View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13386_low_7 (Length: 704)
Name: NF13386_low_7
Description: NF13386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13386_low_7 |
 | |
|
| [»] scaffold1157 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 635; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 9 - 687
Target Start/End: Complemental strand, 16527054 - 16526376
Alignment:
| Q |
9 |
caagaaaattatgtctgtaagttcatctcttgaaatggattcaattaaccaaaattcattttaactaatcgagaaaaggttctttgtattacaaatttaa |
108 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16527054 |
caagaatattatgtctgtaagttcatctctttaaatggattcaattaagcaaaattcattttaactaatcgagaaaaggttctttgtattacaaatttaa |
16526955 |
T |
|
| Q |
109 |
ctgattgtattgtttttatggacttacttaggtcacgattacaacaggtttattcctaatacaaaaccgagtagtggtaagtgtagtcattgttatcttt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16526954 |
ctgattgtattgtttttatggacttacttaggtcacgattacaacaggtttattcctaatacaaaaccgagtagtggtaagtgtagtcattgttatcttt |
16526855 |
T |
|
| Q |
209 |
tatctgttcactcacaaagtttgatattagtttttgatgtaattgtcacatattgatttggaaaacaggaacaacaccaaagaggggcagctaatggcct |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16526854 |
tatctgttcactcacaaagtttgatattagtttttgatgtaattgtgacatattgatttggaaaacaggaacaacaccaaagaggggcagctaatggcct |
16526755 |
T |
|
| Q |
309 |
ttctatgacagggatgtctctattcaaagccattggacctgctgcaggcggtacaatgtgagtagtctttctctaaatcttcattagcagaaattttaat |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16526754 |
ttctatgacagggatgtctctattcaaagccattggacctgctgcaggcggtacaatgtgagtagtctttctctaattcttcattagcagaaattttaat |
16526655 |
T |
|
| Q |
409 |
ctacatgcttttttactacaccttagatatactattaaaaatcattctgaattttcttctttttatgatctttgattttgcagattaacttggtcacaaa |
508 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16526654 |
ctacatgcttttttactacacttaagatatactattaaaaatcattcagaattttcttctttttatgatctttgtttttgcagattaacttggtcacaaa |
16526555 |
T |
|
| Q |
509 |
agcgtatggatgcttctttcctaccgggtatgatgctcagctataaaaagtcaacatttctctagtttatatgtcatttttatgttcttttcacattata |
608 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16526554 |
agcgtatggatgcttctttcctaccgggtatgatgctcagctataaacagtcaacatttatctagtttatatgtcatttttatgttcttttcacattata |
16526455 |
T |
|
| Q |
609 |
gctaagaacatgtggttcttttgctagatgtatttcttggggactaactattgctcatttaactgcaggcactcaaatg |
687 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16526454 |
gctaagaacatgtggttcttttgctagatgtatttcttggggactaactattgctcatttaactgcaggcactcaaatg |
16526376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 9 - 438
Target Start/End: Complemental strand, 16568646 - 16568210
Alignment:
| Q |
9 |
caagaaaattatgtctgtaagttcatctcttgaaatggattcaattaaccaaaattcattttaactaatcgaga-aaaggttctttgtattacaaattta |
107 |
Q |
| |
|
|||||| ||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||| ||||||| | ||| |||| |||||||||||||||| |
|
|
| T |
16568646 |
caagaatattatgtctgtaagttcatttctttaaatggattcacttaaccaaaattcattttaattaatcgatagaaacgttcgttgtattacaaattta |
16568547 |
T |
|
| Q |
108 |
actgattgtattgt-ttttatggacttacttaggtcacgattacaacaggtttattcctaatacaaaaccgagtagtggtaagtgtagtcattgttatct |
206 |
Q |
| |
|
|||||||||| | ||||||||| || |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16568546 |
actgattgtaataacttttatggagttgcttaggagacgattcaaacaggtttattcctaatacaaaaccgagtagtggtaagtgtagtcattgttatct |
16568447 |
T |
|
| Q |
207 |
tttatctgttcactcacaaagtttgatattagtttttgatgtaattgtcacatattgatttggaaaacaggaacaacaccaaagaggggcagctaatggc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
16568446 |
tttatctgttcactcacaaagtttgatattagtttttgatgtaattgtgacatattgatttggaaaacaggaacaacatcaaagaggagcagctaatgga |
16568347 |
T |
|
| Q |
307 |
ctttctatgacagggatgtctctattcaaagccattggacctgctgcaggcggtacaatgtgagtagtctttctctaa-----atcttcattagcagaaa |
401 |
Q |
| |
|
|| |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||| ||||| |||||||||| ||||| |
|
|
| T |
16568346 |
attgctatgacatcaatgtctctattcaaagctattggacctgctgcaggtggtacaatgtgagtaatcttcatctaatttttttcttcattagtagaaa |
16568247 |
T |
|
| Q |
402 |
ttttaatctacatgcttttttactacaccttagatat |
438 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||| |
|
|
| T |
16568246 |
ttttaatctacatgcttttttactacacttaagatat |
16568210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 220 - 463
Target Start/End: Complemental strand, 16518303 - 16518056
Alignment:
| Q |
220 |
tcacaaagtttgatattagtttttgatgtaattgtcacatattgatttggaaaacaggaacaacaccaaagaggggcagctaatggcctttctatgacag |
319 |
Q |
| |
|
|||||||||||| ||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
16518303 |
tcacaaagtttggtattagtttttgatggatttgtggcatattgatttggaaaacaggaacaacaccaaagaggggctgctaatggcatttctatgacag |
16518204 |
T |
|
| Q |
320 |
ggatgtctctattcaaagccattggacctgctgcaggcggtacaatgtgagtagtctttctctaa----atcttcattagcagaaattttaatctacatg |
415 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
16518203 |
ctatgtctctattcaaagcgattggacctgctgcaggtggtacaatgtgagtagtcttcatctaattttttcttcattagtagaaattttaatctacatg |
16518104 |
T |
|
| Q |
416 |
cttttttactacaccttagatatactattaaaaatcattctgaatttt |
463 |
Q |
| |
|
|||||||||||||| | |||||| |||||| |||| ||||| |||||| |
|
|
| T |
16518103 |
cttttttactacacttaagatatgctattataaatgattctcaatttt |
16518056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 232 - 384
Target Start/End: Complemental strand, 16587134 - 16586984
Alignment:
| Q |
232 |
atattagtttttgatgtaattgtcacatattgatttggaaaacaggaacaacaccaaagaggggcagctaatggcctttctatgacagggatgtctctat |
331 |
Q |
| |
|
||||||||| |||||| || ||| |||| ||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||| |
|
|
| T |
16587134 |
atattagttgttgatggaagtgtgacat--tgatttgcaaaacaggaacaacaccaaagaggagcagctaatggaatttctatgacagctatgtctctat |
16587037 |
T |
|
| Q |
332 |
tcaaagccattggacctgctgcaggcggtacaatgtgagtagtctttctctaa |
384 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||| |||| |||||| |
|
|
| T |
16587036 |
tcaaagctattggacctgctgcaggtggtacaatgtgagtactcttcctctaa |
16586984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 33 - 186
Target Start/End: Complemental strand, 16587336 - 16587186
Alignment:
| Q |
33 |
atctcttgaaatggattcaattaaccaaaattcattttaactaatcgagaaaaggttctttgtattacaaatttaactgattgtattgttttt-atggac |
131 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||| |||| || |||||| ||||| ||||| |||||| ||| |||||||| ||||| |||| |
|
|
| T |
16587336 |
atctctttaaatggattcaattaaccaaaattcagtttaattaattgataaaaggctctttttattaaaaatttgactcattgtattatttttcatgg-- |
16587239 |
T |
|
| Q |
132 |
ttacttaggtcacgattacaacaggtttattcctaatacaaaaccgagtagtggt |
186 |
Q |
| |
|
|||||||| ||||||||||| || |||||||| ||||||||||||||||||| |
|
|
| T |
16587238 |
--acttaggtgacgattacaaccggattattccttgtacaaaaccgagtagtggt |
16587186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 443 - 555
Target Start/End: Complemental strand, 16586719 - 16586607
Alignment:
| Q |
443 |
ttaaaaatcattctgaattttcttctttttatgatctttgattttgcagattaacttggtcacaaaagcgtatggatgcttctttcctaccgggtatgat |
542 |
Q |
| |
|
|||||||| ||||| ||| ||||| || || ||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
16586719 |
ttaaaaataattctcaatgttctttttcttttgatctttgttaatacagattaacttggtcacaaaagcgtatggatgcttctttcctaccaggtttgat |
16586620 |
T |
|
| Q |
543 |
gctcagctataaa |
555 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
16586619 |
cctcaactataaa |
16586607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 487 - 530
Target Start/End: Complemental strand, 16518049 - 16518006
Alignment:
| Q |
487 |
tgcagattaacttggtcacaaaagcgtatggatgcttctttcct |
530 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16518049 |
tgcagattaacttggtcacaaaagcgtatggatgcttctttcct |
16518006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 199
Target Start/End: Complemental strand, 16518435 - 16518373
Alignment:
| Q |
137 |
taggtcacgattacaacaggtttattcctaatacaaaaccgagtagtggtaagtgtagtcatt |
199 |
Q |
| |
|
||||| || |||||||||||||||||||| ||||| ||||||| ||||||||||||| ||||| |
|
|
| T |
16518435 |
taggtgaccattacaacaggtttattccttatacagaaccgagcagtggtaagtgtattcatt |
16518373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 270 - 371
Target Start/End: Complemental strand, 26368031 - 26367930
Alignment:
| Q |
270 |
aaaacaggaacaacaccaaagaggggcagctaatggcctttctatgacagggatgtctctattcaaagccattggacctgctgcaggcggtacaatgtga |
369 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||| || ||||||| || ||||| |||||||| | ||||| || |||| ||| ||| || ||||| |
|
|
| T |
26368031 |
aaaataggaacaacatcaaagaggggcagctaatggcattgctatgactggaatgtcaatattcaaaacaattggtccagctggaggtggtgcagtgtga |
26367932 |
T |
|
| Q |
370 |
gt |
371 |
Q |
| |
|
|| |
|
|
| T |
26367931 |
gt |
26367930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1157 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: scaffold1157
Description:
Target: scaffold1157; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 9 - 555
Target Start/End: Original strand, 489 - 1042
Alignment:
| Q |
9 |
caagaaaattatgtctgtaagttcatctcttgaaatggattcaattaaccaaaattcattttaactaatcgaga-aaaggttctttgtattacaaattta |
107 |
Q |
| |
|
|||||| ||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||| ||||||| | ||| |||| |||||||||||||||| |
|
|
| T |
489 |
caagaatattatgtctgtaagttcatttctttaaatggattcacttaaccaaaattcattttaattaatcgatagaaacgttcgttgtattacaaattta |
588 |
T |
|
| Q |
108 |
actgattgtattgt-ttttatggacttacttaggtcacgattacaacaggtttattcctaatacaaaaccgagtagtggtaagtgtagtcattgttatct |
206 |
Q |
| |
|
|||||||||| | ||||||||| || |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
589 |
actgattgtaataacttttatggagttgcttaggagacgattcaaacaggtttattcctaatacaaaaccgagtagtggtaagtgtagtcattgttatct |
688 |
T |
|
| Q |
207 |
tttatctgttcactcacaaagtttgatattagtttttgatgtaattgtcacatattgatttggaaaacaggaacaacaccaaagaggggcagctaatggc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
689 |
tttatctgttcactcacaaagtttgatattagtttttgatgtaattgtgacatattgatttggaaaacaggaacaacatcaaagaggagcagctaatgga |
788 |
T |
|
| Q |
307 |
ctttctatgacagggatgtctctattcaaagccattggacctgctgcaggcggtacaatgtgagtagtctttctctaa-----atcttcattagcagaaa |
401 |
Q |
| |
|
|| |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||| ||||| |||||||||| ||||| |
|
|
| T |
789 |
attgctatgacatcaatgtctctattcaaagctattggacctgctgcaggtggtacaatgtgagtaatcttcatctaatttttttcttcattagtagaaa |
888 |
T |
|
| Q |
402 |
ttttaatctacatgcttttttactacaccttagatatactattaaaaatcattctgaattttcttctttttatgatctttgattttgcagattaacttgg |
501 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
889 |
ttttaatctacatgcttttttactacacttaagatatgctattaaaaatcattctgaattttcttctttttatgatctttgtttttgcagattaacttgg |
988 |
T |
|
| Q |
502 |
tcacaaaagcgtatggatgcttctttcctaccgggtatgatgctcagctataaa |
555 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| | ||||||| |
|
|
| T |
989 |
tcacaaaagcgtatggatgcttctttcctacctggtatgatgcttaactataaa |
1042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1157; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 651 - 687
Target Start/End: Original strand, 1243 - 1279
Alignment:
| Q |
651 |
actaactattgctcatttaactgcaggcactcaaatg |
687 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
1243 |
actaactattgcacatttaactgcaggaactcaaatg |
1279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 487 - 539
Target Start/End: Original strand, 2624241 - 2624293
Alignment:
| Q |
487 |
tgcagattaacttggtcacaaaagcgtatggatgcttctttcctaccgggtat |
539 |
Q |
| |
|
||||| |||||||||||||||||| | ||||||||||||||||| || ||||| |
|
|
| T |
2624241 |
tgcagcttaacttggtcacaaaagaggatggatgcttctttcctcccaggtat |
2624293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 273 - 306
Target Start/End: Original strand, 39163047 - 39163080
Alignment:
| Q |
273 |
acaggaacaacaccaaagaggggcagctaatggc |
306 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
|
|
| T |
39163047 |
acaggaacaacatcaaagaggggcagctaatggc |
39163080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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