View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13386_low_5 (Length: 783)
Name: NF13386_low_5
Description: NF13386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13386_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 720; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 720; E-Value: 0
Query Start/End: Original strand, 18 - 776
Target Start/End: Original strand, 36870823 - 36871582
Alignment:
| Q |
18 |
ccggctactctagtatttggctgagacatattttgactgtagtcctgtttcgccagcccgaaatctgcaacccttgctctcatacctgcatcaagtagta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36870823 |
ccggctactctagtatttggctgagacatattttgactgtagtcctgtttcgccagcccgaaatctgcaacccttgctctcatacctgcatcaagtagta |
36870922 |
T |
|
| Q |
118 |
tattggtagctttgatatctctgtgataaacaggaggcttaactccaaagtgcaaataaaccaacgcgttcgccacatccaagattatgtttttcctttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36870923 |
tattggtagctttgatatctctgtgataaacaggaggcttaactccaaagtgcaaataaaccaacgcgttcgccacatccaagattatgttttttctttg |
36871022 |
T |
|
| Q |
218 |
agaccaagtcaaagattgtttttcatttt-ggttatccatttcagggaaaagatggtctttaagactaccattcggcatataatcatagacaagatactt |
316 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36871023 |
agaccaagtcaaagattgtttttcatttttggttatccatttcagggaaaagatggtctttaagactaccattcggcatataatcatagacaagatactt |
36871122 |
T |
|
| Q |
317 |
tccaatgtactcaggattctcatcttcaccaacaacacaacatcctcttagcggcaccaaattgcgatgtttcaagctactaacaatccccacctctctg |
416 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36871123 |
tccaaagtactcaggattctcatcttcaccaacaacacaacatcctcttagcggcaccaaattgcgatgtttcaagctactaacaatccccacctctctg |
36871222 |
T |
|
| Q |
417 |
taaaactcaacatctccttgataatcagattcttcaatccttttaaccgcaacaatcgtctcatccggtaaaacccccttgtaaaccgaaccagacccgc |
516 |
Q |
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| T |
36871223 |
taaaactcaacatctccttgataatcagattcttcaatccttttaaccgcaacaatcgtctcatccggtaaaacccccttgtaaaccgaaccagacccgc |
36871322 |
T |
|
| Q |
517 |
ctcttccaatgaaattttgggccgaaaagttgtcagtaaccttcacaagatccttaaaattaaaccaaatcaacccacttttaggcctaactcttaaact |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36871323 |
ctcttccaatgaaattttgggccgaaaagttgtcagtaaccttcacaagatccttaaaattaaaccaaatcaacccacttttaggcctaactcttaaact |
36871422 |
T |
|
| Q |
617 |
aaaactaggctcttgtgaaccaccattatgtggtaacaaattttcattgnnnnnnnncttcacccaccaaacataccaaaaatacaataaccctaacaaa |
716 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36871423 |
aaaactaggctcttgtgaaccaccattatgtggtaacaaattttcattgttttttttcttcacccaccaaacataccaaaaatacaataaccctaacaaa |
36871522 |
T |
|
| Q |
717 |
aatgacacaaatactaatgaagctacaaccaatccaataacaagagcacgatgatgatgt |
776 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36871523 |
aatgacacaaatactaatgaagctacaaccaatccaataacaagagcacgatgatgatgt |
36871582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 69 - 502
Target Start/End: Original strand, 36877461 - 36877894
Alignment:
| Q |
69 |
gccagcccgaaatctgcaacccttgctctcatacctgcatcaagtagtatattggtagctttgatatctctgtgataaacaggaggcttaactccaaagt |
168 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||| || ||| ||||||||||||| |
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| T |
36877461 |
gccagcccgaaatctgcaacccttgctctcatatctgcaccaagtagtatattggtggctttgatatctctgtgataaatagcaggtttaactccaaagt |
36877560 |
T |
|
| Q |
169 |
gcaaataaaccaacgcgttcgccacatccaagattatgtttttcctttgagaccaagtcaaagattgtttttcattttggttatccatttcagggaaaag |
268 |
Q |
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| T |
36877561 |
gcaaataaaccaacccacttgccacatccaagattatgttttttctttgaggccaagtcaacaatttctgttcattttcgttgtccaatgatggaaagat |
36877660 |
T |
|
| Q |
269 |
atggtctttaagactaccattcggcatataatcatagacaagatactttccaatgtactcaggattctcatcttcaccaacaacacaacatcctcttagc |
368 |
Q |
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||| |||| ||| ||||||| |||||||||||||| ||||||||| | ||| ||| |||| | ||| ||| |||| |||||||| ||||||| |
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| T |
36877661 |
atgatcttcaaggttaccatttggcatataatcataaacaagatacctatttttgtgctcttgattatgatcgtcatcaaccacacaacaccctcttaat |
36877760 |
T |
|
| Q |
369 |
ggcaccaaattgcgatgtttcaagctactaacaatccccacctctctgtaaaactcaacatctccttgataatcagattcttcaatccttttaaccgcaa |
468 |
Q |
| |
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||||| | |||||| ||||||||| | | || |||| |||| || | || |||||| |||| |||||| ||||||||||||| || | |||||| |||| |
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| T |
36877761 |
ggcactagattgcggtgtttcaagttgccaataatctccacttcggtatagaactcatcatccccttgaaaatcagattcttccatgcatttaacagcaa |
36877860 |
T |
|
| Q |
469 |
caatcgtctcatccggtaaaacccccttgtaaac |
502 |
Q |
| |
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|| | || ||||| |||| || ||||||||||| |
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| T |
36877861 |
cagttgtgtcatcaggtagaatgcccttgtaaac |
36877894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 1e-31; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 63 - 213
Target Start/End: Complemental strand, 718519 - 718369
Alignment:
| Q |
63 |
tgtttcgccagcccgaaatctgcaacccttgctctcatacctgcatcaagtagtatattggtagctttgatatctctgtgataaacaggaggcttaactc |
162 |
Q |
| |
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|||||||| || || ||||| ||||| ||||| |||||| || ||||||||||||||||||||||||||||||| || ||||||| | ||||||||||| |
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| T |
718519 |
tgtttcgcaagaccaaaatcagcaactcttgccctcatatcttcatcaagtagtatattggtagctttgatatccctatgataaattgcaggcttaactc |
718420 |
T |
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| Q |
163 |
caaagtgcaaataaaccaacgcgttcgccacatccaagattatgtttttcc |
213 |
Q |
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|| |||| |||||| ||||| | || |||||||||||||||||||||||| |
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| T |
718419 |
catagtgtaaataagccaacccttttcccacatccaagattatgtttttcc |
718369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 11845354 - 11845313
Alignment:
| Q |
106 |
catcaagtagtatattggtagctttgatatctctgtgataaa |
147 |
Q |
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|||||||||||||||| |||| |||||||||||| ||||||| |
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| T |
11845354 |
catcaagtagtatatttgtagatttgatatctctatgataaa |
11845313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 11850083 - 11850042
Alignment:
| Q |
106 |
catcaagtagtatattggtagctttgatatctctgtgataaa |
147 |
Q |
| |
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|||||||||||||||| |||| |||||||||||| ||||||| |
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| T |
11850083 |
catcaagtagtatatttgtagatttgatatctctatgataaa |
11850042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 40598090 - 40598049
Alignment:
| Q |
106 |
catcaagtagtatattggtagctttgatatctctgtgataaa |
147 |
Q |
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|||||||||||||||| |||| |||||||||||| ||||||| |
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| T |
40598090 |
catcaagtagtatatttgtagatttgatatctctatgataaa |
40598049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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