View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13386_low_43 (Length: 229)
Name: NF13386_low_43
Description: NF13386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13386_low_43 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 15 - 215
Target Start/End: Original strand, 9239590 - 9239788
Alignment:
| Q |
15 |
atcagaggtcaccactagcagacgaagaaaaacaaacagcccccaaaacaaaataacccacaagctcctcctcctcatcaccatattaaaaaactgacca |
114 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
9239590 |
atcagaggtcaccacgagcagacgaagaaaaacaaacagcccccaaaacaaaataacccacaagctcctcctcctcaacaccataataaaaaactgacca |
9239689 |
T |
|
| Q |
115 |
tcacaaacaaacnnnnnnnnncatgttaacattccaacgccctaactcaacgccaacaatcaccactttatgttaccaacacacacaacgacccacatca |
214 |
Q |
| |
|
||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9239690 |
tcacaaaaaaa--aaaacacacacgttaacattccaacgccctaactcaacgccaacaatcaccactttatgttaccaacacacacaaccacccacatca |
9239787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University