View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13387_low_2 (Length: 426)
Name: NF13387_low_2
Description: NF13387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13387_low_2 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 16 - 426
Target Start/End: Complemental strand, 38128450 - 38128039
Alignment:
| Q |
16 |
aagattagctctgcagaaccagaaccaaaatagagcgtatagattagctatgcatgtaagctgagctcaaacttcgaacttttgagcaagtccaaatcaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38128450 |
aagattagctctgcagaaccagaaccaaaatagagcgtatagattagctatgcatgtaagctgagctcaaacttcgaacttttgagcaagtccaaatcaa |
38128351 |
T |
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| Q |
116 |
aacttaaatataaatacaaaaactggttatttggaaaacagatatgtgtaatggaaagtttcaaacttcttaacttaatcctatgattctaatattttta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38128350 |
aacttaaatataaatacaaaaactggttatttggaaaacagatatgtgtaatggaaagtttcaaacttcttaacttaatcctatgattctaatattttta |
38128251 |
T |
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| Q |
216 |
taag-nnnnnnnnnnnnngttcaagcttgagcttcatcattattagcaagtaaaacctaagtttcaagtgttttctcaattcaactcattcatactctta |
314 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38128250 |
taagaaaaaataaaaaaaattcaagcttgagcttcatcattattagcaagtaaaacctaagtttcaagtgttttctcaattcaactcattcatactctta |
38128151 |
T |
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| Q |
315 |
catgcatactactattttgaaaagattacaaagtaatcacaggtcaaagttcagtccattctattgaatatcttccatcattacttgatcaattacttat |
414 |
Q |
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| T |
38128150 |
catgcatactactattttgaaaagattacaaagtaatcacaagtcaaagttcagtccattctattgaatatcttccatcattacttgatcaattacttat |
38128051 |
T |
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| Q |
415 |
tcctctattacc |
426 |
Q |
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| T |
38128050 |
tcccctattacc |
38128039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 13090281 - 13090351
Alignment:
| Q |
144 |
atttggaaaacagatatgtgtaatggaaagtttcaaacttcttaacttaatcctatgattctaatattttt |
214 |
Q |
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| T |
13090281 |
atttggaaaacggatatgtggaatagaaagttttaaacttcttaacttaatcctatgattccaatcttttt |
13090351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 237 - 415
Target Start/End: Original strand, 45266991 - 45267165
Alignment:
| Q |
237 |
aagcttgagcttcatcattattagcaagtaaaacctaagtttcaagtgttttctcaattcaactcattcatactcttacatgcatactactattttgaaa |
336 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||||| | |||||| ||||| ||||| | ||||| | ||||||| ||||||| |
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| T |
45266991 |
aagcttgagcttcatcttttttagcaagtaaaacctaagtttcaagcgcgttctcagttcaattcattgactctctttcgtgcatac------tttgaaa |
45267084 |
T |
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| Q |
337 |
agattacaaagtaatcacaggtcaaagttcagtccattctattgaat--atcttccatcattacttgatcaattacttatt |
415 |
Q |
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| T |
45267085 |
ccatagcaaactaatcacaagtcaaagtttagtccactcaattcaattaaggttccatcattactttatcaattacttatt |
45267165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 17 - 116
Target Start/End: Original strand, 45266720 - 45266819
Alignment:
| Q |
17 |
agattagctctgcagaaccagaaccaaaatagagcgtatagattagctatgcatgtaagctgagctcaaacttcgaacttttgagcaagtccaaatcaaa |
116 |
Q |
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|||| |||| ||||||||||||||||||||| ||| ||||||||| ||||||| ||||| | ||||||||||| | |||||||||||| |||||||| |
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| T |
45266720 |
agatcagctatgcagaaccagaaccaaaataaagcatatagattaactatgcaggtaagttaagctcaaactttatatttttgagcaagttgaaatcaaa |
45266819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 18336928 - 18336855
Alignment:
| Q |
141 |
gttatttggaaaacagatatgtgtaatggaaagtttcaaacttcttaacttaatcctatgattctaatattttt |
214 |
Q |
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| T |
18336928 |
gttatttggaaaacagatatgtggaatagaaagttttaaacttcttaacttaatcctatgattccaatcttttt |
18336855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 26614446 - 26614519
Alignment:
| Q |
141 |
gttatttggaaaacagatatgtgtaatggaaagtttcaaacttcttaacttaatcctatgattctaatattttt |
214 |
Q |
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| T |
26614446 |
gttatttggaaaacggatatgtggaatagaaagttttaaacttcttaacttaatcctatgattccaatcttttt |
26614519 |
T |
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