtttgaagttgttgatatt |
4211510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 4211552 - 4211596
Alignment:
| Q |
117 |
taaaggttaatggatttgagtctttgtaaaacagaaggagatcta |
161 |
Q |
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| T |
4211552 |
taaaagttgatggatttgagtctttgtaaaacagaaggagatcta |
4211596 |
T |
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