View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13387_low_11 (Length: 227)
Name: NF13387_low_11
Description: NF13387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13387_low_11 |
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| [»] chr5 (1 HSPs) |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 5924081 - 5924307
Alignment:
| Q |
1 |
tttgtttccaaatcgagcatgggctctgattatagtatcatcctcttcaggcgtaaaagcccgatgctcaacttgtggtgaaagctgattacaccaacgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5924081 |
tttgtttccaaatcgagcatgggctctgattatagtatcatcctcttcaggcgtaaaagcccgatgctcaacttgtggtgaaagctgattacaccaacgt |
5924180 |
T |
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| Q |
101 |
aacctgcatgatttcccagaccggcctggtatcgatttgcttataatcgaccagtttctcggcccgtgcttctctacaagcttttgaagtgcttcatctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5924181 |
aacctgcatgatttcccagaccggcctggtatcgatttgcttataatcgaccagtttctcggcccgtgcttctctacaagcttttgaagtgcttcatctt |
5924280 |
T |
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| Q |
201 |
cttctggactccatggacctttgatcc |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
5924281 |
cttctggactccatggacctttgatcc |
5924307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 5137958 - 5138184
Alignment:
| Q |
1 |
tttgtttccaaatcgagcatgggctctgattatagtatcatcctcttcaggcgtaaaagcccgatgctcaacttgtggtgaaagctgattacaccaacgt |
100 |
Q |
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|||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||| || |
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| T |
5137958 |
tttgtttccaaatcgagcgtgggctctgattatagcttcatcctcttcaggtgtaaaagccccacgctcaacttgtggtgaaagctgattacaccaaggt |
5138057 |
T |
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| Q |
101 |
aacctgcatgatttcccagaccggcctggtatcgatttgcttataatcgaccagtttctcggcccgtgcttctctacaagcttttgaagtgcttcatctt |
200 |
Q |
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| T |
5138058 |
aacctgcatgatttccctgaccggcctggtatcgatttgcttagaatcgaccagtttctcgcaccgtgcttttccacgagcttttgaagtgcttcatctt |
5138157 |
T |
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| Q |
201 |
cttctggactccatggacctttgatcc |
227 |
Q |
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| T |
5138158 |
cttctggactccacggaccttttatcc |
5138184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 76 - 227
Target Start/End: Complemental strand, 5179028 - 5178877
Alignment:
| Q |
76 |
tggtgaaagctgattacaccaacgtaacctgcatgatttcccagaccggcctggtatcgatttgcttataatcgaccagtttctcggcccgtgcttctct |
175 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||| ||||||||||| |
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| T |
5179028 |
tggtgaaagcagattacaccaacgtaacctgcatgatttccctgaccggcctggtatcgatttgcttagaatcgatcagtttctcgcaccgtgcttctcc |
5178929 |
T |
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| Q |
176 |
acaagcttttgaagtgcttcatcttcttctggactccatggacctttgatcc |
227 |
Q |
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|| |||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
5178928 |
acgagcttttgaagtgcttcatcttcttctgaactccatcgacctttgatcc |
5178877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 76 - 227
Target Start/End: Complemental strand, 5280842 - 5280691
Alignment:
| Q |
76 |
tggtgaaagctgattacaccaacgtaacctgcatgatttcccagaccggcctggtatcgatttgcttataatcgaccagtttctcggcccgtgcttctct |
175 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||| || |||||||| |
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| T |
5280842 |
tggtgaaagcagattacaccaacgtaaactgcatgatttccctgaccggcctggtatcgatttgcttagaatcgatgagtttctcgcaccatgcttctcc |
5280743 |
T |
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| Q |
176 |
acaagcttttgaagtgcttcatcttcttctggactccatggacctttgatcc |
227 |
Q |
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| T |
5280742 |
acgagcttttgaagtgcttcatcttcttctgaactccatcgacctttgatcc |
5280691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 39427358 - 39427277
Alignment:
| Q |
15 |
gagcatgggctctgattatagtatcatcctcttcaggcgtaaaagcccgatgctcaacttgtggtgaaagctgattacacca |
96 |
Q |
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|||||||||||||||| || | | ||| |||||||| | |||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
39427358 |
gagcatgggctctgataatgatgttatcttcttcaggagaaaaagcacgatgctcaacttgtggagaaagctgattacacca |
39427277 |
T |
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