View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13387_high_5 (Length: 324)
Name: NF13387_high_5
Description: NF13387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13387_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 308
Target Start/End: Original strand, 3857694 - 3857984
Alignment:
| Q |
18 |
gtatttggtttgacatgtttgatatctcagnnnnnnnncaattagattgaaaatataacaatttgggctaaggtctctttgaacaattttgtgtgcagtt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3857694 |
gtatttggtttgacatgtttgatatctcagttttttttcaattagattgaaaatataacaatttgggctaaggtctctttgaacaattttgtgtgcagtt |
3857793 |
T |
|
| Q |
118 |
gatggtatcactaccaatgaaattgactgctttacaaatgttgatatagttaatttagaccataaaaggtggatctctctacattcaaatgtagataagg |
217 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3857794 |
gatggtattactaccaatgaaattgactgctttacaaatgttgatatagttaatttagaccataaaaggtggatctctctgcattcaaatgtagataagg |
3857893 |
T |
|
| Q |
218 |
taaagtatattagcttatggtttttatatgatccaattcctactacccaacaaacatttgggactagtacaaagagcatttatttcttctc |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3857894 |
taaagtatattagcttatggtttttatatgatccaattcctactacccaacaaacatttgggactagtacaaagagcatgtatttcttctc |
3857984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 308
Target Start/End: Original strand, 3866451 - 3866741
Alignment:
| Q |
18 |
gtatttggtttgacatgtttgatatctcagnnnnnnnncaattagattgaaaatataacaatttgggctaaggtctctttgaacaattttgtgtgcagtt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3866451 |
gtatttggtttgacatgtttgatatctcagttttttttcaattagattgaaaatataacaatttgggctaaggtctctttgaacaattttgtgtgcagtt |
3866550 |
T |
|
| Q |
118 |
gatggtatcactaccaatgaaattgactgctttacaaatgttgatatagttaatttagaccataaaaggtggatctctctacattcaaatgtagataagg |
217 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3866551 |
gatggtattactaccaatgaaattgactgctttacaaatgttgatatagttaatttagaccataaaaggtggatctctctgcattcaaatgtagataagg |
3866650 |
T |
|
| Q |
218 |
taaagtatattagcttatggtttttatatgatccaattcctactacccaacaaacatttgggactagtacaaagagcatttatttcttctc |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3866651 |
taaagtatattagcttatggtttttatatgatccaattcctactacccaacaaacatttgggactagtacaaagagcatgtatttcttctc |
3866741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 5440237 - 5440182
Alignment:
| Q |
197 |
tacattcaaatgtagataaggtaaagtatattagcttatggtttttatatgatccaa |
253 |
Q |
| |
|
|||||||||| |||| |||||||| || |||||||||||| ||||||||||||||| |
|
|
| T |
5440237 |
tacattcaaacttagacaaggtaaattaaattagcttatgg-ttttatatgatccaa |
5440182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University