View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13387_high_7 (Length: 286)

Name: NF13387_high_7
Description: NF13387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13387_high_7
NF13387_high_7
[»] chr7 (2 HSPs)
chr7 (18-270)||(7109662-7109919)
chr7 (92-198)||(7110772-7110878)
[»] chr1 (4 HSPs)
chr1 (80-190)||(9987640-9987749)
chr1 (120-198)||(9986483-9986561)
chr1 (110-192)||(9992710-9992790)
chr1 (98-181)||(9991728-9991811)
[»] chr2 (2 HSPs)
chr2 (215-263)||(26169914-26169962)
chr2 (103-190)||(29873561-29873648)
[»] chr4 (1 HSPs)
chr4 (103-190)||(15841390-15841477)
[»] chr8 (1 HSPs)
chr8 (103-151)||(16524451-16524499)


Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 7109662 - 7109919
Alignment:
Q  18 aaaaagagcctctagtaggaagatggataagttgattagcctccttccaatcaacaaaatcaa-----ggatcatccatatttggttcaaagcaaccaca 112  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||    
T  7109662 aaaaagagcctttggtaggaagatggataagttgattagcctccttccaatcaacaaaatcaaccataggatcatccatatttggttcaaagcaaccaca 7109761  T
Q  113 catgtaagagagacatcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcatttataaactgttcgatctccannnnnnnaaattta 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||       |||| ||    
T  7109762 catgtaagagagacatcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcgtttataaactgttcaatctccatttttttaaatcta 7109861  T
Q  213 aagcctaactttaaatttgttcctttttgaggggtttttggcctaatcccctccctcc 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7109862 aagcctaactttaaatttgttcctttttgaggggtttttggcctaatcccctccctcc 7109919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 92 - 198
Target Start/End: Complemental strand, 7110878 - 7110772
Alignment:
Q  92 atttggttcaaagcaaccacacatgtaagagagacatcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcatttataaactgttcg 191  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| | ||||||||||| ||| |||||||| |||| |    
T  7110878 atttggttcgaagcaaccacacatgtaagagaaacatcacaatttaactcaaaatcttaatgtaatctatttataagtcgcctcgtttataaattgtttg 7110779  T
Q  192 atctcca 198  Q
    | |||||    
T  7110778 acctcca 7110772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 80 - 190
Target Start/End: Original strand, 9987640 - 9987749
Alignment:
Q  80 aggatcatccatatttggttcaaagcaaccacacatgtaagagagacatcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcattt 179  Q
    |||||| |||| ||||| |||||||||| ||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||| ||||||  |||    
T  9987640 aggatcgtccacatttgcttcaaagcaatcacacatgtaagagagacatcac-agttaacccaaaaccttaatgtaatgtgtttataactcgtcttgttt 9987738  T
Q  180 ataaactgttc 190  Q
    ||||| |||||    
T  9987739 ataaattgttc 9987749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 198
Target Start/End: Original strand, 9986483 - 9986561
Alignment:
Q  120 gagagacatcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcatttataaactgttcgatctcca 198  Q
    ||||||||||| |||||| | |||||| ||||||||||||||||||||||||  ||||||||||| |||| || |||||    
T  9986483 gagagacatcataatttatcccaaaactttaatgtaatgtgtttataagtcgcatcatttataaattgtttgacctcca 9986561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 192
Target Start/End: Original strand, 9992710 - 9992790
Alignment:
Q  110 acacatgtaagagagacatcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcatttataaactgttcga 192  Q
    |||||||||| |||||||||| | || |||| ||| |||||||||||||||||||||||||||||  |||||||| |||||||    
T  9992710 acacatgtaaaagagacatcatagtt-aacttaaa-ccttaatgtaatgtgtttataagtcgtcttgtttataaattgttcga 9992790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 181
Target Start/End: Original strand, 9991728 - 9991811
Alignment:
Q  98 ttcaaagcaaccacacatgtaagagagacatcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcatttat 181  Q
    ||||||||||||||||   |||| || ||||||||||||||| |||||| |||||||||| || ||| || ||||||| |||||    
T  9991728 ttcaaagcaaccacaccactaagggatacatcacaatttaacccaaaactttaatgtaatatgcttagaaatcgtctcgtttat 9991811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 26169962 - 26169914
Alignment:
Q  215 gcctaactttaaatttgttcctttttgaggggtttttggcctaatcccc 263  Q
    ||||||||| | |||||||||||||||||||| ||||||||||||||||    
T  26169962 gcctaacttcagatttgttcctttttgagggggttttggcctaatcccc 26169914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 190
Target Start/End: Original strand, 29873561 - 29873648
Alignment:
Q  103 agcaaccacacatgtaagagagacatcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcatttataaactgttc 190  Q
    |||||||||||| || |||||||| ||||| | | |||||||||||||| | |||| |||||| |||| || || ||||||| |||||    
T  29873561 agcaaccacacaagtgagagagacgtcacactcttactcaaaaccttaaggcaatgagtttatgagtcctcccacttataaaatgttc 29873648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 190
Target Start/End: Original strand, 15841390 - 15841477
Alignment:
Q  103 agcaaccacacatgtaagagagacatcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcatttataaactgttc 190  Q
    |||||||||||| || |||||||||||||| | | || ||||||||||| | ||||||||||| | || ||||| ||| ||| |||||    
T  15841390 agcaaccacacaagtgagagagacatcacactcttacccaaaaccttaaggcaatgtgtttatgaatcctctcacttacaaagtgttc 15841477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 16524499 - 16524451
Alignment:
Q  103 agcaaccacacatgtaagagagacatcacaatttaactcaaaaccttaa 151  Q
    |||||||||||| |||||||||||| |||| | | ||||||||||||||    
T  16524499 agcaaccacacaagtaagagagacaccacactcttactcaaaaccttaa 16524451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University