View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13387_low_12 (Length: 222)

Name: NF13387_low_12
Description: NF13387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13387_low_12
NF13387_low_12
[»] chr8 (9 HSPs)
chr8 (22-209)||(2028350-2028537)
chr8 (22-209)||(1950456-1950646)
chr8 (24-205)||(10767529-10767710)
chr8 (25-161)||(2046366-2046505)
chr8 (46-161)||(2036989-2037104)
chr8 (22-149)||(2050187-2050314)
chr8 (22-130)||(2057169-2057277)
chr8 (68-149)||(2054193-2054274)
chr8 (25-110)||(2032985-2033073)
[»] chr4 (1 HSPs)
chr4 (22-93)||(48908717-48908788)
[»] chr2 (4 HSPs)
chr2 (25-119)||(28786134-28786228)
chr2 (65-113)||(28713345-28713393)
chr2 (65-110)||(28736619-28736664)
chr2 (65-110)||(28743245-28743290)


Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 22 - 209
Target Start/End: Complemental strand, 2028537 - 2028350
Alignment:
Q  22 aaatcttgtggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctggtgagctatacaaatcaaaattgcttttgtaaa 121  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2028537 aaatcttctggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctggtgagctatacaaatcaaaattgcttttgtaaa 2028438  T
Q  122 taaatgatccatgcatatctcttgtataaaactcctttttagcatctgtttccatctcatgaaacctcttcacaccatccttcatctc 209  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2028437 taaatgatccatgcaaatctcttgtataaaactcctttttagcatctgtctccatctcatgaaacctcttcacaccatccttcatctc 2028350  T

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Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 1950456 - 1950646
Alignment:
Q  22 aaatcttgtggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctggtgagctatacaaatcaaaattgcttttgtaaa 121  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1950456 aaatcttgtggtttgggagtatcaggagccaagtaacaagcacaagtatccctccaattgagtgctggtgagctatacaaatcaaaattgcttttgtaaa 1950555  T
Q  122 taaatgatccatgcatatctcttgtataaa---actcctttttagcatctgtttccatctcatgaaacctcttcacaccatccttcatctc 209  Q
    ||||||||  ||   ||||| |||| ||||   ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1950556 taaatgatttatttctatcttttgtgtaaaagtactcctttttagcatctgtatccatctcatgaaacctcttcacaccatccttcatctc 1950646  T

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Target: chr8; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 24 - 205
Target Start/End: Complemental strand, 10767710 - 10767529
Alignment:
Q  24 atcttgtggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctggtgagctatacaaatcaaaattgcttttgtaaata 123  Q
    ||||| ||||||||||||||||||||||||| |||| ||| |||||||||||||||| ||||||||||||||||| | |||||| || || |||||||||    
T  10767710 atcttctggtttgggagtatcaggagccaagtaacatgtaaaagtatccctccaattaagtgctggtgagctataaatatcaaagttactattgtaaata 10767611  T
Q  124 aatgatccatgcatatctcttgtataaaactcctttttagcatctgtttccatctcatgaaacctcttcacaccatccttca 205  Q
    || |||  |||  ||||||||||||| || || |||||  | ||||| |||  ||||| ||||||||| |||||||| ||||    
T  10767610 aaggatttatgtctatctcttgtatacaaatcttttttgacttctgtatcctgctcataaaacctcttaacaccatctttca 10767529  T

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Target: chr8; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 25 - 161
Target Start/End: Complemental strand, 2046505 - 2046366
Alignment:
Q  25 tcttgtggtttgggagtatcagg---agccaaggaacaagtacaagtatccctccaattgagtgctggtgagctatacaaatcaaaattgcttttgtaaa 121  Q
    |||| ||||||| ||||||||||   ||||||| |||||| | ||||||| ||||||||||||||||||| |||||| | |||| ||||||| |||||||    
T  2046505 tcttctggtttgagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaatatcataattgctattgtaaa 2046406  T
Q  122 taaatgatccatgcatatctcttgtataaaactccttttt 161  Q
    |||| |||| || |||||||||||||||||| || |||||    
T  2046405 taaaagatctattcatatctcttgtataaaaatctttttt 2046366  T

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Target: chr8; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 46 - 161
Target Start/End: Complemental strand, 2037104 - 2036989
Alignment:
Q  46 ggagccaaggaacaagtacaagtatccctccaattgagtgctggtgagctatacaaatcaaaattgcttttgtaaataaatgatccatgcatatctcttg 145  Q
    ||||||||| |||||| | ||||||| ||||||||||||||||||| |||||| | |||| ||||||| ||||||||||| |||| || |||||||||||    
T  2037104 ggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaatatcataattgctattgtaaataaaagatctattcatatctcttg 2037005  T
Q  146 tataaaactccttttt 161  Q
    ||||||| || |||||    
T  2037004 tataaaaatctttttt 2036989  T

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Target: chr8; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 22 - 149
Target Start/End: Complemental strand, 2050314 - 2050187
Alignment:
Q  22 aaatcttgtggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctggtgagctatacaaatcaaaattgcttttgtaaa 121  Q
    ||||||| ||||||||||||||||||||||||| |||| | | || ||||||||||||||||||| || |||||||| | ||||||||| || || ||||    
T  2050314 aaatcttctggtttgggagtatcaggagccaagtaacacgcaaaactatccctccaattgagtgccggagagctataaatatcaaaattactattataaa 2050215  T
Q  122 taaatgatccatgcatatctcttgtata 149  Q
     ||| |||| || |||||||||||||||    
T  2050214 caaaggatctattcatatctcttgtata 2050187  T

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Target: chr8; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 22 - 130
Target Start/End: Complemental strand, 2057277 - 2057169
Alignment:
Q  22 aaatcttgtggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctggtgagctatacaaatcaaaattgcttttgtaaa 121  Q
    ||||||| |||||| |||||||||||||||||| ||||| || || ||||||||||||||||||| || |||||||| | ||||| |||||| |||||||    
T  2057277 aaatcttctggttttggagtatcaggagccaagtaacaactaaaactatccctccaattgagtgccggagagctataaatatcaacattgctattgtaaa 2057178  T
Q  122 taaatgatc 130  Q
     ||| ||||    
T  2057177 caaaggatc 2057169  T

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Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 149
Target Start/End: Complemental strand, 2054274 - 2054193
Alignment:
Q  68 tatccctccaattgagtgctggtgagctatacaaatcaaaattgcttttgtaaataaatgatccatgcatatctcttgtata 149  Q
    ||||| |||||||||||||||| |||||||| | ||||| |||||| ||||||||||| ||||  |||||||||||||||||    
T  2054274 tatccttccaattgagtgctggagagctataaatatcaacattgctattgtaaataaaggatctctgcatatctcttgtata 2054193  T

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Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 2033073 - 2032985
Alignment:
Q  25 tcttgtggtttgggagtatcagg---agccaaggaacaagtacaagtatccctccaattgagtgctggtgagctatacaaatcaaaatt 110  Q
    |||||||||||| ||||||||||   ||||||| ||||  || || ||||||||||||||||||||||||||||||| | |||||||||    
T  2033073 tcttgtggtttgagagtatcaggtggagccaagtaacacataaaactatccctccaattgagtgctggtgagctataaatatcaaaatt 2032985  T

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Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 48908717 - 48908788
Alignment:
Q  22 aaatcttgtggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctggtgag 93  Q
    ||||||| ||||||||||||||||||||||||| ||||| || ||||||||||||||||||| |||||||||    
T  48908717 aaatcttctggtttgggagtatcaggagccaagaaacaaataaaagtatccctccaattgagcgctggtgag 48908788  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 119
Target Start/End: Original strand, 28786134 - 28786228
Alignment:
Q  25 tcttgtggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctggtgagctatacaaatcaaaattgcttttgta 119  Q
    ||||||||||| |||| || |||||||||||||||   | |||||||||||||||||||||||| ||| ||||| | || ||||||||| |||||    
T  28786134 tcttgtggtttaggagcattaggagccaaggaacacacaaaagtatccctccaattgagtgctgatgaactataaagattaaaattgctattgta 28786228  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 28713345 - 28713393
Alignment:
Q  65 aagtatccctccaattgagtgctggtgagctatacaaatcaaaattgct 113  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  28713345 aagtatccctccaattaagtgctggtgatctatacaaatcaaaattgct 28713393  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 28736619 - 28736664
Alignment:
Q  65 aagtatccctccaattgagtgctggtgagctatacaaatcaaaatt 110  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||    
T  28736619 aagtatccctccaattaagtgctggtgaactatacaaatcaaaatt 28736664  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 28743245 - 28743290
Alignment:
Q  65 aagtatccctccaattgagtgctggtgagctatacaaatcaaaatt 110  Q
    |||||||||||||||| || |||||||| |||||||||||||||||    
T  28743245 aagtatccctccaattaagcgctggtgaactatacaaatcaaaatt 28743290  T

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